-->
Receptor
PDB id Resolution Class Description Source Keywords
2QLX 2 Å EC: 5.1.3.- CRYSTAL STRUCTURE OF RHAMNOSE MUTAROTASE RHAU OF RHIZOBIUM LEGUMINOSARUM IN COMPLEX WITH L-RHAMNOSE RHIZOBIUM LEGUMINOSARUM BV. TRIFOLII RHAU MUTAROTASE RHIZOBIUM LEGUMINOSARUM. L-RHAMNOSE CARBOMETABOLISM ISOMERASE RHAMNOSE METABOLISM
Ref.: RHAU OF RHIZOBIUM LEGUMINOSARUM IS A RHAMNOSE MUTAR J.BACTERIOL. V. 190 2903 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMT A:301;
A:302;
A:303;
A:304;
A:305;
A:306;
A:307;
A:308;
B:301;
B:302;
B:303;
B:304;
B:305;
B:306;
B:307;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
46.025 C H2 O2 C(=O)...
MG A:200;
B:200;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
RM4 A:300;
B:300;
Valid;
Valid;
none;
none;
submit data
164.156 C6 H12 O5 C[C@H...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2QLX 2 Å EC: 5.1.3.- CRYSTAL STRUCTURE OF RHAMNOSE MUTAROTASE RHAU OF RHIZOBIUM LEGUMINOSARUM IN COMPLEX WITH L-RHAMNOSE RHIZOBIUM LEGUMINOSARUM BV. TRIFOLII RHAU MUTAROTASE RHIZOBIUM LEGUMINOSARUM. L-RHAMNOSE CARBOMETABOLISM ISOMERASE RHAMNOSE METABOLISM
Ref.: RHAU OF RHIZOBIUM LEGUMINOSARUM IS A RHAMNOSE MUTAR J.BACTERIOL. V. 190 2903 2008
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 2QLX - RM4 C6 H12 O5 C[C@H]1[C@....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 2QLX - RM4 C6 H12 O5 C[C@H]1[C@....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2QLX - RM4 C6 H12 O5 C[C@H]1[C@....
2 1X8D Kd = 6.16 mM RNS C6 H12 O5 C[C@@H]([C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RM4; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 FCB 1 1
2 FUC 1 1
3 FCA 1 1
4 XXR 1 1
5 G6D 1 1
6 RAM 1 1
7 RM4 1 1
8 FUL 1 1
9 FUF 0.424242 0.846154
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2QLX; Ligand: RM4; Similar sites found with APoc: 43
This union binding pocket(no: 1) in the query (biounit: 2qlx.bio2) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 2VPR TDC None
2 3SFI 3SF None
3 5V13 JH3 None
4 5DEP UD1 None
5 2JAP J01 None
6 1XCL SAH None
7 3LPF Z77 1.85185
8 1QFT HSM 1.85185
9 3OKI OKI 2.77778
10 1O7Q GAL NAG 2.77778
11 1O7Q UDP 2.77778
12 5FM0 WAQ 3.7037
13 2O7B HC4 3.7037
14 3UIM ANP 3.7037
15 2B5W NAP 4.62963
16 4JYD SAH 5.55556
17 2CER PGI 5.55556
18 5YU3 PRO 5.55556
19 5YU3 NAD 5.55556
20 5WL1 CUY 6.48148
21 3B99 U51 6.48148
22 4A2A ATP 7.40741
23 1SR7 MOF 8.33333
24 1LSH PLD 8.33333
25 4UBT COA 8.33333
26 3G08 FEE 9.09091
27 5N1Q TP7 11.1111
28 4M8E 29V 12.037
29 5NI5 8YB 12.037
30 3H0A D30 12.037
31 2BR6 HSL 12.963
32 3UG4 AHR 12.963
33 2JFZ DGL 13.8889
34 2JFZ 003 13.8889
35 1WUR 8DG 16.6667
36 2OGA PGU 16.6667
37 1PS6 4TP 17.5926
38 5A8R TP7 20.3704
39 5JZI LYS LEU VAL ALA LEU GLY ILE ASN ALA VAL 22.2222
40 5ZCO PGV 23.7288
41 2DYR PGV 23.7288
42 5Z84 PGV 23.7288
43 2DYS PGV 23.7288
Pocket No.: 2; Query (leader) PDB : 2QLX; Ligand: RM4; Similar sites found with APoc: 33
This union binding pocket(no: 2) in the query (biounit: 2qlx.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 5CXI 5TW None
2 1HG4 LPP None
3 3N3T C2E None
4 2PYW SR1 None
5 4OHU NAD None
6 4OHU 2TK None
7 4MLO PAM None
8 2PYW ADP None
9 2QM9 TDZ None
10 2FZW NAD 1.85185
11 3E2M E2M 1.85185
12 5HWO HMG 3.7037
13 1D1T NAD 3.7037
14 3UXL CFI 4.62963
15 1R5L VIV 4.62963
16 4CCO OGA 4.62963
17 5FBN 5WF 4.62963
18 1BB6 UMG 5.55556
19 3ZQ9 NOY BGC 5.55556
20 3T6E UQ9 5.55556
21 1UA7 ACI GLD GLC ACI G6D BGC 6.48148
22 4P6W MOF 6.48148
23 3P9T TCL 6.48148
24 3QP8 HL0 6.48148
25 1RX0 2MC 8.33333
26 2QA8 GEN 9.25926
27 4MGB XDH 9.25926
28 6AD9 KK4 11.1111
29 4ZZW CBI 12.037
30 5X8Q 82R 12.037
31 4M52 M52 16.6667
32 3F10 8HG 17.5926
33 1XI9 PLP 22.2222
Pocket No.: 3; Query (leader) PDB : 2QLX; Ligand: RM4; Similar sites found with APoc: 2
This union binding pocket(no: 3) in the query (biounit: 2qlx.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 2BIW 3ON 2.77778
2 3SCM LGN 10.1852
Pocket No.: 4; Query (leader) PDB : 2QLX; Ligand: RM4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2qlx.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2QLX; Ligand: RM4; Similar sites found with APoc: 2
This union binding pocket(no: 5) in the query (biounit: 2qlx.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1SO2 666 4.62963
2 5IH9 6BF 5.55556
Pocket No.: 6; Query (leader) PDB : 2QLX; Ligand: RM4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2qlx.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback