Receptor
PDB id Resolution Class Description Source Keywords
7BP4 2.1 Å NON-ENZYME: OTHER STRUCTURAL INSIGHTS INTO NUCLEOSOME REORGANIZATION BY NAP1-R PROTEIN 1 (NRP1) ARABIDOPSIS THALIANA COMPLEX HISTONE PLANT PROTEIN NUCLEAR PROTEIN
Ref.: NAP1-RELATED PROTEIN 1 (NRP1) HAS MULTIPLE INTERACT FOR CHAPERONING HISTONES H2A-H2B. PROC.NATL.ACAD.SCI.USA V. 117 30391 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL B:201;
 Invalid;
 none;
 submit data
92.094 C3 H8 O3 C(C(C...
ASP ASP ASP ASP TYR L:228;
C:228;
 Valid;
Valid;
 none;
none;
 submit data
637.511 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
7BP6 1.58 Å NON-ENZYME: OTHER STRUCTURAL INSIGHTS INTO NUCLEOSOME REORGANIZATION BY NAP1-R PROTEIN 1 (NRP1) ARABIDOPSIS THALIANA COMPLEX HISTONE PLANT PROTEIN NUCLEAR PROTEIN-CHAPERONE C
Ref.: NAP1-RELATED PROTEIN 1 (NRP1) HAS MULTIPLE INTERACT FOR CHAPERONING HISTONES H2A-H2B. PROC.NATL.ACAD.SCI.USA V. 117 30391 2020
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 7BP4 - ASP ASP ASP ASP TYR n/a n/a
2 7BP5 - ASN ASP PRO ASP TYR n/a n/a
3 7BP6 - ASP ALA ASP GLU GLU ASP PHE n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 7BP4 - ASP ASP ASP ASP TYR n/a n/a
2 7BP5 - ASN ASP PRO ASP TYR n/a n/a
3 7BP6 - ASP ALA ASP GLU GLU ASP PHE n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 7BP4 - ASP ASP ASP ASP TYR n/a n/a
2 7BP5 - ASN ASP PRO ASP TYR n/a n/a
3 7BP6 - ASP ALA ASP GLU GLU ASP PHE n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ASP ASP ASP ASP TYR; Similar ligands found: 33
No: Ligand ECFP6 Tc MDL keys Tc
1 ASP ASP ASP ASP TYR 1 1
2 ASP ARG VAL TYR 0.618421 0.826087
3 SER GLN ASN TYR 0.571429 0.829787
4 ASP PHE GLU ASP TYR GLU PHE ASP 0.55814 0.829787
5 ASP ALA ASP GLU TYR LEU 0.545455 0.866667
6 VAL TYR 0.507463 0.809524
7 TYR GLN PHE 0.493671 0.860465
8 GLU GLU GLN GLU GLU TYR 0.493333 0.880952
9 GLY TYR 0.476923 0.813953
10 TYR LEU ASP SER GLY ILE HIS SER GLY ALA 0.47619 0.808511
11 MET ASN TYR ASP ILE 0.474359 0.883721
12 TYR ASP GLN ILE LEU 0.472527 0.826087
13 LYS TYR LYS 0.455696 0.765957
14 CYS THR GLU LEU LYS LEU ASN ASP TYR 0.449541 0.722222
15 GLU GLU ASN ASP PRO ASP TYR 0.447917 0.672414
16 CYS THR GLU LEU LYS LEU SER ASP TYR 0.445455 0.722222
17 TYR VAL ASP GLY ALA 0.443182 0.791667
18 TYR SER ALA 0.44 0.822222
19 ASP SER TRP LYS ASP GLY CYS TYR 0.438017 0.661017
20 ASP ALA ASP GLU GLU ASP PHE 0.436782 0.795455
21 GLU LEU ASP LYS TYR ALA SER 0.432692 0.75
22 THR ASN GLU PHE TYR PHE 0.431818 0.844444
23 ASP GLU LEU GLU ILE LYS ALA TYR 0.431193 0.730769
24 GLU ASN LEU TYR PHE GLN 0.42 0.76
25 GLU PRO VAL GLU THR THR ASP TYR 0.419643 0.639344
26 THR PRO ASP TYR PHE LEU 0.416667 0.666667
27 GLY GLU GLU GLU GLY GLU CYS TYR 0.413043 0.770833
28 SER GLN TYR TYR TYR ASN SER LEU 0.412371 0.735849
29 ALA THR ALA ALA ALA THR GLU ALA TYR 0.404255 0.866667
30 GLU THR PHE TYR VAL ASP GLY 0.403846 0.75
31 ASP LEU TYR CYS TYR GLU GLN LEU ASN 0.401869 0.735849
32 ASP SEP TYR GLU VAL LEU ASP LEU 0.401709 0.696429
33 TYR PRO TYR 0.4 0.603448
Similar Ligands (3D)
Ligand no: 1; Ligand: ASP ASP ASP ASP TYR; Similar ligands found: 1
No: Ligand Similarity coefficient
1 ASN ASP PRO ASP TYR 0.9653
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 7BP6; Ligand: ASP ALA ASP GLU GLU ASP PHE; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 7bp6.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
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