-->
Receptor
PDB id Resolution Class Description Source Keywords
3C0O 2.5 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF THE PROAEROLYSIN MUTANT Y221G COMPLEXED MANNOSE-6-PHOSPHATE AEROMONAS HYDROPHILA TOXIN CYTOLYTIC TOXIN PORE-FORMING TOXIN
Ref.: MOLECULAR ASSEMBLY OF THE AEROLYSIN PORE REVEALS A MEMBRANE-INSERTION MECHANISM. NAT.CHEM.BIOL. V. 9 623 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT A:600;
Invalid;
none;
submit data
59.044 C2 H3 O2 CC(=O...
M6P A:501;
B:502;
Valid;
Valid;
none;
none;
submit data
260.136 C6 H13 O9 P C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3C0O 2.5 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF THE PROAEROLYSIN MUTANT Y221G COMPLEXED MANNOSE-6-PHOSPHATE AEROMONAS HYDROPHILA TOXIN CYTOLYTIC TOXIN PORE-FORMING TOXIN
Ref.: MOLECULAR ASSEMBLY OF THE AEROLYSIN PORE REVEALS A MEMBRANE-INSERTION MECHANISM. NAT.CHEM.BIOL. V. 9 623 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 3C0O - M6P C6 H13 O9 P C([C@@H]1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 3C0O - M6P C6 H13 O9 P C([C@@H]1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 3C0O - M6P C6 H13 O9 P C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: M6P; Similar ligands found: 61
No: Ligand ECFP6 Tc MDL keys Tc
1 M6D 1 1
2 BG6 1 1
3 G6P 1 1
4 A6P 1 1
5 BGP 1 1
6 M6P 1 1
7 RP5 0.8 0.902439
8 ABF 0.8 0.902439
9 HSX 0.8 0.902439
10 AHG 0.621622 0.795455
11 GLP 0.590909 0.829787
12 4R1 0.590909 0.829787
13 50A 0.571429 0.8
14 RF5 0.571429 0.8
15 16G 0.55102 0.75
16 4QY 0.55102 0.75
17 BMX 0.55102 0.75
18 EMZ 0.55 0.636364
19 GRF 0.547619 0.692308
20 NNG 0.530612 0.75
21 XYT 0.527273 0.906977
22 1FT 0.517857 0.847826
23 FDQ 0.511111 0.777778
24 G16 0.5 0.951219
25 PRP 0.5 0.880952
26 RI2 0.5 0.857143
27 T6P 0.470588 0.906977
28 D6G 0.468085 0.951219
29 P3M 0.466667 0.906977
30 GIV 0.461538 0.675
31 GLC 0.461538 0.675
32 ALL 0.461538 0.675
33 GXL 0.461538 0.675
34 GAL 0.461538 0.675
35 BMA 0.461538 0.675
36 BGC 0.461538 0.675
37 WOO 0.461538 0.675
38 GLA 0.461538 0.675
39 MAN 0.461538 0.675
40 LAK 0.45098 0.674419
41 GLA BGC 0.45098 0.674419
42 MAN MAN 0.45098 0.674419
43 GLC GLC 0.45098 0.674419
44 BGC GLC 0.45098 0.674419
45 MAN BMA 0.45098 0.674419
46 GAL GLC 0.45098 0.674419
47 BMA MAN 0.45098 0.674419
48 BMA GLA 0.45098 0.674419
49 GLA GLC 0.45098 0.674419
50 GLC BGC 0.45098 0.674419
51 GLA BMA 0.45098 0.674419
52 MLB 0.45098 0.674419
53 BGC GLA 0.45098 0.674419
54 GAL GAL 0.45098 0.674419
55 N 0.444444 0.777778
56 PPC 0.442308 0.822222
57 GLC GLC GLC GLC GLC BGC 0.433962 0.674419
58 GLC GLC GLC 0.433962 0.674419
59 MAN MAN MAN 0.433962 0.674419
60 BMA MAN MAN 0.433962 0.674419
61 GLC GLC GLC GLC BGC 0.433962 0.674419
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3C0O; Ligand: M6P; Similar sites found with APoc: 9
This union binding pocket(no: 1) in the query (biounit: 3c0o.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 1DL5 SAH 2.83912
2 4ZS4 ATP 3.25733
3 4L9Z OXL 3.83481
4 1RDT 570 4.57746
5 1FM9 570 4.77941
6 2CFC KPC 4.8
7 5LX9 OLA 5.53746
8 3WDM ADN 6.51341
9 1E19 ADP 6.6879
Pocket No.: 2; Query (leader) PDB : 3C0O; Ligand: M6P; Similar sites found with APoc: 4
This union binding pocket(no: 2) in the query (biounit: 3c0o.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
1 5C1P ADP 3.59477
2 2H29 DND 3.7037
3 5V22 SAH 5.38721
4 1Q7B NAP 5.7377
APoc FAQ
Feedback