Receptor
PDB id Resolution Class Description Source Keywords
2X6M 1.62 Å NON-ENZYME: OTHER STRUCTURE OF A SINGLE DOMAIN CAMELID ANTIBODY FRAGMENT IN CO A C-TERMINAL PEPTIDE OF ALPHA-SYNUCLEIN CAMELUS DROMEDARIUS IMMUNE SYSTEM PARKINSON-prime S DISEASE ALZHEIMER DISEASE AMYLOINANOBODY AFFINITY TAG
Ref.: STRUCTURE AND PROPERTIES OF A COMPLEX OF ALPHA-SYNU A SINGLE-DOMAIN CAMELID ANTIBODY. J.MOL.BIOL. V. 402 326 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLY TYR GLN ASP TYR GLU PRO GLU ALA B:135;
Valid;
none;
submit data
719.681 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2X6M 1.62 Å NON-ENZYME: OTHER STRUCTURE OF A SINGLE DOMAIN CAMELID ANTIBODY FRAGMENT IN CO A C-TERMINAL PEPTIDE OF ALPHA-SYNUCLEIN CAMELUS DROMEDARIUS IMMUNE SYSTEM PARKINSON-prime S DISEASE ALZHEIMER DISEASE AMYLOINANOBODY AFFINITY TAG
Ref.: STRUCTURE AND PROPERTIES OF A COMPLEX OF ALPHA-SYNU A SINGLE-DOMAIN CAMELID ANTIBODY. J.MOL.BIOL. V. 402 326 2010
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 2X6M - GLY TYR GLN ASP TYR GLU PRO GLU ALA n/a n/a
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 65 families.
1 1QD0 - RR6 C35 H25 N9 O22 S6 c1cc(c(cc1....
2 1I3U - RR1 C19 H16 N8 O10 S3 c1ccc(c(c1....
3 3QXT Kd = 6700 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
4 3QXV Kd = 5 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
5 2X6M - GLY TYR GLN ASP TYR GLU PRO GLU ALA n/a n/a
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 43 families.
1 1QD0 - RR6 C35 H25 N9 O22 S6 c1cc(c(cc1....
2 1I3U - RR1 C19 H16 N8 O10 S3 c1ccc(c(c1....
3 3LN9 - FLC C6 H5 O7 C(C(=O)[O-....
4 3QXT Kd = 6700 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
5 3QXV Kd = 5 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
6 2X6M - GLY TYR GLN ASP TYR GLU PRO GLU ALA n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLY TYR GLN ASP TYR GLU PRO GLU ALA; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GLY TYR GLN ASP TYR GLU PRO GLU ALA 1 1
2 ASP TYR GLU PRO ILE PRO GLU GLU ALA PHE 0.708661 0.887097
3 TYR LEU GLU PRO ALA PRO VAL THR ALA 0.578125 0.873016
4 ALA PRO GLN PRO ALA PRO GLU ASN ALA TYR 0.560606 0.887097
5 PHE TYR ALA PRO GLU PRO ILE THR SER LEU 0.549296 0.808824
6 PHE GLU ALA ILE PRO ALA GLU TYR LEU 0.547445 0.885246
7 TYR LEU GLU PRO GLY PRO VAL THR ALA 0.536765 0.873016
8 ASP PHE GLU GLU ILE PRO GLY GLU TYR LEU 0.534722 0.873016
9 TYR PRO SER LYS PRO ASP ASN PRO GLY GLU 0.528455 0.885246
10 ASN ASP LYS TYR GLU PRO PHE TRP GLU 0.525974 0.857143
11 ASP PHE GLU GLU ILE PRO GLU GLU TYS 0.52518 0.72
12 ASN GLY TYR GLU ASN PRO THR TYR LYS 0.524823 0.859375
13 GLY TYR GLU ASN PRO THR TYR LYS PHE PHE 0.524476 0.873016
14 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.52381 0.859375
15 GLU TYR LEU GLY LEU ASP VAL PRO VAL 0.518248 0.932203
16 GLN MET PRO THR GLU ASP GLU TYR 0.514493 0.833333
17 TYR PRO TYR 0.514286 0.894737
18 VAL TYR PRO IAS HIS ALA 0.511111 0.870968
19 SER SER PHE TYR PRO SEP ALA GLU GLY 0.507353 0.820895
20 TYR LEU LYS GLU PRO VAL HIS GLY VAL 0.506757 0.84375
21 PHE ALA PRO GLY PHE PHE PRO TYR LEU 0.50365 0.84375
22 GLU GLY GLN PTR GLN PRO GLN PRO ALA 0.503597 0.80303
23 ASP VAL GLN THR GLY ARG ARG PRO TYR GLU 0.503401 0.797101
24 SER ILE TYR PHE TPO PRO GLU LEU TYR ASP 0.5 0.753425
25 GLN ASN TYR PRO ILE VAL GLN 0.5 0.887097
26 TYR GLN PHE GLY PRO ASP PHE PRO ILE ALA 0.5 0.859375
27 GLN VAL PRO SER ASP PRO TYR ASN TYR 0.5 0.846154
28 GLU GLU PRO THR VAL ILE LYS LYS TYR 0.5 0.887097
29 TYR LEU GLU PRO GLY PRO VAL THR VAL 0.496403 0.873016
30 MET TYR TRP TYR PRO TYR 0.496296 0.815385
31 LYS GLN GLU PRO GLN GLU ILE ASP PHE 0.492958 0.833333
32 TYR PRO PHE PHE NH2 0.491379 0.894737
33 TYR MET PHE PRO ASN ALA PRO TYR LEU 0.489655 0.785714
34 ASP ALA ASP GLU TYR LEU 0.487179 0.677966
35 ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU 0.486842 0.701299
36 TRP GLU TYR ILE PRO ASN VAL 0.486486 0.820895
37 LEU LEU PHE GLY LYS PRO VAL TYR VAL 0.486301 0.870968
38 GLU SER ASP PRO ILE VAL ALA GLN TYR 0.482759 0.846154
39 ASP ARG VAL TYR ILE HIS PRO PHE 0.481013 0.763889
40 GLY SER ASP PRO PHE LYS 0.48 0.819672
41 TYR TYR SER ILE ILE PRO HIS SER ILE 0.478873 0.782609
42 LYS TYR TYR SER ILE ILE PRO HIS SER ILE 0.478873 0.782609
43 ASP PHE GLU ASP TYR GLU PHE ASP 0.478632 0.689655
44 GLY PHE GLU PRO 0.477876 0.872727
45 LEU PHE GLY TYR PRO VAL TYR VAL 0.47482 0.885246
46 TRP ASP ILE PRO PHE 0.474576 0.844828
47 TRP MET ASP PHE ASP ASP ASP ILE PRO PHE 0.474576 0.844828
48 TYR PRO LYS ARG ILE ALA 0.474453 0.791045
49 PHE GLN PRO GLN ASN GLY GLN PHE ILE 0.471429 0.769231
50 ALA ILE ALA TYR PHE ILE PRO ASP GLN ALA 0.471429 0.916667
51 ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 0.471338 0.763889
52 GLU ALA ASP PRO THR GLY HIS SER TYR 0.467532 0.833333
53 ASP PHE GLU GLU ILE PRO GLY GLU TYS LEU 0.463576 0.701299
54 LYS LEU PRO ALA GLN PHE TYR ILE LEU 0.463087 0.857143
55 LEU LEU PHE GLY PHE PRO VAL TYR VAL 0.462069 0.885246
56 LEU LEU PHE GLY TYR PRO VAL TYR VAL 0.462069 0.885246
57 THR ASN GLU TYR TYR VAL 0.460177 0.655738
58 LYS LEU TYR GLN ASN PRO THR THR TYR ILE 0.46 0.80597
59 SER SER TYR ARG ARG PRO VAL GLY ILE 0.459459 0.75
60 LYS THR PHE PRO PRO THR GLU PRO LYS 0.458333 0.883333
61 ASN ARG PRO VAL TYR ILE PRO ARG PRO PRO 0.457746 0.753623
62 ACE ILE GLU PRO ASJ 0.457627 0.816667
63 ARG LEU TYR HIS SEP LEU PRO ALA 0.457516 0.670886
64 TYR SEP PRO THR SEP PRO SER 0.457364 0.794118
65 TYR TYR SER ILE ALA PRO HIS SER ILE 0.455782 0.757143
66 ARG ILE PRO SER TYR ARG TYR ARG TYR 0.454545 0.726027
67 ASN TRP SER HIS PRO GLN PHE GLU LYS 0.453901 0.803279
68 VAL PRO LEU ARG PRO MET THR TYR 0.452703 0.72973
69 GLU PHE SER PRO 0.452174 0.862069
70 GLU VAL ALA PRO PRO GLU TYR HIS ARG LYS 0.451807 0.760563
71 ARG MET PHE PRO ASN ALA PRO TYR LEU 0.451613 0.714286
72 ARG LEU TYR GLN ASN PRO THR THR TYR ILE 0.451613 0.72973
73 LYS PRO ILE VAL GLN TYR ASP ASN PHE 0.45098 0.833333
74 GLN VAL PRO LEU ARG PRO MET THR TYR LYS 0.450617 0.743243
75 PHE ALA PRO GLY ASN TYR PRO ALA LEU 0.44898 0.820895
76 PHE LEU PRO SER ASP PHE PHE PRO SER VAL 0.448529 0.787879
77 ASN ASP TRP LEU LEU PRO SER TYR 0.448052 0.785714
78 GLN ASN GLY PTR GLU ASN PRO THR TYR 0.447552 0.820895
79 HIS SER ILE THR TYR LEU LEU PRO VAL 0.447368 0.782609
80 THR ASN GLU PHE TYR ALA 0.447154 0.634921
81 ASP LEU TYR CYS TYR GLU GLN LEU ASN 0.446154 0.636364
82 ARG VAL SER PRO SER THR SER TYR THR PRO 0.446154 0.854839
83 LEU PRO GLU THR GLY 0.445378 0.819672
84 VAL TYR ILE HIS PRO PHE 0.445205 0.8
85 ASP PHE GLU GLU ILE PRO GLY GLU PTR 0.445161 0.771429
86 GLY ARG PRO ARG THR THR SER PHE ALA GLU 0.443709 0.753623
87 PHE SER ALA PTR PRO SER GLU GLU ASP 0.442953 0.797101
88 GLN LEU SER PRO PHE PRO PHE ASP LEU 0.440559 0.8
89 ALA PRO ALA TRP LEU PHE GLU ALA 0.44 0.78125
90 THR ASN GLU PHE TYR PHE 0.439655 0.661017
91 ACE GLN PM3 GLU GLU ILE PRO 0.439394 0.731343
92 ACE TYR PRO ILE GLN GLU THR 0.438849 0.885246
93 SER ALA GLU PRO VAL PRO LEU GLN LEU 0.437037 0.769231
94 GLU PRO GLN ALA PRO TRP MET GLU GLN 0.436242 0.735294
95 PHE ASN PHE PRO GLN ILE THR 0.434783 0.8
96 TYR LEU ALA PRO GLY PRO VAL THR ALA 0.432624 0.859375
97 DVA DPR GLY DSN DGN DHI DTY DAS DSN 0.431373 0.808824
98 ILE GLY PRO GLY ARG ALA PHE TYR ALA 0.431373 0.794118
99 MET VAL TRP GLY PRO ASP PRO LEU TYR VAL 0.431138 0.797101
100 VAL SER GLN ASN TYR PRO ILE VAL GLN ASN 0.430556 0.818182
101 PRO PRO ARG PRO ILE TYR ASN ARG ASN 0.42953 0.771429
102 GLU LYS PRO SER SER SER 0.428571 0.786885
103 SER ASN TRP SER HIS PRO GLN PHE GLU LYS 0.428571 0.761194
104 SER SER ARG LYS GLU TYR TYR ALA 0.427419 0.641791
105 THR PRO TYR ASP ILE ASN GLN MET LEU 0.425806 0.808824
106 PHE ASN ARG PRO VAL 0.424242 0.746269
107 ACE PRO ALA PRO TYR 0.424 0.866667
108 SER ASP TYR GLN ARG LEU 0.424 0.651515
109 LYS PRO PHE PTR VAL ASN VAL GLU PHE 0.423077 0.760563
110 THR ASN GLU TYR LYS VAL 0.422764 0.745763
111 ASP PHE GLU GLU ILE 0.422414 0.62069
112 GLU VAL PTR GLU SER PRO 0.422222 0.808824
113 SER MET PRO GLU LEU SER PRO VAL LEU 0.421429 0.735294
114 ALA ARG SER HIS SEP TYR PRO ALA 0.420382 0.679487
115 PRO GLU PRO THR ALA PRO PRO GLU GLU 0.42029 0.836066
116 PRO GLN PTR GLU PTR ILE PRO ALA 0.42 0.757143
117 ACE LEU TYR ALA SER SER ASN PRO ALA PTR 0.42 0.733333
118 PRO PRO THR LEU HIS GLU LEU TYR ASP LEU 0.419753 0.833333
119 ARG PRO MET THR TYR LYS GLY ALA LEU 0.419753 0.743243
120 ARG PRO ARG PRO ASP ASP LEU GLU ILE 0.41958 0.710145
121 SER ASP ILE LEU PHE PRO ALA ASP SER 0.41844 0.796875
122 ALA ASN SER ARG TYR PRO THR SER ILE ILE 0.418301 0.774648
123 ASP GLY PTR MET PRO 0.41791 0.782609
124 GLN ASN GLY PTR VAL ASN PRO THR TYR 0.417808 0.774648
125 SER PRO THR SER PRO SEP TYR SER PRO PRO 0.417808 0.779412
126 ALA ILE MET PRO ALA ARG PHE TYR PRO LYS 0.415663 0.716216
127 ILE LEU LYS GLU PRO VAL HIS GLY VAL 0.415584 0.765625
128 N7P THR SEP PRO SER TYR SET 0.415493 0.736111
129 DHI PRO PHE HIS LEU LEU VAL TYR 0.415094 0.828125
130 GLU PRO GLN ALA PRO TRP MET GLU 0.414474 0.735294
131 SER GLU CYS THR THR PRO CYS 0.414062 0.806452
132 LYS PRO HIS SER ASP 0.413534 0.78125
133 LEU PRO PRO LEU ASP ILE THR PRO TYR 0.413333 0.887097
134 LYS PRO ILE VAL VAL LEU HIS GLY TYR 0.411392 0.830769
135 LEU PRO PHE GLU ARG ALA THR ILE MET 0.411043 0.702703
136 GLY SER ASP PRO TRP LYS 0.410072 0.796875
137 SER TYR SEP PRO THR SEP PRO SEP TYR SER 0.410072 0.791045
138 LEU PRO PHE GLU ARG ALA THR VAL MET 0.409938 0.712329
139 ARG SER ALA SEP GLU PRO SER LEU 0.409396 0.636364
140 PHE SER HIS PRO GLN ASN THR 0.408163 0.80303
141 VAL PRO TYR SER SER ALA GLN NAG 0.406897 0.797101
142 LEU PRO PHE GLU LYS SER THR VAL MET 0.406452 0.764706
143 GLU ASN GLN LYS GLU TYR PHE PHE 0.40625 0.716667
144 GLU GLU GLN GLU GLU TYR 0.40566 0.709091
145 TYR PRO ASN VAL ASN ILE HIS ASN PHE 0.405063 0.808824
146 PHE ALA PRO GLY ASN TYR PRO ALA TRP 0.404908 0.820895
147 TYR LEU GLY GLY PRO ASP PHE PRO THR ILE 0.403727 0.833333
148 ASP SEP TYR GLU VAL LEU ASP LEU 0.402778 0.617647
149 ARG TYR PRO LEU THR PHE GLY TRP 0.402367 0.753425
150 PRO PRO ALA TYR PRO PRO PRO PRO VAL PRO 0.40146 0.883333
151 ASN TYR THR PRO GLY PRO GLY THR ARG PHE 0.401235 0.774648
152 SER ALA PRO ASP THR ARG PRO ALA 0.4 0.728571
153 SER GLU ASP GLU PHE TYR ASP ALA LEU SER 0.4 0.65625
Similar Binding Sites (Proteins are less than 50% similar to leader)
Feedback