Receptor
PDB id Resolution Class Description Source Keywords
6KTC 2.01 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF YBX1 CSD WITH M5C RNA HOMO SAPIENS M5C CSD RNA BINDING PROTEIN-RNA COMPLEX
Ref.: DROSOPHILAYBX1 HOMOLOG YPS PROMOTES OVARIAN GERM LI CELL DEVELOPMENT BY PREFERENTIALLY RECOGNIZING 5-METHYLCYTOSINE RNAS. PROC.NATL.ACAD.SCI.USA V. 117 3603 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
G 5MC C U V:9;
 Valid;
 Atoms found LESS than expected: % Diff = 0.012;
 submit data
1274.76 n/a P(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6KUG 1.4 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF YBX1 CSD WITH RNA HOMO SAPIENS CSD RNA BINDING PROTEIN RNA BINDING PROTEIN-RNA COMPLEX
Ref.: DROSOPHILAYBX1 HOMOLOG YPS PROMOTES OVARIAN GERM LI CELL DEVELOPMENT BY PREFERENTIALLY RECOGNIZING 5-METHYLCYTOSINE RNAS. PROC.NATL.ACAD.SCI.USA V. 117 3603 2020
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 6KTC - G 5MC C U n/a n/a
2 6KUG - G C C U n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 6KTC - G 5MC C U n/a n/a
2 6KUG - G C C U n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 6KTC - G 5MC C U n/a n/a
2 6KUG - G C C U n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: G 5MC C U ; Similar ligands found: 18
No: Ligand ECFP6 Tc MDL keys Tc
1 G 5MC C U 1 1
2 G C 0.664336 0.939024
3 OMC OMU OMG OMG U 0.625 0.928571
4 G 6MZ C U 0.598765 0.903614
5 6MZ C U 0.58642 0.892857
6 GPC 0.515723 0.895349
7 CSV 0.483221 0.8
8 CSQ 0.483221 0.8
9 CG2 0.47205 0.927711
10 U2G 0.459627 0.927711
11 G G 6MZ C 0.453988 0.892857
12 UCG 0.450292 0.926829
13 APC G U 0.432749 0.857143
14 G3D 0.426667 0.878049
15 UDP ALA FGA CYS DAL DAL MUB C C A9Z 0.423387 0.793814
16 CTP C C C C 0.41358 0.82716
17 G4P 0.411765 0.878049
18 0O2 0.401274 0.878049
Similar Ligands (3D)
Ligand no: 1; Ligand: G 5MC C U ; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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