Receptor
PDB id Resolution Class Description Source Keywords
6KUG 1.4 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF YBX1 CSD WITH RNA HOMO SAPIENS CSD RNA BINDING PROTEIN RNA BINDING PROTEIN-RNA COMPLEX
Ref.: DROSOPHILAYBX1 HOMOLOG YPS PROMOTES OVARIAN GERM LI CELL DEVELOPMENT BY PREFERENTIALLY RECOGNIZING 5-METHYLCYTOSINE RNAS. PROC.NATL.ACAD.SCI.USA V. 117 3603 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
G C C U B:1;
 Valid;
 Atoms found LESS than expected: % Diff = 0.012;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6KUG 1.4 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF YBX1 CSD WITH RNA HOMO SAPIENS CSD RNA BINDING PROTEIN RNA BINDING PROTEIN-RNA COMPLEX
Ref.: DROSOPHILAYBX1 HOMOLOG YPS PROMOTES OVARIAN GERM LI CELL DEVELOPMENT BY PREFERENTIALLY RECOGNIZING 5-METHYLCYTOSINE RNAS. PROC.NATL.ACAD.SCI.USA V. 117 3603 2020
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 6KTC - G 5MC C U n/a n/a
2 6KUG - G C C U n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 6KTC - G 5MC C U n/a n/a
2 6KUG - G C C U n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 6KTC - G 5MC C U n/a n/a
2 6KUG - G C C U n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: G C C U ; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: G C C U ; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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