Receptor
PDB id Resolution Class Description Source Keywords
6Z1N 2.3 Å EC: 2.5.1.87 STRUCTURE OF THE HUMAN HETEROTETRAMERIC CIS-PRENYLTRANSFERAS HOMO SAPIENS DOLICHOL CIS-PRENYLTRANSFERASE NGBR DHDDS NOGO-B RECEPTOTRANSFERASE
Ref.: STRUCTURAL BASIS OF HETEROTETRAMERIC ASSEMBLY AND D MUTATIONS IN THE HUMAN CIS-PRENYLTRANSFERASE COMPLE NAT COMMUN V. 11 5273 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG A:403;
 Part of Protein;
 none;
 submit data
24.305 Mg [Mg+2...
FPP A:401;
 Valid;
 none;
 submit data
382.326 C15 H28 O7 P2 CC(=C...
PO4 A:402;
 Invalid;
 none;
 submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6Z1N 2.3 Å EC: 2.5.1.87 STRUCTURE OF THE HUMAN HETEROTETRAMERIC CIS-PRENYLTRANSFERAS HOMO SAPIENS DOLICHOL CIS-PRENYLTRANSFERASE NGBR DHDDS NOGO-B RECEPTOTRANSFERASE
Ref.: STRUCTURAL BASIS OF HETEROTETRAMERIC ASSEMBLY AND D MUTATIONS IN THE HUMAN CIS-PRENYLTRANSFERASE COMPLE NAT COMMUN V. 11 5273 2020
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 6W2L - IPE C5 H12 O7 P2 CC(=C)CCO[....
2 6Z1N - FPP C15 H28 O7 P2 CC(=CCC/C(....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 6W2L - IPE C5 H12 O7 P2 CC(=C)CCO[....
2 6Z1N - FPP C15 H28 O7 P2 CC(=CCC/C(....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 6W2L - IPE C5 H12 O7 P2 CC(=C)CCO[....
2 6Z1N - FPP C15 H28 O7 P2 CC(=CCC/C(....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: FPP; Similar ligands found: 39
No: Ligand ECFP6 Tc MDL keys Tc
1 VTP 1 0.975
2 GRG 1 1
3 OTP 1 0.975
4 FPP 1 1
5 ZTP 1 0.975
6 GPP 0.911111 0.974359
7 DSL 0.744681 0.9
8 0K3 0.744681 0.9
9 FJP 0.744681 0.923077
10 FDF 0.727273 0.904762
11 FFF 0.714286 0.928571
12 HZZ 0.680851 0.897436
13 FGG 0.590164 0.928571
14 FPF 0.57377 0.928571
15 2CF 0.57377 0.928571
16 ELU 0.571429 0.951219
17 ELR 0.571429 0.951219
18 10E 0.568627 0.702128
19 10D 0.568627 0.785714
20 MGM 0.5625 0.764706
21 DMA 0.5625 0.846154
22 A4S 0.558824 0.698113
23 3E9 0.555556 0.951219
24 FPS 0.551724 0.880952
25 GGS 0.551724 0.880952
26 H6P 0.54902 0.785714
27 FPQ 0.539683 0.826087
28 10G 0.538462 0.767442
29 FII 0.507937 0.666667
30 GST 0.482759 0.857143
31 PS7 0.48 0.906977
32 C0X 0.477612 0.744681
33 FHP 0.473684 0.761905
34 1NH 0.457831 0.770833
35 0FV 0.442623 0.904762
36 LA6 0.442623 0.904762
37 SZH 0.428571 0.655172
38 749 0.428571 0.897436
39 9GB 0.415094 0.825
Similar Ligands (3D)
Ligand no: 1; Ligand: FPP; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6Z1N; Ligand: FPP; Similar sites found with APoc: 3
This union binding pocket(no: 1) in the query (biounit: 6z1n.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 6LM1 OCT 12.7413
2 6LM1 D10 12.7413
3 4ONC 40B 45.0704
Pocket No.: 2; Query (leader) PDB : 6Z1N; Ligand: FPP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 6z1n.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
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