Receptor
PDB id Resolution Class Description Source Keywords
6LCF 1.92 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF BETA-L-ARABINOBIOSE BINDING PROTEIN - N BIFIDOBACTERIUM LONGUM SUBSTRATE-BINDING PROTEIN OF ABC TRANSPORTER SUGAR BINDING
Ref.: STRUCTURAL ANALYSIS OF BETA-L-ARABINOBIOSE-BINDING IN THE METABOLIC PATHWAY OF HYDROXYPROLINE-RICH GLYCOPROTEINS IN BIFIDOBACTERIUM LONGUM. FEBS J. V. 287 5114 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FUB FUB C:1;
D:1;
 Valid;
Valid;
 none;
none;
 Kd = 0.15 uM
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6LCF 1.92 Å NON-ENZYME: TRANSPORT CRYSTAL STRUCTURE OF BETA-L-ARABINOBIOSE BINDING PROTEIN - N BIFIDOBACTERIUM LONGUM SUBSTRATE-BINDING PROTEIN OF ABC TRANSPORTER SUGAR BINDING
Ref.: STRUCTURAL ANALYSIS OF BETA-L-ARABINOBIOSE-BINDING IN THE METABOLIC PATHWAY OF HYDROXYPROLINE-RICH GLYCOPROTEINS IN BIFIDOBACTERIUM LONGUM. FEBS J. V. 287 5114 2020
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 232 families.
1 6LCE - AHR FUB n/a n/a
2 6LCF Kd = 0.15 uM FUB FUB n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 197 families.
1 6LCE - AHR FUB n/a n/a
2 6LCF Kd = 0.15 uM FUB FUB n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 165 families.
1 6LCE - AHR FUB n/a n/a
2 6LCF Kd = 0.15 uM FUB FUB n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: FUB FUB; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: FUB FUB; Similar ligands found: 28
No: Ligand Similarity coefficient
1 FUB FUB 1.0000
2 AHR FUB 0.9912
3 LLT 0.8946
4 TLF 0.8918
5 3L1 0.8909
6 XYS XYS 0.8860
7 LDC 0.8846
8 TMC 0.8795
9 5AD 0.8770
10 BNY 0.8768
11 5F1 0.8740
12 DBS 0.8717
13 38B 0.8691
14 5CD 0.8686
15 TH4 0.8667
16 GLC GLC 0.8667
17 JVQ 0.8654
18 XDL XYP 0.8647
19 XIF XYP 0.8634
20 URI 0.8628
21 8DA 0.8591
22 DGO Z61 0.8571
23 6WR 0.8562
24 XIL 0.8553
25 KCH 0.8549
26 TIA 0.8543
27 XYP XIF 0.8543
28 IMH 0.8534
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6LCF; Ligand: FUB FUB; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6lcf.bio2) has 19 residues
No: Leader PDB Ligand Sequence Similarity
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