Receptor
PDB id Resolution Class Description Source Keywords
6KAJ 2.22 Å EC: 2.4.2.- CRYSTAL STRUCTURE OF FKRP IN COMPLEX WITH BA ION HOMO SAPIENS GLYCOSYLTRANFERASE PHOSPHO RIBITOYL TRANFERASE TRANSFERASE
Ref.: CRYSTAL STRUCTURES OF FUKUTIN-RELATED PROTEIN (FKRP RIBITOL-PHOSPHATE TRANSFERASE RELATED TO MUSCULAR D NAT COMMUN V. 11 303 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BA C:506;
A:506;
D:506;
B:506;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
137.327 Ba [Ba+2...
CDP RB0 C:504;
B:504;
D:504;
A:504;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
535.292 n/a P(=O)...
NAG B:503;
D:502;
C:503;
B:502;
C:502;
A:502;
A:503;
D:503;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
none;
 submit data
221.208 C8 H15 N O6 CC(=O...
ZN B:501;
C:501;
D:501;
A:501;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6KAJ 2.22 Å EC: 2.4.2.- CRYSTAL STRUCTURE OF FKRP IN COMPLEX WITH BA ION HOMO SAPIENS GLYCOSYLTRANFERASE PHOSPHO RIBITOYL TRANFERASE TRANSFERASE
Ref.: CRYSTAL STRUCTURES OF FUKUTIN-RELATED PROTEIN (FKRP RIBITOL-PHOSPHATE TRANSFERASE RELATED TO MUSCULAR D NAT COMMUN V. 11 303 2020
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 12 families.
1 6KAJ - CDP RB0 n/a n/a
2 6KAM - CDP RB0 n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 12 families.
1 6KAJ - CDP RB0 n/a n/a
2 6KAM - CDP RB0 n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 6KAJ - CDP RB0 n/a n/a
2 6KAM - CDP RB0 n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: CDP RB0; Similar ligands found: 41
No: Ligand ECFP6 Tc MDL keys Tc
1 CDP RB0 1 1
2 CDP MG 0.690476 0.943662
3 C2G 0.583333 0.958333
4 C 0.581395 0.90411
5 CAR 0.581395 0.90411
6 C5P 0.581395 0.90411
7 CDP 0.577778 0.917808
8 CDC 0.544554 0.807229
9 HF4 0.542553 0.917808
10 CTP 0.542553 0.917808
11 CDM 0.539216 0.896104
12 7XL 0.536082 0.945205
13 2TM 0.53125 0.906667
14 0RC 0.520408 0.92
15 C5P SIA 0.5 0.945946
16 C5G 0.490566 0.918919
17 CXY 0.485981 0.918919
18 CTN 0.482353 0.859155
19 AR3 0.482353 0.859155
20 FN5 0.471074 0.873418
21 FZQ 0.466019 0.8
22 G G 6MZ C 0.463415 0.839506
23 I5A 0.45977 0.794521
24 NCC 0.448 0.92
25 G C 0.448 0.839506
26 A7R 0.444444 0.906667
27 CSF 0.444444 0.873418
28 1AA 0.439655 0.858974
29 CSQ 0.438596 0.881579
30 CSV 0.438596 0.881579
31 PMT 0.434426 0.829268
32 CTP C C C C 0.433333 0.890411
33 MCN 0.428571 0.77907
34 UDP UDP 0.428571 0.887324
35 DCP MG 0.423077 0.90411
36 HQ5 0.422018 0.741573
37 C3P 0.421053 0.890411
38 YSC 0.408696 0.75
39 16B 0.408163 0.844156
40 UDP GAL 0.401786 0.890411
41 91P 0.401575 0.809524
Similar Ligands (3D)
Ligand no: 1; Ligand: CDP RB0; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6KAJ; Ligand: CDP RB0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6kaj.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 6KAJ; Ligand: CDP RB0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 6kaj.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 6KAJ; Ligand: CDP RB0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 6kaj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 6KAJ; Ligand: CDP RB0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 6kaj.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
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