Receptor
PDB id Resolution Class Description Source Keywords
6FUV 2 Å NON-ENZYME: BINDING STRUCTURE OF A MANNO-OLIGOSACCHARIDE SPECIFIC SOLUTE BINDING BLMNBP2 FROM BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS ATCC 27C OMPLEX WITH MANNOTRIOSE BIFIDOBACTERIUM ABC-TRANSPORTER BETA-MANNOTRIOSE SOLUTE BINDING PROTEIN TPROTEIN
Ref.: TWO BINDING PROTEINS OF THE ABC TRANSPORTER THAT CO GROWTH OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS AT ON BETA-MANNAN POSSESS DISTINCT MANNO-OLIGOSACCHARIDE-BINDING PROFILES. MOL.MICROBIOL. V. 112 114 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PGE A:603;
A:602;
A:601;
A:605;
 Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
 submit data
150.173 C6 H14 O4 C(COC...
P33 A:607;
A:606;
 Invalid;
Invalid;
 none;
none;
 submit data
326.383 C14 H30 O8 C(COC...
BMA BMA BMA B:1;
 Valid;
 none;
 Kd = 0.000000064 M
n/a n/a
ACT A:604;
 Invalid;
 none;
 submit data
59.044 C2 H3 O2 CC(=O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6FUV 2 Å NON-ENZYME: BINDING STRUCTURE OF A MANNO-OLIGOSACCHARIDE SPECIFIC SOLUTE BINDING BLMNBP2 FROM BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS ATCC 27C OMPLEX WITH MANNOTRIOSE BIFIDOBACTERIUM ABC-TRANSPORTER BETA-MANNOTRIOSE SOLUTE BINDING PROTEIN TPROTEIN
Ref.: TWO BINDING PROTEINS OF THE ABC TRANSPORTER THAT CO GROWTH OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS AT ON BETA-MANNAN POSSESS DISTINCT MANNO-OLIGOSACCHARIDE-BINDING PROFILES. MOL.MICROBIOL. V. 112 114 2019
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 197 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
4 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 165 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
4 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BMA BMA BMA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BMA BMA BMA; Similar ligands found: 15
No: Ligand Similarity coefficient
1 BMA BMA BMA 1.0000
2 MAN BMA BMA 0.9716
3 GCU MAV MAW 0.9466
4 BGC BGC BGC 0.9306
5 BGC OXZ BGC 0.9304
6 BMA BMA BGC 0.9252
7 G2I 0.9233
8 GLC BGC BGC 0.9188
9 GCS GCS GCS 0.9140
10 GTM BGC BGC 0.9006
11 GLC SHD Z6H 0.8986
12 GLC GLC GLC 0.8877
13 LGU MAV BEM 0.8850
14 SGC SGC BGC 0.8818
15 GS1 GLC GS1 0.8764
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6FUV; Ligand: BMA BMA BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6fuv.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
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