Receptor
PDB id Resolution Class Description Source Keywords
6CUL 2.3 Å EC: 7.-.-.- PVDF OF PYOVERDIN BIOSYNTHESIS IS A STRUCTURALLY UNIQUE N10- FORMYLTETRAHYDROFOLATE-DEPENDENT FORMYLTRANSFERASE PSEUDOMONAS AERUGINOSA PAO1 N10-FORMYLTETRAHYDROFOLATE-DEPENDENT FORMYLTRANSFERASE TRAN
Ref.: PVDF OF PYOVERDIN BIOSYNTHESIS IS A STRUCTURALLY UN N10-FORMYLTETRAHYDROFOLATE-DEPENDENT FORMYLTRANSFER ARCH. BIOCHEM. BIOPHYS. V. 664 40 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FGD D:301;
H:301;
E:301;
A:301;
C:301;
F:301;
G:301;
 Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
none;
none;
none;
 submit data
439.421 C21 H21 N5 O6 c1cc(...
CIT C:302;
E:302;
F:302;
H:302;
A:302;
D:302;
B:301;
G:302;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
none;
 submit data
192.124 C6 H8 O7 C(C(=...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6CUL 2.3 Å EC: 7.-.-.- PVDF OF PYOVERDIN BIOSYNTHESIS IS A STRUCTURALLY UNIQUE N10- FORMYLTETRAHYDROFOLATE-DEPENDENT FORMYLTRANSFERASE PSEUDOMONAS AERUGINOSA PAO1 N10-FORMYLTETRAHYDROFOLATE-DEPENDENT FORMYLTRANSFERASE TRAN
Ref.: PVDF OF PYOVERDIN BIOSYNTHESIS IS A STRUCTURALLY UN N10-FORMYLTETRAHYDROFOLATE-DEPENDENT FORMYLTRANSFER ARCH. BIOCHEM. BIOPHYS. V. 664 40 2019
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 319 families.
1 6CUL - FGD C21 H21 N5 O6 c1cc(ccc1C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 271 families.
1 6CUL - FGD C21 H21 N5 O6 c1cc(ccc1C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 223 families.
1 6CUL - FGD C21 H21 N5 O6 c1cc(ccc1C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: FGD; Similar ligands found: 39
No: Ligand ECFP6 Tc MDL keys Tc
1 FGD 1 1
2 DZF 0.655914 0.966102
3 CB3 0.628866 0.888889
4 PFG 0.575472 0.861538
5 DHF 0.535354 0.846154
6 FOL 0.524752 0.95
7 83A 0.504854 0.904762
8 THF 0.490566 0.763889
9 9L9 0.484211 0.772727
10 29C 0.477064 0.919355
11 3TZ 0.477064 0.904762
12 28Z 0.477064 0.919355
13 29D 0.477064 0.919355
14 C2F 0.476636 0.753425
15 FFO 0.472222 0.785714
16 1YJ 0.471698 0.846154
17 THG 0.471698 0.846154
18 3YA 0.466667 0.830769
19 FON 0.463636 0.785714
20 LYA 0.460784 0.857143
21 NHS 0.451923 0.947368
22 3Y9 0.447619 0.84375
23 DQB 0.446602 0.948276
24 04J 0.446602 0.836066
25 TMF 0.445455 0.72
26 VSV 0.444444 0.671642
27 TLL 0.439655 0.733333
28 8DM 0.432099 0.614035
29 MHF 0.412281 0.714286
30 DXY 0.411215 0.694444
31 DXZ 0.411215 0.694444
32 G71 0.410714 0.791045
33 21V 0.409091 0.794118
34 DDF 0.409091 0.794118
35 GHW 0.407407 0.80597
36 T04 0.40708 0.652778
37 MEF 0.403509 0.714286
38 GUE 0.403509 0.743243
39 GHC 0.4 0.794118
Similar Ligands (3D)
Ligand no: 1; Ligand: FGD; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6cul.bio5) has 4 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 6cul.bio8) has 7 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 6cul.bio7) has 6 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 6cul.bio3) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 6cul.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 6cul.bio4) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 6CUL; Ligand: FGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 6cul.bio6) has 4 residues
No: Leader PDB Ligand Sequence Similarity
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