Receptor
PDB id Resolution Class Description Source Keywords
6BR9 2.2 Å NON-ENZYME: OTHER STRUCTURE OF A6 REVEALS A NOVEL LIPID TRANSPORTER FOWLPOX VIRUS (STRAIN NVSL) POXVIRUS A6 LIPID BINDING MEMBRANE BIOGENESIS LIPID BINDPROTEIN
Ref.: STRUCTURE OF A LIPID-BOUND VIRAL MEMBRANE ASSEMBLY REVEALS A MODALITY FOR ENCLOSING THE LIPID BILAYER. PROC. NATL. ACAD. SCI. V. 115 7028 2018 U.S.A.
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
6OU A:402;
A:401;
A:405;
A:403;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
717.996 C39 H76 N O8 P CCCCC...
PGV A:404;
 Valid;
 none;
 submit data
749.007 C40 H77 O10 P CCCCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6BR9 2.2 Å NON-ENZYME: OTHER STRUCTURE OF A6 REVEALS A NOVEL LIPID TRANSPORTER FOWLPOX VIRUS (STRAIN NVSL) POXVIRUS A6 LIPID BINDING MEMBRANE BIOGENESIS LIPID BINDPROTEIN
Ref.: STRUCTURE OF A LIPID-BOUND VIRAL MEMBRANE ASSEMBLY REVEALS A MODALITY FOR ENCLOSING THE LIPID BILAYER. PROC. NATL. ACAD. SCI. V. 115 7028 2018 U.S.A.
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6BR9 - PGV C40 H77 O10 P CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6BR9 - PGV C40 H77 O10 P CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 6BR9 - PGV C40 H77 O10 P CCCCCCCCCC....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 6OU; Similar ligands found: 102
No: Ligand ECFP6 Tc MDL keys Tc
1 LOP 1 1
2 L9Q 1 1
3 6OU 1 1
4 RXY 0.985294 1
5 ZPE 0.942857 1
6 GP7 0.868421 1
7 PEF 0.865672 0.980769
8 8PE 0.865672 0.980769
9 PTY 0.865672 0.980769
10 PEH 0.865672 0.980769
11 3PE 0.865672 0.980769
12 PEV 0.865672 0.980769
13 9PE 0.852941 0.980769
14 PCW 0.826667 0.79661
15 PEK 0.818182 1
16 D3D 0.776316 0.830189
17 PGW 0.776316 0.830189
18 P50 0.769231 0.924528
19 DR9 0.766234 0.830189
20 PGV 0.766234 0.830189
21 P6L 0.75641 0.830189
22 EPH 0.752941 1
23 D21 0.75 0.792453
24 OZ2 0.746835 0.830189
25 PSC 0.73494 0.79661
26 HGX 0.706667 0.779661
27 PLD 0.706667 0.779661
28 PC7 0.706667 0.779661
29 LIO 0.706667 0.779661
30 PX4 0.706667 0.779661
31 6PL 0.706667 0.779661
32 HGP 0.706667 0.779661
33 PEE 0.702703 0.962264
34 B7N 0.695122 0.711864
35 CD4 0.675676 0.807692
36 P5S 0.662338 0.888889
37 PGT 0.657895 0.811321
38 XP5 0.657895 0.779661
39 LHG 0.657895 0.811321
40 8SP 0.649351 0.888889
41 PIE 0.647059 0.666667
42 L9R 0.642857 0.728814
43 POV 0.642857 0.728814
44 LBN 0.642857 0.728814
45 P3A 0.627907 0.796296
46 F57 0.625 0.773585
47 7PH 0.625 0.773585
48 3PH 0.625 0.773585
49 LPP 0.625 0.773585
50 6PH 0.625 0.773585
51 7P9 0.616438 0.773585
52 PX8 0.616438 0.754717
53 PX2 0.616438 0.754717
54 PCK 0.616279 0.741935
55 HXG 0.61039 0.779661
56 CN3 0.609756 0.807692
57 PA8 0.60274 0.754717
58 LPX 0.592105 0.961538
59 T7X 0.586957 0.711864
60 CN6 0.585366 0.807692
61 PII 0.585366 0.694915
62 42H 0.583333 0.830508
63 PD7 0.575342 0.773585
64 PGK 0.574713 0.767857
65 PSF 0.56962 0.888889
66 44G 0.564103 0.811321
67 PIZ 0.563218 0.694915
68 CDL 0.5625 0.735849
69 8ND 0.56 0.716981
70 M7U 0.555556 0.773585
71 DGG 0.555556 0.767857
72 DLP 0.554348 0.728814
73 PIF 0.552941 0.683333
74 S12 0.552941 0.888889
75 IP9 0.551724 0.694915
76 NKP 0.551282 0.792453
77 PG8 0.536585 0.777778
78 MC3 0.535714 0.711864
79 PCF 0.535714 0.711864
80 PC1 0.535714 0.711864
81 PIO 0.534091 0.683333
82 52N 0.534091 0.683333
83 44E 0.527027 0.773585
84 PDK 0.525253 0.819672
85 AGA 0.505882 0.777778
86 OLC 0.5 0.603774
87 OLB 0.5 0.603774
88 MVC 0.480519 0.603774
89 BQ9 0.476744 0.615385
90 LPC 0.47619 0.813559
91 LP3 0.47619 0.813559
92 K6G 0.47619 0.813559
93 LAP 0.47619 0.813559
94 78N 0.467532 0.603774
95 78M 0.467532 0.603774
96 OPC 0.458333 0.783333
97 1WV 0.435897 0.603774
98 NKO 0.435897 0.773585
99 NKN 0.435897 0.773585
100 3XU 0.428571 0.738462
101 CN5 0.420455 0.826923
102 SPU 0.4 0.758065
Ligand no: 2; Ligand: PGV; Similar ligands found: 118
No: Ligand ECFP6 Tc MDL keys Tc
1 DR9 1 1
2 PGV 1 1
3 PGW 0.985507 1
4 D3D 0.985507 1
5 OZ2 0.971831 1
6 P6L 0.957747 1
7 PGT 0.855072 0.977778
8 LHG 0.855072 0.977778
9 RXY 0.779221 0.830189
10 L9Q 0.766234 0.830189
11 LOP 0.766234 0.830189
12 6OU 0.766234 0.830189
13 P50 0.75 0.826923
14 CD4 0.75 0.933333
15 ZPE 0.746835 0.830189
16 44G 0.746479 0.977778
17 PCW 0.7375 0.706897
18 PGK 0.7375 0.916667
19 P3A 0.731707 0.956522
20 D21 0.72973 0.913043
21 DGG 0.710843 0.916667
22 B7N 0.678571 0.843137
23 CN3 0.675 0.933333
24 GP7 0.674419 0.830189
25 PSC 0.659091 0.706897
26 CN6 0.65 0.933333
27 PEH 0.649351 0.811321
28 PEV 0.649351 0.811321
29 PTY 0.649351 0.811321
30 3PE 0.649351 0.811321
31 8PE 0.649351 0.811321
32 PEF 0.649351 0.811321
33 P5S 0.64557 0.826923
34 PEE 0.641026 0.796296
35 9PE 0.641026 0.811321
36 8SP 0.632911 0.826923
37 PEK 0.632184 0.830189
38 PX4 0.625 0.689655
39 HGP 0.625 0.689655
40 PLD 0.625 0.689655
41 PC7 0.625 0.689655
42 LIO 0.625 0.689655
43 6PL 0.625 0.689655
44 HGX 0.625 0.689655
45 PG8 0.620253 0.934783
46 PIE 0.613636 0.788462
47 F57 0.608108 0.891304
48 LPP 0.608108 0.891304
49 7PH 0.608108 0.891304
50 3PH 0.608108 0.891304
51 6PH 0.608108 0.891304
52 7P9 0.6 0.891304
53 PX2 0.6 0.869565
54 PX8 0.6 0.869565
55 S12 0.595238 0.826923
56 LBN 0.590909 0.666667
57 L9R 0.590909 0.666667
58 POV 0.590909 0.666667
59 EPH 0.589474 0.830189
60 MVC 0.589041 0.733333
61 OLC 0.589041 0.733333
62 OLB 0.589041 0.733333
63 PA8 0.586667 0.869565
64 AGA 0.585366 0.934783
65 XP5 0.580247 0.689655
66 PII 0.571429 0.823529
67 42H 0.569767 0.741379
68 CDL 0.567901 0.847826
69 PD7 0.56 0.891304
70 3TF 0.55914 0.618182
71 T7X 0.557895 0.843137
72 NKP 0.556962 0.913043
73 PSF 0.555556 0.826923
74 78N 0.554054 0.733333
75 78M 0.554054 0.733333
76 PIZ 0.550562 0.788462
77 PCK 0.549451 0.655738
78 1O2 0.548387 0.618182
79 TGL 0.542857 0.644444
80 M7U 0.542169 0.891304
81 1WV 0.540541 0.733333
82 PIF 0.54023 0.807692
83 IP9 0.539326 0.788462
84 HXG 0.536585 0.689655
85 PIO 0.522222 0.807692
86 52N 0.522222 0.807692
87 1EM 0.513514 0.688889
88 DDR 0.513514 0.688889
89 DGA 0.513514 0.688889
90 L2C 0.513514 0.688889
91 FAW 0.513514 0.688889
92 44E 0.513158 0.891304
93 DLP 0.510417 0.666667
94 1L2 0.504951 0.618182
95 MC3 0.488636 0.649123
96 PCF 0.488636 0.649123
97 PC1 0.488636 0.649123
98 PDK 0.485437 0.704918
99 BQ9 0.482759 0.711111
100 LPX 0.481928 0.792453
101 GGD 0.481132 0.625
102 LBR 0.469136 0.638298
103 1QW 0.465753 0.711111
104 GYM 0.465753 0.711111
105 EKG 0.465753 0.711111
106 LPC 0.465116 0.724138
107 LAP 0.465116 0.724138
108 K6G 0.465116 0.724138
109 LP3 0.465116 0.724138
110 PGM 0.457831 0.913043
111 NKN 0.443038 0.891304
112 NKO 0.443038 0.891304
113 SQD 0.43299 0.630769
114 2JT 0.430556 0.652174
115 G2A 0.430556 0.652174
116 CN5 0.426966 0.913043
117 DGD 0.421569 0.607143
118 OPC 0.405941 0.694915
Similar Ligands (3D)
Ligand no: 1; Ligand: 6OU; Similar ligands found: 0
No: Ligand Similarity coefficient
Ligand no: 2; Ligand: PGV; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6BR9; Ligand: 6OU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6br9.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 6BR9; Ligand: 6OU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 6br9.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 6BR9; Ligand: 6OU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 6br9.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 6BR9; Ligand: PGV; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 6br9.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 6BR9; Ligand: 6OU; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 6br9.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
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