Receptor
PDB id Resolution Class Description Source Keywords
4Z0U 2 Å EC: 3.1.26.4 RNASE HI/SSB-CT COMPLEX ESCHERICHIA COLI O139:H28 RIBONUCLEASE PEPTIDE COMPLEX HYDROLASE-PEPTIDE COMPLEX
Ref.: INTERACTION WITH SINGLE-STRANDED DNA-BINDING PROTEI STIMULATES ESCHERICHIA COLI RIBONUCLEASE HI ENZYMAT ACTIVITY. J.BIOL.CHEM. V. 290 14626 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
TRP MET ASP PHE ASP ASP ASP ILE PRO PHE E:174;
D:174;
Valid;
Valid;
Atoms found LESS than expected: % Diff = 0.62;
Atoms found LESS than expected: % Diff = 0.62;
Kd = 2 uM
489.549 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4Z0U 2 Å EC: 3.1.26.4 RNASE HI/SSB-CT COMPLEX ESCHERICHIA COLI O139:H28 RIBONUCLEASE PEPTIDE COMPLEX HYDROLASE-PEPTIDE COMPLEX
Ref.: INTERACTION WITH SINGLE-STRANDED DNA-BINDING PROTEI STIMULATES ESCHERICHIA COLI RIBONUCLEASE HI ENZYMAT ACTIVITY. J.BIOL.CHEM. V. 290 14626 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 4Z0U Kd = 2 uM TRP MET ASP PHE ASP ASP ASP ILE PRO PHE n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4Z0U Kd = 2 uM TRP MET ASP PHE ASP ASP ASP ILE PRO PHE n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4Z0U Kd = 2 uM TRP MET ASP PHE ASP ASP ASP ILE PRO PHE n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: TRP MET ASP PHE ASP ASP ASP ILE PRO PHE; Similar ligands found: 126
No: Ligand ECFP6 Tc MDL keys Tc
1 TRP MET ASP PHE ASP ASP ASP ILE PRO PHE 1 1
2 TRP ASP ILE PRO PHE 1 1
3 TYR MET ASP PHE ASP ASP ASP ILE PRO PHE 0.701149 0.942308
4 ASP TYR GLU PRO ILE PRO GLU GLU ALA PHE 0.598425 0.83871
5 ASP PHE GLU GLU ILE PRO GLU GLU TYS 0.596774 0.702703
6 ALA THR PRO PHE GLN GLU 0.55102 0.857143
7 ALA ILE ALA TYR PHE ILE PRO ASP GLN ALA 0.548387 0.866667
8 PHE GLU ALA ILE PRO ALA GLU TYR LEU 0.546875 0.836066
9 ASP PHE GLU GLU ILE PRO GLY GLU TYS LEU 0.544776 0.684211
10 PHE ASN PHE PRO GLN ILE THR 0.533333 0.83871
11 ASP PHE GLU GLU ILE PRO GLY GLU TYR LEU 0.533333 0.825397
12 DPN PRO DAR ILE NH2 0.53211 0.786885
13 THR PRO PRO SER PRO PHE 0.527778 0.786885
14 GLY SER ASP PRO PHE LYS 0.526786 0.8
15 TYR PRO TYR 0.526316 0.779661
16 SER ASP ILE LEU PHE PRO ALA ASP SER 0.52459 0.866667
17 LYS GLN GLU PRO GLN GLU ILE ASP PHE 0.523077 0.945455
18 ASP ARG VAL TYR ILE HIS PRO PHE 0.517241 0.722222
19 ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU 0.514286 0.684211
20 ACE PRO ALA PRO PHE 0.514019 0.842105
21 PHE GLN PRO GLN ASN GLY GLN PHE ILE 0.511811 0.866667
22 ASP PHE GLU GLU ILE PRO GLY GLU PTR 0.510791 0.753623
23 DPN PRO ARG 0.509804 0.766667
24 LEU ASN PHE PRO ILE SER PRO 0.504202 0.8125
25 PHE LEU PRO SER ASP PHE PHE PRO SER VAL 0.5 0.796875
26 PHE TYR ALA PRO GLU PRO ILE THR SER LEU 0.492754 0.764706
27 LEU PRO PHE ASP LYS THR THR ILE MET 0.492647 0.8125
28 TYR PRO ASN VAL ASN ILE HIS ASN PHE 0.485714 0.764706
29 ILE THR ASP GLN VAL PRO PHE SER VAL 0.485075 0.83871
30 LYS TYR TYR SER ILE ILE PRO HIS SER ILE 0.484848 0.73913
31 TYR TYR SER ILE ILE PRO HIS SER ILE 0.484848 0.73913
32 LEU GLN ARG VAL LEU SEP ALA PRO PHE 0.481203 0.694444
33 DPN PRO DAR DTH NH2 0.477876 0.734375
34 LYS PRO ILE VAL GLN TYR ASP ASN PHE 0.475177 0.787879
35 LEU PRO PHE ASP ARG THR THR ILE MET 0.475177 0.722222
36 GLY TYR GLN ASP TYR GLU PRO GLU ALA 0.474576 0.844828
37 PHE ASN ARG PRO VAL 0.474576 0.78125
38 ALA LEU ASP LEU PHE 0.473118 0.62963
39 TYR LEU GLY GLY PRO ASP PHE PRO THR ILE 0.472222 0.787879
40 TYR PRO PHE PHE NH2 0.472222 0.75
41 ILE MET ASP GLN VAL PRO PHE SER VAL 0.471014 0.8
42 ASP PHE SER ILE 0.47 0.610169
43 LEU PRO PHE ASP LYS SER THR ILE MET 0.468531 0.787879
44 LYS LEU PRO ALA GLN PHE TYR ILE LEU 0.467626 0.809524
45 GLN LEU SER PRO PHE PRO PHE ASP LEU 0.465649 0.809524
46 PHE ALA PRO GLY PHE PHE PRO TYR LEU 0.465649 0.769231
47 TYR GLN PHE GLY PRO ASP PHE PRO ILE ALA 0.465278 0.8125
48 SER VAL PRO ILE 0.464646 0.827586
49 TRP GLU TYR ILE PRO ASN VAL 0.460993 0.776119
50 ARG ILE PRO SER TYR ARG TYR ARG TYR 0.458647 0.684932
51 ALA VAL PRO ILE 0.458333 0.886792
52 SER ILE TYR PHE TPO PRO GLU LEU TYR ASP 0.456376 0.712329
53 ARG ARG LEU PRO ILE PHE SER ARG LEU 0.455882 0.75
54 ALA VAL PRO TRP 0.455357 0.827586
55 LEU SER SER PRO VAL THR LYS SER PHE 0.453846 0.806452
56 ALA VAL PRO ILE ALA GLN LYS 0.453608 0.849057
57 TYR MET PHE PRO ASN ALA PRO TYR LEU 0.453237 0.71831
58 ALA DAL PRO PHE NIT 0.452174 0.666667
59 ASP PHE GLU GLU ILE 0.451923 0.716981
60 ASN TYR THR PRO GLY PRO GLY ILE ARG PHE 0.446667 0.722222
61 GLU SER ASP PRO ILE VAL ALA GLN TYR 0.446043 0.8
62 ILE ARG ALA ALA PRO PRO PRO LEU PHE 0.444444 0.757576
63 PHE PRO THR LYS ASP VAL ALA LEU 0.443609 0.85
64 PHE ALA PRO GLY ASN TYR PRO ALA LEU 0.442029 0.75
65 LYS THR PHE PRO PRO THR GLU PRO LYS 0.441176 0.833333
66 ILE PRO ILE 0.44086 0.884615
67 ASN ARG PRO VAL TYR ILE PRO ARG PRO PRO 0.440298 0.710145
68 PHE SER HIS PRO GLN ASN THR 0.440298 0.731343
69 SER LEU ILE PRO TPO PRO ASP LYS 0.439394 0.714286
70 PHE PRO ARG 0.439252 0.733333
71 DPN PRO DAR CYS NH2 0.438596 0.709677
72 LEU PHE GLY TYR PRO VAL TYR VAL 0.43609 0.806452
73 GLU PTR LEU GLY LEU ASP VAL PRO VAL 0.433962 0.907407
74 GLU GLU PRO THR VAL ILE LYS LYS TYR 0.431655 0.83871
75 SER PRO HIS ASN PRO ILE SER ASP VAL ASP 0.431034 0.793651
76 ARG GLN PHE GLY PRO ASP PHE PRO THR ILE 0.430464 0.742857
77 LEU PRO PHE GLU ARG ALA THR ILE MET 0.430464 0.732394
78 GLU PHE SER PRO 0.429907 0.842105
79 PTR VAL PRO MET LEU 0.428571 0.7
80 GLN VAL PRO SER ASP PRO TYR ASN TYR 0.428571 0.746269
81 VAL TYR ILE HIS PRO PHE 0.427536 0.753846
82 GLN ASN TYR PRO ILE VAL GLN 0.426357 0.83871
83 ACE PRO ALA PRO TYR 0.426087 0.786885
84 DHI PRO PHE HIS LEU LEU VAL TYR 0.425676 0.753846
85 SER SER PHE TYR PRO SEP ALA GLU GLY 0.425373 0.7
86 LYS PRO PHE PTR VAL ASN VAL GLU PHE 0.424658 0.694444
87 LEU PRO PRO LEU ASP ILE THR PRO TYR 0.42446 0.83871
88 TYR PRO LYS ARG ILE ALA 0.424242 0.746269
89 TRP PRO TRP 0.422018 0.793103
90 ARG ILE ILE PRO ARG HIS LEU GLN LEU 0.42069 0.746269
91 ASN TYR THR PRO GLY PRO GLY THR ARG PHE 0.42 0.684932
92 LEU LEU PHE GLY LYS PRO VAL TYR VAL 0.41958 0.822581
93 ALA PRO ASP THR ARG PRO ALA PRO 0.419355 0.695652
94 ACE GLN PM3 GLU GLU ILE PRO 0.419355 0.822581
95 MIN 0.419048 0.741379
96 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.418919 0.784615
97 ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 0.418301 0.675676
98 ARG MET PHE PRO ASN ALA PRO TYR LEU 0.416107 0.653846
99 ALA VAL PRO ILE ALA GLN 0.415929 0.890909
100 ASN TRP SER HIS PRO GLN PHE GLU LYS 0.414815 0.783333
101 TYR SEP PRO THR SEP PRO SER 0.414634 0.676056
102 LEU LEU PHE GLY TYR PRO VAL TYR VAL 0.414286 0.806452
103 LEU LEU PHE GLY PHE PRO VAL TYR VAL 0.414286 0.806452
104 MET TYR TRP TYR PRO TYR 0.413534 0.716418
105 01B PRO PRO ALA NH2 0.412844 0.779661
106 PHE ALA PRO GLY ASN TYI PRO ALA LEU 0.412587 0.69863
107 MAA LYS PRO PHE 0.412281 0.851852
108 PHE GLU ASP ASN PHE VAL PRO 0.41129 0.806452
109 SIN ALA ALA PRO PHE NIT 0.409449 0.710145
110 THR PRO TYR ASP ILE ASN GLN MET LEU 0.408163 0.764706
111 LYS PRO LYS 0.408163 0.811321
112 ALA ASN SER ARG PHE PRO THR SER ILE ILE 0.406897 0.764706
113 VAL MET ALA PRO ARG THR LEU PHE LEU 0.406897 0.694444
114 LEU PRO PHE GLU LYS SER THR VAL MET 0.406897 0.772727
115 ALA ASN SER ARG LEU PRO THR SER ILE ILE 0.405172 0.803279
116 ALA VAL ALA PHE TYR ILE PRO ASP GLN ALA 0.404762 0.803279
117 VAL ORN LEU DPN PRO VAL ORN LEU DPN PRO 0.40458 0.79661
118 PRO GLN PTR GLU GLU ILE PRO ILE 0.404255 0.761194
119 ACE PHE HIS PRO ALA NH2 0.403361 0.766667
120 GLU LEU PRO LEU VAL LYS ILE 0.403226 0.890909
121 GLU ARG THR ILE PRO ILE THR ARG GLU 0.403101 0.746269
122 ASN ASP TRP LEU LEU PRO SER TYR 0.402685 0.71831
123 ALA PRO GLN PRO ALA PRO GLU ASN ALA TYR 0.40146 0.78125
124 MAA LPH PRO PHE 4LZ 0.40146 0.704225
125 PRO GLN PTR GLU PTR ILE PRO ALA 0.401408 0.73913
126 ALA ASN SER ARG TYR PRO THR SER ILE ILE 0.4 0.732394
Similar Binding Sites (Proteins are less than 50% similar to leader)
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