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Receptor
PDB id Resolution Class Description Source Keywords
4EBZ 1.79 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF THE ECTODOMAIN OF A RECEPTOR LIKE KINAS ARABIDOPSIS THALIANA PATHOGEN-ASSOCIATED MOLECULAR PATTERNSPATTERN RECOGNITION RCHITIN ELICITOR RECEPTOR KINASE 1 LYSM LYSINE MOTIF CHITOLIGOMER TRANSFERASE
Ref.: CHITIN-INDUCED DIMERIZATION ACTIVATES A PLANT IMMUN RECEPTOR. SCIENCE V. 336 1160 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG NAG A:801;
A:803;
A:805;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
408.404 n/a O=C(N...
NAG NAG BMA MAN BMA A:807;
Invalid;
none;
submit data n/a n/a n/a n/a
NAG NAG NAG NAG A:812;
Valid;
none;
submit data
814.792 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4EBZ 1.79 Å EC: 2.-.-.- CRYSTAL STRUCTURE OF THE ECTODOMAIN OF A RECEPTOR LIKE KINAS ARABIDOPSIS THALIANA PATHOGEN-ASSOCIATED MOLECULAR PATTERNSPATTERN RECOGNITION RCHITIN ELICITOR RECEPTOR KINASE 1 LYSM LYSINE MOTIF CHITOLIGOMER TRANSFERASE
Ref.: CHITIN-INDUCED DIMERIZATION ACTIVATES A PLANT IMMUN RECEPTOR. SCIENCE V. 336 1160 2012
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 269 families.
1 4EBZ - NAG NAG NAG NAG n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 237 families.
1 4EBZ - NAG NAG NAG NAG n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 4EBZ - NAG NAG NAG NAG n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAG NAG NAG NAG; Similar ligands found: 126
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG NAG NAG 1 1
2 NAG NAG NAG NAG 1 1
3 NAG NAG 0.890625 0.962264
4 NAG NDG 0.890625 0.962264
5 NAG NAG BMA 0.830986 0.981132
6 NAG NDG BMA 0.830986 0.981132
7 NAG NAG BMA MAN 0.7375 0.981132
8 NAG NAG BMA MAN NAG 0.735632 1
9 NAG NAG BMA BMA 0.730769 0.981481
10 NAG NAG BMA MAN MAN NAG NAG 0.680851 1
11 NAG NAG NAG NDG 0.680556 0.924528
12 NAG NAG NAG NAG NAG 0.680556 0.924528
13 NDG NAG NAG NDG 0.680556 0.924528
14 NAG NAG NDG 0.680556 0.924528
15 NAG NAG NAG NAG NDG 0.680556 0.924528
16 NAG NAG NAG NAG NAG NAG NAG NAG 0.680556 0.924528
17 NAG NAG NDG NAG 0.680556 0.924528
18 CTO 0.680556 0.924528
19 NAG NAG NAG NAG NAG NAG 0.680556 0.924528
20 NDG NAG NAG NAG 0.680556 0.924528
21 NDG NAG NAG 0.680556 0.924528
22 NAG BMA 0.647887 0.90566
23 NOJ NAG NAG 0.62963 0.894737
24 NOJ NAG NAG NAG 0.62963 0.912281
25 Z4S NAG NAG 0.62963 0.859649
26 NDG NAG 0.625 0.90566
27 CBS CBS 0.625 0.90566
28 CBS 0.625 0.90566
29 NAG GDL 0.625 0.90566
30 NAG NAG BMA MAN MAN MAN MAN 0.584158 0.981132
31 A2G MBG 0.573333 0.851852
32 MBG A2G 0.573333 0.851852
33 NGA GAL 0.565789 0.867925
34 GAL NAG GAL 0.554217 0.886792
35 NAG NAG NGT 0.551724 0.777778
36 GAL NAG GAL BGC 0.551724 0.886792
37 NGA GAL BGC 0.55 0.849057
38 GAL NAG 0.546667 0.849057
39 NAG GAL 0.546667 0.849057
40 DLD 0.541176 0.790323
41 NAG AMU NAG AMV 0.533333 0.890909
42 3QL 0.530864 0.842105
43 GAL NAG MAN 0.52439 0.849057
44 NAG GAL NAG 0.52381 0.90566
45 MAN MAN NAG 0.52381 0.886792
46 NAG A2G 0.519481 0.90566
47 NAG NGA 0.519481 0.90566
48 TCG 0.517647 0.790323
49 6Y2 0.516854 0.720588
50 AO3 0.516129 0.710145
51 NAA NAA AMI 0.516129 0.710145
52 NAG MAN BMA 0.506024 0.849057
53 NAG GAL GAL NAG GAL 0.505747 0.90566
54 NAG MBG 0.5 0.851852
55 GAL NGA A2G 0.5 0.90566
56 NAG NAG FUL BMA MAN MAN NAG GAL 0.495495 1
57 UMG 0.494845 0.816667
58 NAG MAN BMA MAN NAG GAL 0.49 0.90566
59 NAG GAL GAL NAG 0.488636 0.90566
60 GAL NAG GAL NAG GAL NAG 0.488636 0.924528
61 NAG GAL BGC 0.488372 0.849057
62 NAG MAN 0.4875 0.886792
63 GLC GAL NAG GAL 0.483146 0.849057
64 LAT NAG GAL 0.483146 0.849057
65 NGT NAG 0.482759 0.761905
66 NAG BMA NAG MAN MAN NAG NAG 0.480392 0.924528
67 NGA GLA GAL BGC 0.477778 0.849057
68 AH0 NAG 0.477273 0.844828
69 SN5 SN5 0.475 0.754386
70 GUM 0.474227 0.816667
71 NAG MAN MAN 0.465909 0.849057
72 NAG MAN MMA 0.465116 0.851852
73 2F8 0.464789 0.796296
74 MAG 0.464789 0.796296
75 NAG MAN MAN MAN NAG 0.462366 0.90566
76 NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.461538 0.924528
77 NAG MUB 0.460674 0.907407
78 NAG AMU 0.460674 0.907407
79 FUC GAL A2G 0.45977 0.867925
80 A2G GLA FUC 0.45977 0.867925
81 A2G GAL FUC 0.45977 0.867925
82 FUC GLA A2G 0.45977 0.867925
83 NGA GAL FUC 0.45977 0.867925
84 NG1 0.459459 0.709677
85 GN1 0.459459 0.709677
86 A2G GAL NAG FUC 0.458333 0.924528
87 FUC GAL NAG A2G 0.458333 0.924528
88 NAG NAG BMA MAN MAN NAG GAL NAG 0.457944 0.924528
89 NAG NM9 0.454545 0.890909
90 FHY 0.452632 0.859649
91 NAG AH0 0.451613 0.844828
92 NA1 NAA AMI 0.45098 0.7
93 NAG MAN BMA NDG MAN NAG GAL 0.448598 0.924528
94 JXD 0.447619 0.728571
95 GAL NDG 0.443038 0.849057
96 NDG GAL 0.443038 0.849057
97 NLC 0.443038 0.849057
98 5AX 0.442857 0.830189
99 NAG NAG BMA MAN MAN 0.44 0.90566
100 FUC BGC GAL NAG GAL 0.44 0.867925
101 NDG BDP BDP NPO NDG 0.439252 0.720588
102 MMA MAN NAG MAN NAG NAG 0.4375 0.907407
103 FUC BGC GAL NAG 0.4375 0.867925
104 BMA Z4Y NAG 0.43617 0.833333
105 BGC FUC GAL FUC A2G 0.43299 0.886792
106 GLC FUC GAL FUC A2G 0.43299 0.886792
107 GYU 0.432099 0.813559
108 A2G GAL BGC FUC 0.428571 0.867925
109 FUC NAG GAL 0.426966 0.943396
110 SIA GAL NAG 0.425926 0.963636
111 FUC C4W NAG BMA 0.425743 0.875
112 8VZ 0.425 0.888889
113 FUC C4W NAG BMA MAN NAG 0.424779 0.875
114 SN5 SN5 NGT 0.421053 0.6875
115 3YW 0.4125 0.811321
116 FUC NAG 0.411765 0.924528
117 ASN NAG NAG BMA MAN MAN NAG NAG 0.40678 0.894737
118 LEC NGA 0.40625 0.720588
119 NAG GAL FUC FUC A2G 0.405941 0.924528
120 FUC GAL NAG A2G FUC 0.405941 0.924528
121 NAG BDP NAG BDP NAG BDP NAG 0.40404 0.907407
122 NAG MAN MAN MAN NAG GAL NAG GAL 0.401869 0.924528
123 MAN BMA NAG NAG MAN NAG GAL GAL 0.401869 0.924528
124 MA8 0.4 0.821429
125 ALA NAG AH0 DAL 0.4 0.830508
126 FUC C4W NAG BMA MAN MAN NAG NAG 0.4 0.875
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4EBZ; Ligand: NAG NAG NAG NAG; Similar sites found with APoc: 60
This union binding pocket(no: 1) in the query (biounit: 4ebz.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 6FX2 FUC C4W NAG BMA MAN NAG GAL None
2 5OFW 9TW 1.41509
3 5N53 8NB 1.53846
4 2C3H GLC GLC 2.04082
5 5EP2 AZU 2.34375
6 1P9P SAH 2.35849
7 4V0K GDP 2.36686
8 2YOH WMJ 2.85714
9 4PPF FLC 3.30189
10 2OFW ADX 3.36538
11 1X1R GDP 3.37079
12 1S8F GDP 3.38983
13 4ZI2 GNP 3.7594
14 4OPC PGT 3.77358
15 4OPC FDA 3.77358
16 2WOX NDP 3.77358
17 4DCT GDP 3.77358
18 1HFS L04 4.375
19 2HV8 GTP 4.65116
20 4D42 W0I 4.71698
21 4D42 NAP 4.71698
22 4GLL NAD 4.71698
23 1M2O GNP 4.73684
24 2D7C GTP 4.79042
25 1NU4 MLA 5.15464
26 2FXU BID 5.18868
27 2NZ2 ASP 5.18868
28 5H4S RAM 5.18868
29 2WJH FLC 5.42169
30 4C4P GNP 5.60748
31 1YRB GDP 5.66038
32 3A1S GDP 5.81395
33 3OKI OKI 6.13208
34 4C2G ALA ALA ALA ALA 6.13208
35 5LLT DND 6.57277
36 4C2C ALA ALA ALA 6.60377
37 2ATJ BHO 7.07547
38 6GEH FAD 7.07547
39 4GLW NMN 7.07547
40 4GOJ GNP 7.07547
41 2QG6 NMN 7.53769
42 1H9G COA MYR 7.54717
43 2V7Q ATP 7.54717
44 1W0J ADP 7.54717
45 4OGQ 7PH 8.125
46 4B9E FAH 8.30565
47 5LFV SIA GAL NAG 8.49057
48 3WBF API 8.49057
49 3ZIA ADP 8.96226
50 3MJH GTP 9.52381
51 3GCM 5GP 9.7561
52 3Q87 SAM 10.5882
53 3R4S SIA 10.8491
54 4WEI GLC GAL 10.8491
55 3KO0 TFP 11.8812
56 1ZUI SKM 13.0952
57 3X1Z GNP 17.9641
58 1TU3 GNP 18.9873
59 4B8V NDG NAG NAG NAG 20.7547
60 6C1S EFV 26.4151
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