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Receptor
PDB id Resolution Class Description Source Keywords
4BGB 1.34 Å EC: 2.-.-.- NUCLEOTIDE-BOUND CLOSED FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM METHANOPYRUS KANDLERI METHANOPYRUS KANDLERI TRANSFERASE PHOSPHOTRANSFER PSEUDOMUREIN
Ref.: STRUCTURAL CHARACTERIZATION OF THE RIBONUCLEASE H-L ASKHA SUPERFAMILY KINASE MK0840 FROM METHANOPYRUS K ACTA CRYSTALLOGR.,SECT.D V. 69 2440 2013
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG B:1361;
B:1359;
B:1360;
A:1358;
Part of Protein;
Part of Protein;
Invalid;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
K B:1358;
A:1357;
A:1356;
B:1357;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
39.098 K [K+]
GOL B:1356;
A:1355;
A:1354;
B:1355;
B:1354;
B:1353;
A:1353;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
CA A:1359;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
ADP A:1352;
B:1352;
Valid;
Valid;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4BGB 1.34 Å EC: 2.-.-.- NUCLEOTIDE-BOUND CLOSED FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM METHANOPYRUS KANDLERI METHANOPYRUS KANDLERI TRANSFERASE PHOSPHOTRANSFER PSEUDOMUREIN
Ref.: STRUCTURAL CHARACTERIZATION OF THE RIBONUCLEASE H-L ASKHA SUPERFAMILY KINASE MK0840 FROM METHANOPYRUS K ACTA CRYSTALLOGR.,SECT.D V. 69 2440 2013
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 269 families.
1 4BGB - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 237 families.
1 4BGB - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 187 families.
1 4BGB - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4BGB; Ligand: ADP; Similar sites found with APoc: 233
This union binding pocket(no: 1) in the query (biounit: 4bgb.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 3VSV XYP 1.84615
2 5I39 FAD 1.84615
3 4REP FAD 1.84615
4 5VKT NAP 1.84615
5 1EDO NAP 2.04918
6 1TUU ADP 2.15385
7 4JBI NDP 2.15385
8 1TUU PIS 2.15385
9 1OX5 1PR 2.15385
10 1TUU AMP 2.15385
11 4A59 AMP 2.15385
12 1WPQ 13P 2.15385
13 2ZQO NGA 2.30769
14 5D63 FUC GLA GLA 2.38908
15 5FI3 NAP 2.46154
16 2UUU FAD 2.46154
17 3AAQ ARU 2.46154
18 2CUN 3PG 2.46154
19 3CV6 NAP 2.47678
20 3CV6 HXS 2.47678
21 2BNF UTP 2.48963
22 4NFE BEN 2.53165
23 5JIC ADP 2.5641
24 5JIC N7E 2.5641
25 2QV6 GTP 2.61194
26 2WYV NAD 2.68199
27 2CVQ NDP 2.76923
28 1GEX PLP HSA 2.76923
29 2FZW NAD 2.76923
30 3PP0 03Q 2.76923
31 1SQA UI1 2.85714
32 5JFS 6K0 2.92208
33 3NW7 LGV 2.9316
34 2II3 CAO 3.05344
35 5OBY ANP 3.07692
36 5OBU ANP 3.07692
37 1PVN MZP 3.07692
38 2IVN ANP 3.07692
39 3EEL 53T 3.0837
40 5FFF NAP 3.11284
41 3VGL ANP 3.11526
42 5J60 FAD 3.125
43 2YVF FAD 3.38462
44 2YVF NAD 3.38462
45 3ZNN FAD 3.38462
46 3ZNN 4WL 3.38462
47 1U2Z SAH 3.38462
48 3GUZ PAF 3.40909
49 6B3V 7DQ 3.42105
50 6B3V ANP 3.42105
51 3WW2 SF9 3.51562
52 2YVJ FAD 3.66972
53 4JNE ATP 3.69231
54 4IXH IMP 3.69231
55 2D24 XYS XYS 3.69231
56 5YB7 FAD 3.69231
57 5YB7 ORN 3.69231
58 4J1Q NDP 3.69231
59 3O84 HTJ 3.69231
60 4DE3 DN8 3.80228
61 1TL2 NDG 3.81356
62 4CBU ATP 4
63 3SJH LAR 4
64 2FXU ATP 4
65 5YPU ATP 4
66 4PKI ATP 4
67 4B1W ATP 4
68 4PL8 ATP 4
69 2V51 ATP 4
70 4CBX ATP 4
71 2A42 ATP 4
72 4B1X ATP 4
73 2A40 ATP 4
74 1KXP ATP 4
75 2A3Z ATP 4
76 1SQK ADP 4
77 2C6Q IMP 4
78 2C6Q NDP 4
79 4Z94 ATP 4
80 4Z87 5GP 4
81 4B9Q ATP 4
82 3SJH ATP 4
83 2BLE 5GP 4
84 4BR5 ANP 4
85 4A62 ANP 4.0625
86 2ZGY GDP 4.0625
87 3MN9 ATP 4.30769
88 1YQD NAP 4.30769
89 5WS9 OXL 4.30769
90 3MN6 ATP 4.30769
91 3MN7 ATP 4.30769
92 5Y77 FAD 4.30769
93 5WS9 AMP 4.30769
94 2YYY NAP 4.30769
95 1PQ7 ARG 4.46429
96 4EFH ADP 4.54545
97 4ZGR NGA GAL 4.5977
98 2YCH ATP 4.61538
99 4A2B AGS 4.61538
100 4A2A ATP 4.61538
101 3WQT ANP 4.61538
102 4PL7 ATP 4.61538
103 1RYI GOA 4.61538
104 1RYI FAD 4.61538
105 4A0S NAP 4.61538
106 1RM0 NAI 4.61538
107 1TB4 PEJ 4.61538
108 1NAA 6FA 4.61538
109 4R1S NAP 4.61538
110 2Q97 ATP 4.65116
111 1JUV NDP 4.66321
112 2FF6 ATP 4.66667
113 2FF3 ATP 4.66667
114 4ZCC FAD 4.7619
115 3QV1 NAD 4.87805
116 5EXW 7DT 4.92308
117 4GNI ATP 4.92308
118 5ZI2 NAD 4.92308
119 5FPN KYD 4.92308
120 4HXY NDP 4.92308
121 4C5N ACP 5.07246
122 1FFU CDP 5.22648
123 5EOU ATP 5.23077
124 6EOF ADP 5.23077
125 6ASY ATP 5.23077
126 4DP3 MMV 5.23077
127 4DP3 NDP 5.23077
128 4PKG ATP 5.37634
129 3WB0 FEG 5.42169
130 5M3E APR 5.45455
131 1QM5 PLP 5.53846
132 3IB1 IMN 5.53846
133 1QM5 GLC GLC GLC PO4 SGC GLC 5.53846
134 5ZZA ATP 5.78512
135 2BUP ATP 5.84615
136 2BUP ADP 5.84615
137 5AR0 GB8 5.84615
138 6G3R ADP 5.84615
139 5YEE ATP 5.88235
140 4MSG 2C6 5.99078
141 1PNO NAP 6.11111
142 5Z2L NDP 6.12245
143 4YCA NDP 6.12245
144 2VVL FAD 6.15385
145 2E5A LAQ 6.15385
146 2VVM FAD 6.15385
147 5VN0 FAD 6.15385
148 4YAG NAI 6.22837
149 3NC9 TR3 6.38978
150 3U4L ATP 6.42857
151 2V7Y ADP 6.46154
152 1D1G NDP 6.54762
153 1PFK ADP 6.5625
154 3VET CP 6.76923
155 3VET ADP 6.76923
156 3VET TOY 6.76923
157 6EL3 NAP 6.76923
158 2E2P ADP 7.02341
159 3AY6 NAI 7.0632
160 5LY3 ADP 7.07692
161 4H03 ATP 7.07692
162 4H03 LAR 7.07692
163 5FPE 3TR 7.07692
164 3QFU ADP 7.38462
165 5FJN BE2 7.38462
166 5FJN FAD 7.38462
167 1PS9 FAD 7.38462
168 2CDU FAD 7.38462
169 5LX9 OLB 7.49186
170 1TVP CBI 7.50853
171 3KIF GDL 7.54717
172 2GAG FAD 7.61905
173 2GAG FOA 7.61905
174 2UYT ADP 7.69231
175 2UYT LRH 7.69231
176 6EK3 OUL 7.69231
177 3GPO APR 7.7381
178 2F5Z FAD 7.8125
179 3MN5 ATP 7.89474
180 3HVJ 705 8.1448
181 4CZG ADP 8.30769
182 4CZG QH3 8.30769
183 4XH4 ANP 8.61539
184 4XH4 PPI 8.61539
185 1SAZ ACP 8.92308
186 6CI9 NAP 9.26641
187 3CIP ATP 9.375
188 2BFR ADP 9.375
189 5ZZB ATP 9.55882
190 1YAG ATP 9.6
191 5LJW ANP 9.84615
192 5GS9 ARG 9.84615
193 4OWK NGA 10.1449
194 3U9Z ADP 10.3448
195 5L2Z 70C 10.3448
196 3FSY SCA 10.4615
197 2EB5 OXL 10.4869
198 5XK9 GST 10.7759
199 2W41 ADP 11.0769
200 1MFA GLA MMA ABE 11.811
201 3WYG GTP 11.8421
202 2D0O ADP 12
203 2FAV APR 12.2222
204 3IID APR 12.3223
205 5ITZ GTP 12.4031
206 1XXR MAN 12.4224
207 3QH2 3NM 12.6697
208 1W6F ISZ 13.3094
209 3IA4 NDP 13.5802
210 5DUS APR 13.6905
211 3LDQ 3P1 14.0351
212 4EHU ANP 14.1304
213 2QWO ADP 14.1304
214 3AD8 FAD 14.1414
215 3AD8 PYC 14.1414
216 4YDU ADP 14.1538
217 6D5J GNP 14.3713
218 2BL9 NDP 14.7059
219 3ORF NAD 15.9363
220 4KM2 ATR 17.3184
221 4KM2 TOP 17.3184
222 4ZLU 4PW 18.4615
223 4ZLU ADP 18.4615
224 2PBD ATP 18.6047
225 4B1V LAB 18.75
226 4B1V ATP 18.75
227 2D1K ATP 18.75
228 2QXL ATP 19.0769
229 4PLT OXM 20
230 4PLT NAI 20
231 1ZC3 GNP 21.1429
232 4MO4 ACP 23.6923
233 2PAV ATP 25
Pocket No.: 2; Query (leader) PDB : 4BGB; Ligand: ADP; Similar sites found with APoc: 78
This union binding pocket(no: 2) in the query (biounit: 4bgb.bio2) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 3LN9 FLC None
2 6F5W KG1 1.23077
3 4WOV 3SM 1.57729
4 3C3N FMN 1.60256
5 1V8B NAD 1.84615
6 3NJ4 AFX 2.15385
7 3NJ4 NAD 2.15385
8 5HSA FAS 2.15385
9 1XUJ BOZ 2.24215
10 1Q9I TEO 2.46154
11 1Q9I FAD 2.46154
12 6CEP OXM 2.46154
13 6CEP NAD 2.46154
14 5NUE NAD 2.46154
15 5NUF NAD 2.46154
16 1F6D UDP 2.46154
17 5EB4 FAD 2.46154
18 4C2W ANP 2.50896
19 5A1T NAI 2.6393
20 5A1T OXM 2.6393
21 4P6G 2FZ 2.65487
22 2RAB FAD 2.76923
23 2OG2 MLI 2.76923
24 1U3U NAD 2.76923
25 1U3U BNF 2.76923
26 3F8D FAD 2.78638
27 3NOJ PYR 2.94118
28 2XMY CDK 3.02013
29 5U7W ADE 3.07692
30 5B3A 0JO 3.07692
31 1D4D FAD 3.07692
32 4P4M D3T 3.07692
33 4COV GLA GAL 3.37079
34 1NF8 BOG 3.38164
35 5M67 NAD 3.38462
36 5M67 3D1 3.38462
37 5EOB 5QQ 3.44828
38 6FLZ MMA 3.47222
39 3AFN NAP 3.48837
40 3LM9 ADP 3.64238
41 3I9U DTU 3.80228
42 3QPB URA 4
43 2ZJ1 ARJ 4
44 2ZJ1 NAD 4
45 4EIL NDP 4
46 5AHM IMP 4
47 4F8L AES 4.13793
48 6H3O FAD 4.30769
49 1F0X FAD 4.30769
50 4EUE NAI 4.30769
51 5H6S HDH 4.30769
52 2CDN ADP 4.47761
53 2AWN ADP 4.61538
54 3CQ5 PMP 4.61538
55 1NAA ABL 4.61538
56 1VDC FAD 4.61538
57 4CP8 MLI 4.92308
58 4GID 0GH 4.92308
59 4OKD GLC GLC GLC 5.23077
60 4AKB GAL 5.26316
61 5BTX CMP 5.47945
62 4XFR CIT 5.62061
63 3BF1 ADP 5.62249
64 1YRO UDP 5.69106
65 1UPR 4IP 5.69106
66 4GV8 DUP 5.91716
67 6F97 FAD 6.46154
68 3D91 REM 6.46154
69 1O6Z NAD 6.46154
70 4D9M 0JO 6.76923
71 1GQ2 NAP 7.38462
72 1B0U ATP 8.01527
73 1HYH NAD 8.09062
74 4URG C2E 8.38323
75 1KNM LAT 9.23077
76 4YJK URA 9.52381
77 4DSG FAD 9.84615
78 4CQM NAP 13.7931
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