Receptor
PDB id Resolution Class Description Source Keywords
4A15 2.2 Å EC: 3.6.4.12 CRYSTAL STRUCTURE OF AN XPD DNA COMPLEX THERMOPLASMA ACIDOPHILUM HYDROLASE HELICASE NUCLEOTIDE EXCISION REPAIR
Ref.: FUNCTIONAL AND STRUCTURAL STUDIES OF THE NUCLEOTIDE EXCISION REPAIR HELICASE XPD SUGGEST A POLARITY FOR TRANSLOCATION. EMBO J. V. 31 494 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:1620;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
DT DA DC DG E:1;
Valid;
none;
submit data
1248.77 n/a [P+](...
SF4 A:1616;
Part of Protein;
none;
submit data
351.64 Fe4 S4 [S]12...
SO4 A:1617;
A:1618;
A:1619;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4A15 2.2 Å EC: 3.6.4.12 CRYSTAL STRUCTURE OF AN XPD DNA COMPLEX THERMOPLASMA ACIDOPHILUM HYDROLASE HELICASE NUCLEOTIDE EXCISION REPAIR
Ref.: FUNCTIONAL AND STRUCTURAL STUDIES OF THE NUCLEOTIDE EXCISION REPAIR HELICASE XPD SUGGEST A POLARITY FOR TRANSLOCATION. EMBO J. V. 31 494 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4A15 - DT DA DC DG n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4A15 - DT DA DC DG n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4A15 - DT DA DC DG n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DT DA DC DG; Similar ligands found: 41
No: Ligand ECFP6 Tc MDL keys Tc
1 DT DA DC DG 1 1
2 DC DG DT DA 0.978873 1
3 DG DA DC DG 0.823129 0.952941
4 DA DC DG DA 0.817568 0.952941
5 DC DG DA DC 0.789116 0.952381
6 DA DT DA DA 0.714286 0.917647
7 DC DG 0.650685 0.941176
8 DG DT DC 0.619355 0.965116
9 DG DC 0.602564 0.929412
10 DC DC DT DG 0.58042 0.833333
11 DU DU DU DU BRU DG DU 0.573171 0.910112
12 DU DU DU DU BRU DA DU 0.563636 0.853933
13 CGP 0.548387 0.918605
14 DT MA7 DT 0.532934 0.918605
15 DG DG 0.517007 0.917647
16 CPA 0.512821 0.883721
17 3PD UM3 0.503145 0.917647
18 PAX 0.494048 0.929412
19 DT DC 0.465409 0.825581
20 ADS THS THS THS 0.461078 0.865169
21 DA DU DG DA 0.460123 0.906977
22 DT DT PST 0.454545 0.784091
23 DT ME6 DT 0.447853 0.837209
24 U A G G 0.446429 0.870588
25 A G U 0.441989 0.895349
26 4TA 0.440476 0.929412
27 G G G RPC 0.434524 0.904762
28 G C 0.434524 0.883721
29 A G C C 0.433526 0.894118
30 U G A 0.431694 0.895349
31 DT DT DT DT DT 0.425806 0.813953
32 G A A A 0.423529 0.860465
33 DGP 0.42069 0.870588
34 DG 0.42069 0.870588
35 APC G U 0.416185 0.870588
36 G G G C 0.411429 0.895349
37 Z5A 0.410112 0.897727
38 DT DT DT 0.409396 0.77907
39 U A C C 0.408046 0.870588
40 DGI 0.403974 0.860465
41 G C C C 0.4 0.883721
Similar Binding Sites (Proteins are less than 50% similar to leader)
Feedback