Receptor
PDB id Resolution Class Description Source Keywords
2Q6O 2 Å EC: 7.-.-.- SALL-Y70T WITH SAM AND CL SALINISPORA TROPICA CHLORINASE Y70T MUTANT SAM AND CL COMPLEX BIOSYNTHETIC PRO
Ref.: DISCOVERY AND CHARACTERIZATION OF A MARINE BACTERIA SAM-DEPENDENT CHLORINASE NAT.CHEM.BIOL. V. 4 69 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL A:284;
B:284;
Invalid;
Invalid;
none;
none;
submit data
35.453 Cl [Cl-]
SAM A:500;
B:500;
Valid;
Valid;
none;
none;
submit data
398.437 C15 H22 N6 O5 S C[S@@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2Q6K 1.55 Å EC: 7.-.-.- SALL WITH ADENOSINE SALINISPORA TROPICA CHLORINASE COMPLEX WITH ADENOSINE BIOSYNTHETIC PROTEIN
Ref.: DISCOVERY AND CHARACTERIZATION OF A MARINE BACTERIA SAM-DEPENDENT CHLORINASE NAT.CHEM.BIOL. V. 4 69 2008
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 250 families.
1 2Q6K - ADN C10 H13 N5 O4 c1nc(c2c(n....
2 2Q6O - SAM C15 H22 N6 O5 S C[S@@+](CC....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 217 families.
1 2Q6K - ADN C10 H13 N5 O4 c1nc(c2c(n....
2 2Q6O - SAM C15 H22 N6 O5 S C[S@@+](CC....
50% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 2Q6K - ADN C10 H13 N5 O4 c1nc(c2c(n....
2 2Q6O - SAM C15 H22 N6 O5 S C[S@@+](CC....
3 2V7T Ka = 30200000 M^-1 SAH C14 H20 N6 O5 S c1nc(c2c(n....
4 2CC2 - 5AD C10 H13 N5 O3 C[C@@H]1[C....
5 2CBX - CC5 C9 H11 N5 O3 c1nc(c2c(n....
6 2V7V Ka = 4550000 M^-1 5FD C10 H14 F N5 O3 [H]/N=C/1C....
7 2V7W - 5FD C10 H14 F N5 O3 [H]/N=C/1C....
8 2V7X Ka = 59000 M^-1 MET C5 H11 N O2 S CSCC[C@@H]....
9 5FIU Ka = 2710000 M^-1 Y3J C10 H11 F2 N5 O3 c1nc(c2c(n....
10 2V7U Ka = 800000 M^-1 SAM C15 H22 N6 O5 S C[S@@+](CC....
11 1RQP - SAM C15 H22 N6 O5 S C[S@@+](CC....
12 2C2W - 5CD C10 H12 Cl N5 O3 c1nc(c2c(n....
13 2C5B - MET C5 H11 N O2 S CSCC[C@@H]....
14 5B6I - MET C5 H11 N O2 S CSCC[C@@H]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SAM; Similar ligands found: 192
No: Ligand ECFP6 Tc MDL keys Tc
1 SAM 1 1
2 SMM 0.792683 0.96
3 S4M 0.6875 0.909091
4 S7M 0.670455 0.945946
5 M2T 0.636364 0.878378
6 GEK 0.612903 0.931507
7 SAI 0.571429 0.878378
8 XYA 0.565789 0.773333
9 ADN 0.565789 0.773333
10 RAB 0.565789 0.773333
11 5CD 0.564103 0.783784
12 EP4 0.5625 0.826667
13 SA8 0.56044 0.945205
14 SFG 0.555556 0.875
15 5X8 0.555556 0.888889
16 5N5 0.551282 0.773333
17 A4D 0.544304 0.797297
18 EEM 0.542553 0.945946
19 SAH 0.537634 0.916667
20 DTA 0.536585 0.789474
21 62X 0.535354 0.884615
22 MTA 0.53012 0.875
23 3DH 0.517647 0.849315
24 AMP MG 0.511364 0.710843
25 5AL 0.510417 0.743902
26 VMS 0.510204 0.673913
27 54H 0.510204 0.673913
28 0UM 0.51 0.857143
29 A 0.505747 0.707317
30 AMP 0.505747 0.707317
31 ABM 0.505618 0.753086
32 A5A 0.505155 0.688889
33 DAL AMP 0.50505 0.765432
34 NVA LMS 0.504951 0.725275
35 K15 0.5 0.883117
36 6RE 0.5 0.78481
37 5AD 0.5 0.75
38 SSA 0.5 0.684783
39 SON 0.5 0.746988
40 SRP 0.5 0.746988
41 LSS 0.49505 0.706522
42 CA0 0.494624 0.714286
43 A12 0.494505 0.705882
44 AP2 0.494505 0.705882
45 ME8 0.490385 0.841463
46 5CA 0.49 0.684783
47 TSB 0.49 0.681319
48 53H 0.49 0.666667
49 ACP 0.489362 0.694118
50 5AS 0.48913 0.648936
51 ADP 0.48913 0.690476
52 A2D 0.488889 0.690476
53 J7C 0.488889 0.772152
54 ZAS 0.488636 0.769231
55 8QN 0.485149 0.743902
56 GAP 0.484536 0.73494
57 AN2 0.483871 0.682353
58 A3S 0.483871 0.813333
59 A7D 0.483871 0.851351
60 GJV 0.483516 0.775
61 SRA 0.483146 0.694118
62 LAD 0.480769 0.752941
63 KAA 0.480769 0.698925
64 GSU 0.480769 0.722222
65 AMO 0.480392 0.746988
66 DSZ 0.480392 0.703297
67 52H 0.48 0.666667
68 ADP MG 0.478723 0.702381
69 M33 0.478723 0.722892
70 MAO 0.478261 0.82716
71 BA3 0.478261 0.690476
72 AOC 0.477778 0.776316
73 DSH 0.477778 0.842105
74 NEC 0.477778 0.75
75 SXZ 0.47619 0.894737
76 AHX 0.475728 0.701149
77 Y3J 0.47561 0.706667
78 G5A 0.474227 0.684783
79 A3T 0.473684 0.8
80 ADP BEF 0.473684 0.686047
81 BEF ADP 0.473684 0.686047
82 B4P 0.473118 0.690476
83 AP5 0.473118 0.690476
84 A3N 0.472527 0.766234
85 KB1 0.471698 0.833333
86 LEU LMS 0.471154 0.706522
87 APC 0.46875 0.705882
88 PRX 0.46875 0.73494
89 PAJ 0.466019 0.712644
90 4AD 0.466019 0.759036
91 RBY 0.463918 0.72619
92 ADP PO3 0.463918 0.728395
93 ADV 0.463918 0.72619
94 ADX 0.463158 0.666667
95 MHZ 0.463158 0.82716
96 AU1 0.463158 0.674419
97 YAP 0.462963 0.738095
98 TXA 0.462264 0.72619
99 NB8 0.462264 0.72093
100 A3G 0.461538 0.802632
101 VRT 0.459184 0.842105
102 ATP MG 0.459184 0.702381
103 YSA 0.458716 0.684783
104 XAH 0.458716 0.715909
105 50T 0.458333 0.682353
106 ATP 0.458333 0.690476
107 7D7 0.45679 0.723684
108 ANP MG 0.455446 0.678161
109 KH3 0.455357 0.871795
110 ACQ 0.454545 0.694118
111 AQP 0.453608 0.690476
112 5FA 0.453608 0.690476
113 AR6 0.453608 0.710843
114 APR 0.453608 0.710843
115 NSS 0.451923 0.703297
116 FA5 0.449541 0.746988
117 AGS 0.44898 0.678161
118 SAP 0.44898 0.678161
119 A5D 0.44898 0.789474
120 AD9 0.44898 0.674419
121 PTJ 0.448598 0.72093
122 YLB 0.448276 0.758621
123 YLP 0.447368 0.738636
124 D3Y 0.446602 0.792208
125 ADP ALF 0.445545 0.678161
126 ALF ADP 0.445545 0.678161
127 TYR AMP 0.445455 0.746988
128 MYR AMP 0.444444 0.776471
129 3AM 0.444444 0.674699
130 OAD 0.443396 0.73494
131 2VA 0.443299 0.779221
132 OOB 0.442308 0.722892
133 S8M 0.442308 0.831169
134 ADP VO4 0.441176 0.702381
135 VO4 ADP 0.441176 0.702381
136 ANP 0.44 0.674419
137 TAT 0.44 0.686047
138 WAQ 0.439252 0.75
139 ARG AMP 0.438596 0.727273
140 YLC 0.435897 0.755814
141 AAT 0.435644 0.797468
142 3OD 0.435185 0.73494
143 1ZZ 0.435185 0.755814
144 NVA 2AD 0.434343 0.815789
145 DLL 0.433962 0.722892
146 00A 0.433962 0.689655
147 7MD 0.433628 0.715909
148 ATF 0.431373 0.666667
149 SO8 0.43 0.792208
150 3UK 0.429907 0.714286
151 A6D 0.429907 0.72619
152 5SV 0.428571 0.741176
153 AMP DBH 0.428571 0.714286
154 WSA 0.42735 0.692308
155 TYM 0.42735 0.746988
156 9SN 0.427273 0.681818
157 AHZ 0.426087 0.755814
158 A A 0.425926 0.710843
159 3NZ 0.425926 0.807692
160 P5A 0.425926 0.691489
161 PR8 0.425926 0.744186
162 A1R 0.424528 0.709302
163 2A5 0.424242 0.674419
164 7MC 0.423729 0.719101
165 7D5 0.422222 0.658824
166 FYA 0.422018 0.722892
167 JB6 0.422018 0.709302
168 AYB 0.421488 0.75
169 PLP AAD 0.419355 0.764045
170 A22 0.419048 0.682353
171 MAP 0.419048 0.659091
172 2AM 0.417582 0.666667
173 TAD 0.417391 0.712644
174 A3P 0.416667 0.686747
175 ADP BMA 0.416667 0.714286
176 25A 0.415094 0.690476
177 YLA 0.413223 0.719101
178 ADQ 0.411215 0.694118
179 48N 0.410256 0.72093
180 0XU 0.41 0.824324
181 NAD IBO 0.406504 0.717647
182 7D3 0.40625 0.643678
183 PAP 0.405941 0.678571
184 OVE 0.404255 0.662791
185 4UV 0.403509 0.697674
186 ALF ADP 3PG 0.403361 0.712644
187 AF3 ADP 3PG 0.403361 0.712644
188 LA8 ALF 3PG 0.403361 0.712644
189 3AD 0.402299 0.783784
190 CMP 0.402062 0.691358
191 2BA 0.402062 0.682927
192 7C5 0.4 0.731707
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2Q6K; Ligand: ADN; Similar sites found: 50
This union binding pocket(no: 1) in the query (biounit: 2q6k.bio1) has 23 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3KPE TM3 0.001748 0.46689 None
2 3C2O NTM 0.002688 0.41277 1.41343
3 2ZO9 MLI 0.0007013 0.45696 2.12014
4 2Q37 3AL 0.007602 0.43112 2.4735
5 3L8W XAN 0.001536 0.40272 2.4735
6 2XBP ATP 0.000362 0.41244 2.65487
7 1XX4 BAM 0.003791 0.44208 2.68199
8 3UEC ALA ARG TPO LYS 0.02059 0.42152 2.73973
9 2Q8H TF4 0.00735 0.45762 2.82686
10 1RZM E4P 0.02006 0.42208 2.82686
11 1BTN I3P 0.001563 0.5159 2.83019
12 1O9U ADZ 0.001482 0.49436 3.18021
13 3LTW HLZ 0.0228 0.41406 3.21429
14 1ULE GLA GAL NAG 0.01678 0.43194 3.33333
15 3SHR CMP 0.009975 0.41166 3.34448
16 1F1V DHY 0.01932 0.40364 3.53357
17 1A5Z FBP 0.002763 0.40994 3.88693
18 1G8S MET 0.007518 0.43695 3.91304
19 2XD9 XD9 0.007087 0.41293 4.19162
20 2NCD ADP 0.02392 0.40824 4.24028
21 3F81 STT 0.008338 0.45472 4.37158
22 2JBH 5GP 0.00863 0.41874 4.44444
23 3QV9 QV7 0.003806 0.44487 4.59364
24 1T0S BML 0.02686 0.42146 4.59364
25 3A1I UNU 0.0127 0.40727 4.59364
26 3NOJ PYR 0.0001634 0.50344 5.04202
27 4RJK PYR 0.006744 0.47743 5.30035
28 2F2U M77 0.01784 0.40108 6.00707
29 4F8L GAL 0.02436 0.44507 6.2069
30 1J2Z SOG 0.007171 0.40372 6.66667
31 4E28 9MZ 0.04393 0.4004 6.71378
32 3S9K CIT 0.005389 0.49231 6.77966
33 2Y7P SAL 0.02214 0.40527 6.88073
34 4KCT FDP 0.00614 0.41612 7.06714
35 1TV5 N8E 0.001444 0.42384 7.42049
36 2Y7G AAE 0.004352 0.41388 7.42049
37 1TV5 ORO 0.008919 0.40012 7.42049
38 1LO8 4CA 0.002159 0.40132 7.80142
39 1TUV VK3 0.01648 0.43902 7.89474
40 2E1A MSE 0.004899 0.42931 8
41 2EB5 OXL 0.01429 0.42372 8.2397
42 3BY8 MLT 0.011 0.43493 8.4507
43 1QO0 BMD 0.004649 0.44682 8.48057
44 4COQ SAN 0.005438 0.44361 8.50202
45 3QDT A2G GAL 0.01245 0.43855 10.4895
46 1Z44 NPO 0.01494 0.45744 10.6007
47 1A8S PPI 0.0005753 0.46049 10.6227
48 2V5E SCR 0.04346 0.42299 10.8911
49 3RF4 FUN 0.01126 0.41836 15.5172
50 2WR8 SAH 0.00002421 0.50232 45.5598
Pocket No.: 2; Query (leader) PDB : 2Q6K; Ligand: ADN; Similar sites found: 38
This union binding pocket(no: 2) in the query (biounit: 2q6k.bio2) has 23 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1UO5 PIH 0.03826 0.45843 None
2 2QCX PF1 0.03487 0.42564 None
3 4RLE 2BA 0.003141 0.40577 None
4 1YBQ BDH 0.001935 0.40533 1.76678
5 1QDS PGA 0.03985 0.4111 1.99203
6 1V8K ANP 0.001787 0.41604 2.12014
7 4Q3S X7A 0.007922 0.41098 2.12014
8 1WKL ATP 0.000128 0.40431 2.18978
9 1WKL ADP 0.0008633 0.40222 2.18978
10 4LWM MHO 0.02392 0.44801 2.30415
11 4FUA PGH 0.0006915 0.44136 2.32558
12 5DS8 GLY 5CT GLY ALA 0.01143 0.46738 2.7027
13 5A2J ALA PRO ASP THR ARG PRO 0.01288 0.4679 2.82686
14 4M5P MLA 0.02439 0.46264 2.82686
15 2BMK PDD 0.009457 0.46239 3.28639
16 2ET1 GLV 0.000003947 0.47516 3.48259
17 1FNZ A2G 0.00007627 0.49141 3.79747
18 1A5Z OXM 0.001472 0.51619 3.88693
19 3VGL BGC 0.00007919 0.46662 3.88693
20 2Z5Y HRM 0.001862 0.42075 3.88693
21 3VGL ANP 0.002048 0.40022 3.88693
22 2WL9 MBD 0.01334 0.40138 4.59364
23 3NGU ADP 0.02075 0.41698 4.63576
24 5D6C 57S 0.006887 0.49098 4.91071
25 1BGV GLU 0.0000002337 0.50998 5.30035
26 2WLT ASP 0.0005119 0.43951 5.30035
27 4PNO U5P 0.000001126 0.602 5.55556
28 4IEN GDP 0.007633 0.4038 6.36042
29 2YP9 SIA CMO 0.01676 0.41597 7.42049
30 1TV5 A26 0.009407 0.41237 7.42049
31 2XDQ MGX 0.005157 0.49409 7.77385
32 1CFV E3G 0.001246 0.43556 7.9646
33 5T63 ALA ALA ALA ALA 0.0000679 0.49332 9.54064
34 3PHQ KDO 0.00146 0.55847 10.1382
35 1SQ5 ADP 0.04975 0.40333 10.9541
36 1UGX GAL MGC 0.0002773 0.44842 11.2782
37 1JQN DCO 0.0001509 0.44438 11.6608
38 1RSD PSB 0.000005548 0.43742 18.1818
Feedback