Receptor
PDB id Resolution Class Description Source Keywords
2CNC 2.4 Å EC: 3.2.1.8 FAMILY 10 XYLANASE CELLVIBRIO MIXTUS DECORATED SUGAR XYLAN DEGRADATION XYLANASE HYDROLASE GLYTHERMOSTABILITY
Ref.: PROBING THE STRUCTURAL BASIS FOR THE DIFFERENCE IN THERMOSTABILITY DISPLAYED BY FAMILY 10 XYLANASES. J.MOL.BIOL. V. 360 157 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL A:1384;
A:1385;
 Invalid;
Invalid;
 none;
none;
 submit data
35.453 Cl [Cl-]
MG A:1389;
 Invalid;
 none;
 submit data
24.305 Mg [Mg+2...
XYS XYP AHR B:1;
 Valid;
 none;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UR1 1.43 Å EC: 3.2.1.8 XYLANASE XYN10B MUTANT (E262S) FROM CELLVIBRIO MIXTUS IN COM ARABINOFURANOSE ALPHA-1,3 LINKED TO XYLOBIOSE CELLVIBRIO MIXTUS HYDROLASE FAMILY 10 XYLANASE GLYCOSIDE HYDROLASE HEMICELXYLAN DEGRADATION
Ref.: THE MECHANISMS BY WHICH FAMILY 10 GLYCOSIDE HYDROLA DECORATED SUBSTRATES J.BIOL.CHEM. V. 279 9597 2004
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 34 families.
1 1UR2 - XYP XYP XYP n/a n/a
2 2CNC - XYS XYP AHR n/a n/a
3 1UQY - XYP XYP XYP XYP n/a n/a
4 1UR1 - XYS XYP AHR n/a n/a
5 1UQZ - XYP XYP XYP GCV n/a n/a
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 32 families.
1 1UR2 - XYP XYP XYP n/a n/a
2 2CNC - XYS XYP AHR n/a n/a
3 1UQY - XYP XYP XYP XYP n/a n/a
4 1UR1 - XYS XYP AHR n/a n/a
5 1UQZ - XYP XYP XYP GCV n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 19 families.
1 1UR2 - XYP XYP XYP n/a n/a
2 2CNC - XYS XYP AHR n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: XYS XYP AHR; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: XYS XYP AHR; Similar ligands found: 4
No: Ligand Similarity coefficient
1 XYS XYP AHR 1.0000
2 XYP XYP AHR 0.9503
3 XYP XYP XYP 0.9027
4 XYS XYP XYP 0.9002
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1UR1; Ligand: XYS XYP AHR; Similar sites found with APoc: 1
This union binding pocket(no: 1) in the query (biounit: 1ur1.bio1) has 27 residues
No: Leader PDB Ligand Sequence Similarity
1 4PMZ XYP XYP 38.9439
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