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Receptor
PDB id Resolution Class Description Source Keywords
1QO0 2.25 Å NON-ENZYME: TRANSCRIPT_TRANSLATE AMIDE RECEPTOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH THE POSITIVE REGULATOR A MIR. PSEUDOMONAS AERUGINOSA BINDING PROTEIN GENE REGULATOR RECEPTOR
Ref.: CRYSTAL STRUCTURE AND INDUCTION MECHANISM OF AMIC-AMIR: A LIGAND-REGULATED TRANSCRIPTION ANTITERMINATION COMPLEX EMBO J. V. 18 5175 1999
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BMD A:400;
B:500;
Valid;
Valid;
none;
none;
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87.12 C4 H9 N O CCCC(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1QO0 2.25 Å NON-ENZYME: TRANSCRIPT_TRANSLATE AMIDE RECEPTOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH THE POSITIVE REGULATOR A MIR. PSEUDOMONAS AERUGINOSA BINDING PROTEIN GENE REGULATOR RECEPTOR
Ref.: CRYSTAL STRUCTURE AND INDUCTION MECHANISM OF AMIC-AMIR: A LIGAND-REGULATED TRANSCRIPTION ANTITERMINATION COMPLEX EMBO J. V. 18 5175 1999
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1QO0 - BMD C4 H9 N O CCCC(=O)N
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 1QO0 - BMD C4 H9 N O CCCC(=O)N
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1QO0 - BMD C4 H9 N O CCCC(=O)N
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BMD; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 BMD 1 1
2 ROP 0.533333 0.842105
3 HPN 0.478261 0.76
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: 41
This union binding pocket(no: 1) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 4UUG PXG 2.71084
2 1GJC 130 3.06122
3 4K26 NDP 3.26087
4 2WBV SIA 3.7037
5 1NP7 FAD 3.8961
6 2E4U GLU 4.08163
7 3I8P 840 4.15584
8 3O0Q TTP 4.15584
9 3RFA SAM 4.59184
10 2B3D FAD 4.90196
11 1B8O IMH 5.10204
12 3H8V ATP 5.10204
13 2A0W DIH 5.10204
14 1IWE IMP 5.19481
15 5K8P 6R8 5.45455
16 1IYE PGU 5.61225
17 1J1R ADE 5.61225
18 5YVR NDP 5.97403
19 1K27 MTM 6.12245
20 1KY8 NAP 6.63265
21 6B5G CQY 7.01299
22 6B5G NAD 7.01299
23 2WET FAD 7.14286
24 2VH6 GSV 7.14286
25 4BTI 7R9 7.14286
26 3X1Z GNP 7.18563
27 2QQ0 ANP 7.6087
28 2QQ0 TMP 7.6087
29 2QQ0 ADP 7.6087
30 5L13 6ZE 7.65306
31 3BW2 FMN 8.67209
32 4JWF SAH 8.75576
33 3DJF BC3 9.18367
34 3IP6 PRO 9.55056
35 1VLJ NAP 12.2449
36 2JFN GLU 12.2449
37 4V1T ADP 14.0625
38 5X2N ALA 18.3673
39 5FA8 SAM 29.1925
40 4EVQ PHB 33.6
41 1OJ7 NZQ 35.2041
Pocket No.: 2; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: 8
This union binding pocket(no: 3) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 4K26 SFF 3.26087
2 1NFU RRP 7.14286
3 3ND6 ATP 8.18713
4 6CI7 ACP 9.69388
5 1QPB TPP 10.7143
6 1OSS BEN 11.7347
7 2ANK N12 18.9189
8 3NEM AMO 21.9388
Pocket No.: 4; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
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