Receptor
PDB id Resolution Class Description Source Keywords
1QO0 2.25 Å NON-ENZYME: TRANSCRIPT_TRANSLATE AMIDE RECEPTOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH THE POSITIVE REGULATOR A MIR. PSEUDOMONAS AERUGINOSA BINDING PROTEIN GENE REGULATOR RECEPTOR
Ref.: CRYSTAL STRUCTURE AND INDUCTION MECHANISM OF AMIC-AMIR: A LIGAND-REGULATED TRANSCRIPTION ANTITERMINATION COMPLEX EMBO J. V. 18 5175 1999
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BMD A:400;
B:500;
Valid;
Valid;
none;
none;
submit data
87.12 C4 H9 N O CCCC(...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1QO0 2.25 Å NON-ENZYME: TRANSCRIPT_TRANSLATE AMIDE RECEPTOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH THE POSITIVE REGULATOR A MIR. PSEUDOMONAS AERUGINOSA BINDING PROTEIN GENE REGULATOR RECEPTOR
Ref.: CRYSTAL STRUCTURE AND INDUCTION MECHANISM OF AMIC-AMIR: A LIGAND-REGULATED TRANSCRIPTION ANTITERMINATION COMPLEX EMBO J. V. 18 5175 1999
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1QO0 - BMD C4 H9 N O CCCC(=O)N
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 1QO0 - BMD C4 H9 N O CCCC(=O)N
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1QO0 - BMD C4 H9 N O CCCC(=O)N
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BMD; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 BMD 1 1
2 ROP 0.533333 0.842105
3 HPN 0.478261 0.76
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1QO0; Ligand: BMD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1qo0.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
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