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Receptor
PDB id Resolution Class Description Source Keywords
1GOY 2 Å EC: 3.1.27.3 HYDROLASE(ENDORIBONUCLEASE)RIBONUCLEASE BI(G SPECIFIC ENDONU (E.C.3.1.27.-) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GM BACILLUS INTERMEDIUS HYDROLASE ENDORIBONUCLEASE NUCLEASE
Ref.: THE STRUCTURE OF SUBSTRATE-FREE MICROBIAL RIBONUCLE BINASE AND OF ITS COMPLEXES WITH 3'GMP AND SULFATE ACTA CRYSTALLOGR.,SECT.D V. 58 744 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
3GP A:110;
Valid;
none;
submit data
363.221 C10 H14 N5 O8 P c1nc2...
SO4 W:110;
W:111;
W:99;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1GOY 2 Å EC: 3.1.27.3 HYDROLASE(ENDORIBONUCLEASE)RIBONUCLEASE BI(G SPECIFIC ENDONU (E.C.3.1.27.-) COMPLEXED WITH GUANOSINE-3'-PHOSPHATE (3'-GM BACILLUS INTERMEDIUS HYDROLASE ENDORIBONUCLEASE NUCLEASE
Ref.: THE STRUCTURE OF SUBSTRATE-FREE MICROBIAL RIBONUCLE BINASE AND OF ITS COMPLEXES WITH 3'GMP AND SULFATE ACTA CRYSTALLOGR.,SECT.D V. 58 744 2002
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1GOY - 3GP C10 H14 N5 O8 P c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1BRN - DC DG DA DC n/a n/a
2 1RNB - DG DC n/a n/a
3 1GOY - 3GP C10 H14 N5 O8 P c1nc2c(n1[....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1BRN - DC DG DA DC n/a n/a
2 1RNB - DG DC n/a n/a
3 1GOY - 3GP C10 H14 N5 O8 P c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 3GP; Similar ligands found: 102
No: Ligand ECFP6 Tc MDL keys Tc
1 3GP 1 1
2 G3D 0.753086 0.959459
3 2GP 0.733333 0.959459
4 GMP 0.704225 0.853333
5 G4P 0.674419 0.959459
6 G 0.65 0.959459
7 5GP 0.65 0.959459
8 0O2 0.644444 0.959459
9 GDP 0.611765 0.946667
10 GNH 0.604651 0.934211
11 GCP G 0.602151 0.945946
12 GP3 0.6 0.922078
13 GSP 0.595506 0.898734
14 GP2 0.593023 0.910256
15 GPG 0.591398 0.935065
16 GTP 0.590909 0.946667
17 G2P 0.577778 0.910256
18 G G 0.57732 0.922078
19 G U34 0.576923 0.8875
20 G U 0.576923 0.898734
21 GMV 0.573034 0.922078
22 ALF 5GP 0.573034 0.864198
23 P2G 0.571429 0.932432
24 GDC 0.56701 0.935065
25 GDD 0.56701 0.935065
26 GKE 0.56701 0.935065
27 G1R 0.566667 0.934211
28 GCP 0.566667 0.922078
29 G C 0.566038 0.898734
30 GAV 0.565217 0.910256
31 G A A A 0.560748 0.922078
32 GNP 0.56044 0.922078
33 9GM 0.56044 0.922078
34 P1G 0.55814 0.92
35 ALF GDP 0.536842 0.864198
36 GDP AF3 0.536842 0.864198
37 GDP ALF 0.536842 0.864198
38 G2R 0.53125 0.910256
39 A G 0.518182 0.909091
40 SGP 0.517241 0.871795
41 GDR 0.514852 0.910256
42 GFB 0.514852 0.910256
43 GKD 0.514563 0.935065
44 U A G G 0.513514 0.909091
45 YGP 0.51 0.876543
46 6CK 0.509804 0.8875
47 G3A 0.509804 0.922078
48 U2G 0.509259 0.911392
49 BGO 0.509259 0.898734
50 G G G RPC 0.509091 0.897436
51 DG 0.505747 0.909091
52 DGP 0.505747 0.909091
53 GH3 0.505263 0.946667
54 Y9Z 0.504951 0.878049
55 G5P 0.504854 0.922078
56 APC G U 0.504425 0.909091
57 GTG 0.5 0.8875
58 CG2 0.5 0.911392
59 3AM 0.5 0.90411
60 JB2 0.5 0.910256
61 GDX 0.495238 0.922078
62 GPD 0.495238 0.876543
63 GPX 0.494845 0.92
64 GDP 7MG 0.490385 0.886076
65 DGI 0.48913 0.897436
66 JB3 0.486239 0.898734
67 G G G C 0.482759 0.8875
68 GGM 0.482143 0.876543
69 A G C C 0.478632 0.886076
70 35G 0.478261 0.932432
71 C2E 0.478261 0.92
72 PCG 0.478261 0.932432
73 A G U 0.47619 0.8875
74 5GP 5GP 0.473118 0.906667
75 2MD 0.469027 0.845238
76 DGT 0.46875 0.897436
77 NGD 0.468468 0.910256
78 FEG 0.468468 0.855422
79 DG DG 0.465347 0.8875
80 ZGP 0.464286 0.845238
81 G C C C 0.46281 0.898734
82 A G U U 0.458015 0.8875
83 MGD 0.456897 0.845238
84 GPC 0.456897 0.878049
85 AKW 0.455357 0.843373
86 CAG 0.444444 0.835294
87 PGD O 0.442623 0.806818
88 DBG 0.434426 0.898734
89 G1R G1R 0.434426 0.875
90 TPG 0.434426 0.797753
91 UCG 0.430894 0.910256
92 MD1 0.429752 0.845238
93 PGD 0.429752 0.876543
94 G1G 0.425 0.876543
95 FE9 0.421488 0.755319
96 4BW 0.416667 0.92
97 1YD 0.416667 0.92
98 3ZE 0.410526 0.858974
99 CGP 0.410256 0.888889
100 DC DG 0.40678 0.865854
101 A3P 0.402174 0.891892
102 G4M 0.401515 0.857143
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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