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Receptor
PDB id Resolution Class Description Source Keywords
1EZV 2.3 Å EC: 1.10.2.2 STRUCTURE OF THE YEAST CYTOCHROME BC1 COMPLEX CO- CRYSTALLIZED WITH AN ANTIBODY FV-FRAGMENT SACCHAROMYCES CEREVISIAE CYTOCHROME BC1 COMPLEX COMPLEX III QCR MITOCHONDRIA YEAST ANTIBODY FV-FRAGMENT STIGMATELLIN COENZYME Q6 MATRIX PROCESSING PEPTIDASES UBIQUINONE ELECTRON TRANSFERPROTON TRANSFER Q-CYCLE OXIDOREDUCTASE/ELECTRON TRANSPORTCOMPLEX
Ref.: STRUCTURE AT 2.3 A RESOLUTION OF THE CYTOCHROME BC(1) COMPLEX FROM THE YEAST SACCHAROMYCES CEREVISIAE CO-CRYSTALLIZED WITH AN ANTIBODY FV FRAGMENT. STRUCTURE FOLD.DES. V. 8 669 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FES E:4;
Part of Protein;
none;
submit data
175.82 Fe2 S2 S1[Fe...
HEM C:401;
C:402;
D:3;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
616.487 C34 H32 Fe N4 O4 Cc1c2...
SMA C:505;
Valid;
none;
submit data
514.65 C30 H42 O7 C/C=C...
UQ6 C:506;
Valid;
none;
submit data
592.891 C39 H60 O4 Cc1c(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1EZV 2.3 Å EC: 1.10.2.2 STRUCTURE OF THE YEAST CYTOCHROME BC1 COMPLEX CO- CRYSTALLIZED WITH AN ANTIBODY FV-FRAGMENT SACCHAROMYCES CEREVISIAE CYTOCHROME BC1 COMPLEX COMPLEX III QCR MITOCHONDRIA YEAST ANTIBODY FV-FRAGMENT STIGMATELLIN COENZYME Q6 MATRIX PROCESSING PEPTIDASES UBIQUINONE ELECTRON TRANSFERPROTON TRANSFER Q-CYCLE OXIDOREDUCTASE/ELECTRON TRANSPORTCOMPLEX
Ref.: STRUCTURE AT 2.3 A RESOLUTION OF THE CYTOCHROME BC(1) COMPLEX FROM THE YEAST SACCHAROMYCES CEREVISIAE CO-CRYSTALLIZED WITH AN ANTIBODY FV FRAGMENT. STRUCTURE FOLD.DES. V. 8 669 2000
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 1EZV - SMA C30 H42 O7 C/C=C(C)/C....
2 1P84 - DBT C14 H17 N O3 S CCCCCCCC1=....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 2IBZ - SMA C30 H42 O7 C/C=C(C)/C....
2 1EZV - SMA C30 H42 O7 C/C=C(C)/C....
3 1P84 - DBT C14 H17 N O3 S CCCCCCCC1=....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 2IBZ - SMA C30 H42 O7 C/C=C(C)/C....
2 1EZV - SMA C30 H42 O7 C/C=C(C)/C....
3 1P84 - DBT C14 H17 N O3 S CCCCCCCC1=....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SMA; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 SMA 1 1
Ligand no: 2; Ligand: UQ6; Similar ligands found: 10
No: Ligand ECFP6 Tc MDL keys Tc
1 UQ6 1 1
2 9BR 0.464789 0.733333
3 UQ8 0.449275 0.780488
4 U10 0.449275 0.780488
5 UQ7 0.449275 0.780488
6 UQ 0.449275 0.780488
7 UQ5 0.449275 0.756098
8 UQ9 0.449275 0.780488
9 8PP 0.409091 0.769231
10 RNB 0.408451 0.711111
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1EZV; Ligand: SMA; Similar sites found with APoc: 140
This union binding pocket(no: 1) in the query (biounit: 1ezv.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 5ET3 60C None
3 3SQP 3J8 6.45161
4 3SHZ 5CO 8.10811
5 1SZO CAX 8.94942
6 4DR9 BB2 9.45946
7 5MTE BB2 9.48905
8 1R6N 434 10.2703
9 5U83 ZN8 10.2804
10 5AZC PGT 10.4
11 5OC1 ANN 10.4
12 4RYV ZEA 10.7527
13 3HYW DCQ 10.8108
14 3GXO SAH 10.8108
15 5IM3 DTP 10.9091
16 6BE0 IHP 11.0236
17 3CEV ARG 11.0236
18 3ROE THM 11.215
19 1QCI ADE 11.215
20 3E70 GDP 12
21 2WOR 2AN 12
22 2ZJ5 ADP 12.1622
23 3MDV CL6 12.2807
24 2XN3 ID8 12.5
25 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 12.7273
26 4WGF HX2 12.7273
27 3BJC WAN 12.7273
28 2WH8 II2 12.7273
29 2MAS PIR 12.8
30 2O5L MNR 13.0719
31 2YLD CMO 13.3858
32 5UGW GSH 13.5135
33 3O01 DXC 13.6
34 3PMD 11A 14.0187
35 3R9V DXC 14.3357
36 4ARE FLC 14.4
37 3TL1 JRO 14.5455
38 4N4J HG1 14.5455
39 4XCP PLM 14.8649
40 4LWU 20U 14.8649
41 5WXU IAC 14.8649
42 2AK3 AMP 14.8649
43 4O4Z N2O 14.9351
44 4V3I ASP LEU THR ARG PRO 14.9533
45 2F2G HMH 14.9533
46 4H6B 10X 14.9606
47 1GEG GLC 15.0538
48 1XZ3 ICF 15.2
49 2ALG DAO 15.2174
50 5CHR 4NC 15.3285
51 4EKQ NPO 15.508
52 4OB6 S2T 16.129
53 4G8R 96P 16.129
54 5NNT DPV 16.2162
55 1J78 VDY 16.2162
56 5TVI MYR 16.3043
57 5TVI O8N 16.3043
58 1J1R ADE 16.3636
59 3N7S 3N7 16.5217
60 6A56 LAT 17.0732
61 4MG9 27K 17.2043
62 3VVY ET 17.2043
63 3ZJQ NCA 17.3228
64 4MRP GSH 17.6
65 1RV1 IMZ 17.6471
66 6BMM OLB 17.7474
67 1OJ4 CDM 17.757
68 3OKI OKI 18.0258
69 1JGS SAL 18.1159
70 2VVM PRO 18.1818
71 1GVE CIT 18.1818
72 3P9T TCL 18.2796
73 3CHT 4NB 18.4
74 4UCC ZKW 18.4549
75 4QBK 3NZ 18.9189
76 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 19.2
77 3KP6 SAL 19.2053
78 1L0I PSR 19.2308
79 6CGN DA 19.4595
80 4YUS FMN 19.6262
81 1YRX FMN 19.8347
82 3V78 ET 20
83 3W5N RAM 20
84 5A86 D7E 20.4301
85 5NM7 GLY 20.5607
86 3ZQE DXC 20.5607
87 1UO4 PIH 20.5882
88 5KAU RHQ 20.6061
89 3KO0 TFP 20.7921
90 2IZ1 ATR 20.8
91 3AQT RCO 20.8
92 5FH7 5XL 21.4953
93 5VZ0 2BA 21.6216
94 6F8A HIS 21.8182
95 1RL4 BL5 21.8182
96 5V4R MGT 22.2222
97 5C9J DAO 22.2222
98 1NU4 MLA 22.6804
99 6BVI EC4 22.973
100 6BVK EAV 22.973
101 6BVL EBY 22.973
102 6BVM EBV 22.973
103 6BVJ EAS 22.973
104 4URX FK1 22.973
105 1MT1 AG2 23.0769
106 5MWE TCE 23.4568
107 1N13 AG2 23.8938
108 2QQD AG2 24.1071
109 2QQC AG2 24.1071
110 6GMN F4E 24.7423
111 2PEH LYS ARG LYS SER ARG TRP ASP GLU THR PRO 24.7619
112 4DOO DAO 24.8
113 4F4S EFO 25
114 3ANY 2A3 25.2336
115 2Y69 CHD 25.3968
116 4R29 SAM 25.8065
117 5Y02 HBX 26.1682
118 5Y02 MXN 26.1682
119 5OSW DIU 27.027
120 5EI3 5O8 27.027
121 1AUA BOG 27.027
122 2GWH PCI 27.2727
123 3RV5 DXC 28.0899
124 3HW5 AMP 28.3784
125 2VDY HCY 28.8
126 5W7B MYR 29.0909
127 3G58 988 29.7297
128 3E3U NVC 30.9091
129 1XMY ROL 32.4324
130 5ZCO CHD 34.0426
131 5W97 CHD 34.0426
132 5ZCO PGV 34.0426
133 5Z84 CHD 34.0426
134 2VWA PTY 37.6238
135 6BR8 PGV 41.8919
136 6BR9 PGV 41.8919
137 1M2Z BOG 42.8571
138 4OGQ 2WD 49.7674
139 4OGQ 7PH 49.7674
140 4OGQ 1O2 49.7674
Pocket No.: 2; Query (leader) PDB : 1EZV; Ligand: SMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1ezv.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1EZV; Ligand: UQ6; Similar sites found with APoc: 18
This union binding pocket(no: 3) in the query (biounit: 1ezv.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 3L1N PLM 5.15464
2 5CSD ACD 10.0629
3 5AZC PGT 10.4
4 4FFG LBS 10.9091
5 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 11.7155
6 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 12.7273
7 5BYK OAQ 13.5135
8 5BYK A3P 13.5135
9 3R9V DXC 14.3357
10 5XJ7 87O 15.8879
11 4MGA 27L 17.2043
12 4MRP GSH 17.6
13 3KP6 SAL 19.2053
14 1L0I PSR 19.2308
15 4M51 BEZ 29.0323
16 5IUY BOG 29.0909
17 1M2Z BOG 42.8571
18 4OGQ 7PH 49.7674
Pocket No.: 4; Query (leader) PDB : 1EZV; Ligand: UQ6; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1ezv.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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