Receptor
PDB id Resolution Class Description Source Keywords
1GW1 1.65 Å EC: 3.2.1.78 SUBSTRATE DISTORTION BY BETA-MANNANASE FROM PSEUDOMONAS CELL PSEUDOMONAS CELLULOSA HYDROLASE GLYCOSIDE HYDROLASE GLYCOSIDASE
Ref.: SUBSTRATE DISTORTION BY A BETA-MANNANASE: SNAPSHOTS MICHAELIS AND COVALENT-INTERMEDIATE COMPLEXES SUGGE CONFORMATION FOR THE TRANSITION STATE ANGEW.CHEM.INT.ED.ENGL. V. 41 2824 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NA A:1423;
 Part of Protein;
 none;
 submit data
22.99 Na [Na+]
NIN MBF BMA BMA A:1429;
 Valid;
 none;
 submit data
n/a n/a
TRS A:1430;
A:1431;
 Invalid;
Invalid;
 none;
none;
 submit data
122.143 C4 H12 N O3 C(C(C...
ZN A:1422;
A:1424;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
65.409 Zn [Zn+2...
MAF BMA BMA B:1;
 Part of Protein;
 none;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1ODZ 1.4 Å EC: 3.2.1.78 EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUCE DEFINED OLIGOSACCHARIDES CELLVIBRIO JAPONICUS HYDROLASE MANNANASE FAMILY 26 GLYCOSIDE-HYDROLASE GLYCOSMANNO-OLIGOSACCHARIDE
Ref.: EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUC MANNO-OLIGOSACCHARIDES CHEM.COMMUN.(CAMB.) V. 12 1327 2003
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 1ODZ - MAN BMA n/a n/a
2 1GVY - MBF NIN BMA BMA n/a n/a
3 1GW1 - NIN MBF BMA BMA n/a n/a
4 2WHM - MAN BMA n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 1ODZ - MAN BMA n/a n/a
2 1GVY - MBF NIN BMA BMA n/a n/a
3 1GW1 - NIN MBF BMA BMA n/a n/a
4 2WHM - MAN BMA n/a n/a
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1ODZ - MAN BMA n/a n/a
2 1GVY - MBF NIN BMA BMA n/a n/a
3 1GW1 - NIN MBF BMA BMA n/a n/a
4 2WHM - MAN BMA n/a n/a
5 2VX7 - BMA BMA n/a n/a
6 2VX6 - BMA BMA BMA BMA GLA n/a n/a
7 2VX5 - BMA C6 H12 O6 C([C@@H]1[....
8 4CD4 Ki = 263 nM BMA IFM n/a n/a
9 4CD5 Ki = 194 nM BMA MVL n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: NIN MBF BMA BMA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: NIN MBF BMA BMA; Similar ligands found: 1
No: Ligand Similarity coefficient
1 NIN MBF BMA BMA 1.0000
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1ODZ; Ligand: MAN BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1odz.bio2) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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