Receptor
PDB id Resolution Class Description Source Keywords
6YZ0 2.3 Å NON-ENZYME: TRANSPORT FULL LENGTH OPEN-FORM SODIUM CHANNEL NAVMS F208L IN COMPLEX CANNABIDIOL (CBD) MAGNETOCOCCUS MARINUS MC-1 VOLTAGE GATED SODIUM CHANNEL MEMBRANE PROTEIN. METAL TRANS
Ref.: CANNABIDIOL INTERACTIONS WITH VOLTAGE-GATED SODIUM ELIFE V. 9 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
2CV A:304;
 Invalid;
 none;
 submit data
379.489 C18 H37 N O7 CCCCC...
NA A:302;
A:303;
A:301;
 Invalid;
Invalid;
Invalid;
 none;
none;
none;
 submit data
22.99 Na [Na+]
CD0 A:306;
 Valid;
 none;
 submit data
316.478 C21 H32 O2 CCCCC...
12P A:305;
 Invalid;
 none;
 submit data
546.646 C24 H50 O13 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6YZ0 2.3 Å NON-ENZYME: TRANSPORT FULL LENGTH OPEN-FORM SODIUM CHANNEL NAVMS F208L IN COMPLEX CANNABIDIOL (CBD) MAGNETOCOCCUS MARINUS MC-1 VOLTAGE GATED SODIUM CHANNEL MEMBRANE PROTEIN. METAL TRANS
Ref.: CANNABIDIOL INTERACTIONS WITH VOLTAGE-GATED SODIUM ELIFE V. 9 2020
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 232 families.
1 6YZ0 - CD0 C21 H32 O2 CCCCCc1cc(....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 197 families.
1 6YZ0 - CD0 C21 H32 O2 CCCCCc1cc(....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 165 families.
1 6YZ0 - CD0 C21 H32 O2 CCCCCc1cc(....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: CD0; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 CD0 1 1
Similar Ligands (3D)
Ligand no: 1; Ligand: CD0; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6YZ0; Ligand: CD0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6yz0.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 6YZ0; Ligand: CD0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 6yz0.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 6YZ0; Ligand: CD0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 6yz0.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 6YZ0; Ligand: CD0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 6yz0.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
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