Receptor
PDB id Resolution Class Description Source Keywords
6MG5 1.8 Å NON-ENZYME: OTHER STRUCTURE OF FULL-LENGTH HUMAN LAMBDA-6A LIGHT CHAIN JTO IN WITH COUMARIN 1 HOMO SAPIENS LIGHT CHAIN AMYLOIDOSIS IMMUNE SYSTEM
Ref.: STABILIZATION OF AMYLOIDOGENIC IMMUNOGLOBULIN LIGHT BY SMALL MOLECULES. PROC.NATL.ACAD.SCI.USA V. 116 8360 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
6ZW B:302;
 Valid;
 none;
 Kd = 20.3 uM
231.29 C14 H17 N O2 CCN(C...
PO4 A:301;
B:301;
 Invalid;
Invalid;
 none;
none;
 submit data
94.971 O4 P [O-]P...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6MG5 1.8 Å NON-ENZYME: OTHER STRUCTURE OF FULL-LENGTH HUMAN LAMBDA-6A LIGHT CHAIN JTO IN WITH COUMARIN 1 HOMO SAPIENS LIGHT CHAIN AMYLOIDOSIS IMMUNE SYSTEM
Ref.: STABILIZATION OF AMYLOIDOGENIC IMMUNOGLOBULIN LIGHT BY SMALL MOLECULES. PROC.NATL.ACAD.SCI.USA V. 116 8360 2019
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6W4Y - 7ZW C16 H18 F3 N3 O3 CC(C)C[C@@....
2 6MG5 Kd = 20.3 uM 6ZW C14 H17 N O2 CCN(CC)c1c....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6W4Y - 7ZW C16 H18 F3 N3 O3 CC(C)C[C@@....
2 6MG5 Kd = 20.3 uM 6ZW C14 H17 N O2 CCN(CC)c1c....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 6W4Y - 7ZW C16 H18 F3 N3 O3 CC(C)C[C@@....
2 6MG5 Kd = 20.3 uM 6ZW C14 H17 N O2 CCN(CC)c1c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 6ZW; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 6ZW 1 1
2 EJO 0.438596 0.951219
Similar Ligands (3D)
Ligand no: 1; Ligand: 6ZW; Similar ligands found: 576
No: Ligand Similarity coefficient
1 JP2 0.9518
2 2JK 0.9358
3 DBS 0.9276
4 57D 0.9271
5 N2M 0.9255
6 DK1 0.9252
7 CNI 0.9251
8 H7S 0.9237
9 YE7 0.9208
10 N1E 0.9198
11 GNG 0.9198
12 FQX 0.9197
13 5GT 0.9183
14 B21 0.9181
15 H70 0.9173
16 4L2 0.9173
17 V1T 0.9165
18 3JC 0.9156
19 HRM 0.9145
20 5TY 0.9137
21 GA2 0.9132
22 YE6 0.9114
23 DNQ 0.9102
24 CL9 0.9100
25 NRA 0.9097
26 DPT 0.9095
27 BGU 0.9086
28 NIY 0.9082
29 JWS 0.9081
30 S60 0.9079
31 3L1 0.9077
32 JY4 0.9076
33 3RP 0.9074
34 WUB 0.9070
35 BQ2 0.9069
36 LUM 0.9069
37 FCD 0.9068
38 B4O 0.9067
39 X2M 0.9063
40 II4 0.9055
41 GNM 0.9052
42 SG2 0.9051
43 KLV 0.9049
44 GDL 0.9048
45 AJ4 0.9048
46 SKF 0.9048
47 JTA 0.9048
48 HBO 0.9047
49 MUX 0.9044
50 BIK 0.9043
51 BZE 0.9042
52 6QF 0.9040
53 ANC 0.9037
54 2J1 0.9036
55 GNV 0.9033
56 7I2 0.9030
57 6FB 0.9028
58 AH9 0.9027
59 X0T 0.9026
60 Q11 0.9026
61 IL5 0.9026
62 CUT 0.9026
63 7D7 0.9025
64 S98 0.9025
65 AVX 0.9022
66 4GU 0.9015
67 5E5 0.9014
68 3D1 0.9010
69 5SJ 0.9009
70 0SY 0.9009
71 GL6 0.9007
72 5WT 0.9007
73 1ZC 0.9006
74 CZ0 0.9001
75 78Y 0.9001
76 DCF 0.9000
77 F5C 0.8997
78 NAG 0.8991
79 ZHA 0.8990
80 AJY 0.8990
81 SLS 0.8989
82 MBP 0.8988
83 CKA 0.8988
84 9ZE 0.8987
85 CTE 0.8986
86 78P 0.8983
87 2GD 0.8980
88 AH6 0.8977
89 Y3L 0.8977
90 4XF 0.8973
91 EV2 0.8970
92 ITE 0.8969
93 4FF 0.8967
94 5F1 0.8966
95 47V 0.8966
96 G6P 0.8965
97 BG6 0.8965
98 ZYV 0.8963
99 KWB 0.8960
100 1FE 0.8956
101 F2W 0.8955
102 PE2 0.8955
103 X11 0.8954
104 3VX 0.8954
105 ZRK 0.8954
106 FF2 0.8951
107 DT7 0.8951
108 28A 0.8945
109 3WL 0.8944
110 OX2 0.8942
111 0DN 0.8942
112 H4B 0.8942
113 4R1 0.8940
114 2WU 0.8940
115 8HG 0.8940
116 0JD 0.8939
117 BZJ 0.8939
118 XYP XDN 0.8937
119 ET0 0.8935
120 344 0.8934
121 4G2 0.8934
122 QIV 0.8933
123 HA5 0.8932
124 E1T 0.8931
125 8NB 0.8931
126 2FA 0.8927
127 CDY 0.8925
128 J38 0.8924
129 THM 0.8924
130 4I8 0.8922
131 5AD 0.8922
132 TXW 0.8921
133 GZV 0.8920
134 L3L 0.8919
135 UKV 0.8915
136 0GA 0.8912
137 ZYQ 0.8912
138 6TJ 0.8911
139 8NX 0.8911
140 30G 0.8911
141 FER 0.8911
142 6HP 0.8911
143 3J8 0.8910
144 F40 0.8910
145 2GQ 0.8909
146 DXK 0.8907
147 GJP 0.8905
148 TCR 0.8901
149 CC6 0.8900
150 MXD 0.8898
151 LL1 0.8897
152 W29 0.8896
153 CUH 0.8896
154 MUR 0.8894
155 CSN 0.8894
156 GNY 0.8893
157 JRO 0.8893
158 L22 0.8893
159 IA2 0.8892
160 7L4 0.8891
161 1QV 0.8889
162 LFN 0.8889
163 9CE 0.8888
164 JOV 0.8887
165 GO2 0.8886
166 NE2 0.8885
167 H2B 0.8885
168 9UL 0.8883
169 LLT 0.8881
170 0XT 0.8881
171 KF5 0.8880
172 4AB 0.8880
173 5V7 0.8879
174 0FK 0.8878
175 AH3 0.8878
176 HBI 0.8876
177 M3E 0.8875
178 15N 0.8874
179 GMP 0.8874
180 428 0.8870
181 KYN 0.8870
182 HA6 0.8870
183 L5D 0.8870
184 6J3 0.8869
185 IQ5 0.8868
186 DX7 0.8867
187 5B2 0.8867
188 2D2 0.8867
189 28B 0.8866
190 7AP 0.8865
191 QMS 0.8865
192 IAC 0.8864
193 2P3 0.8864
194 N91 0.8864
195 TMG 0.8863
196 CC5 0.8862
197 1VK 0.8862
198 774 0.8862
199 Q4G 0.8860
200 IOS 0.8858
201 JCZ 0.8858
202 K97 0.8858
203 THA 0.8858
204 8HC 0.8856
205 TRP 0.8855
206 2LW 0.8855
207 3DT 0.8854
208 ZME 0.8852
209 1DA 0.8852
210 3AD 0.8850
211 BIO 0.8850
212 0DF 0.8849
213 IQQ 0.8848
214 KMY 0.8846
215 3Y7 0.8845
216 5F8 0.8845
217 FY8 0.8843
218 27B 0.8843
219 ZRL 0.8842
220 EQA 0.8841
221 ANF 0.8840
222 XCG 0.8839
223 MIL 0.8839
224 14Z 0.8837
225 PRL 0.8835
226 N0Z 0.8835
227 5GV 0.8833
228 2UD 0.8833
229 6PB 0.8832
230 AC2 0.8831
231 363 0.8828
232 3D8 0.8828
233 7EH 0.8828
234 5TZ 0.8827
235 1HN 0.8827
236 833 0.8826
237 KYA 0.8826
238 2J2 0.8825
239 9KZ 0.8823
240 ARP 0.8823
241 C0H 0.8822
242 68A 0.8821
243 2QV 0.8821
244 4RU 0.8819
245 V2Z 0.8819
246 ARJ 0.8818
247 RSV 0.8814
248 APS 0.8811
249 5WS 0.8810
250 XEV 0.8810
251 EXX 0.8808
252 BPU 0.8807
253 2QU 0.8805
254 NDG 0.8801
255 BPY 0.8801
256 5P3 0.8801
257 0W1 0.8799
258 AA 0.8798
259 P4L 0.8798
260 WS7 0.8798
261 DAH 0.8797
262 2JX 0.8797
263 RKV 0.8796
264 X0U 0.8796
265 GLP 0.8795
266 GNJ 0.8794
267 AY4 0.8793
268 ZSP 0.8793
269 K68 0.8791
270 3QV 0.8790
271 MR6 0.8790
272 M78 0.8789
273 4F8 0.8788
274 BA5 0.8788
275 M5H 0.8788
276 NIR 0.8788
277 KTW 0.8785
278 DBF 0.8785
279 AJG 0.8785
280 HHS 0.8783
281 B4L 0.8783
282 2O6 0.8782
283 X48 0.8780
284 0OK 0.8780
285 9JT 0.8777
286 DDC 0.8776
287 DT9 0.8776
288 OCZ 0.8775
289 ZIQ 0.8775
290 P83 0.8774
291 DUR 0.8774
292 K7H 0.8773
293 XIF XYP 0.8772
294 51Y 0.8772
295 XYP XIF 0.8770
296 6X9 0.8769
297 PCQ 0.8769
298 LJ3 0.8769
299 AN3 0.8769
300 PMP 0.8767
301 8XL 0.8765
302 ZEA 0.8765
303 DRG 0.8763
304 22L 0.8763
305 JF8 0.8761
306 53X 0.8761
307 5WK 0.8760
308 4BL 0.8759
309 JVD 0.8759
310 0J2 0.8758
311 3BH 0.8757
312 R9Y 0.8756
313 6L6 0.8755
314 6JO 0.8753
315 B86 0.8750
316 1DR 0.8750
317 HRD 0.8748
318 BP7 0.8747
319 XTS 0.8747
320 GHM 0.8744
321 SOV 0.8744
322 PLP 0.8744
323 JG8 0.8743
324 TIA 0.8743
325 ELH 0.8742
326 DCZ 0.8742
327 AMR 0.8741
328 NWD 0.8741
329 9F8 0.8738
330 UN4 0.8738
331 PIQ 0.8737
332 ADN 0.8733
333 Q5M 0.8732
334 KCH 0.8732
335 0J4 0.8732
336 WS6 0.8731
337 A73 0.8729
338 DNA 0.8728
339 5FL 0.8728
340 G14 0.8727
341 FYR 0.8727
342 5E4 0.8727
343 GO8 0.8727
344 X0W 0.8726
345 QKU 0.8724
346 108 0.8724
347 IOP 0.8723
348 55D 0.8722
349 NPX 0.8722
350 NCV 0.8721
351 4BY 0.8720
352 AVA 0.8719
353 1X8 0.8719
354 0UL 0.8719
355 1A5 0.8718
356 EVF 0.8718
357 AGI 0.8717
358 0FR 0.8715
359 ESI 0.8715
360 4KL 0.8715
361 A5H 0.8714
362 PEY 0.8713
363 XM5 0.8712
364 2K8 0.8712
365 39Z 0.8711
366 MAJ 0.8711
367 5N5 0.8711
368 JB8 0.8710
369 KW8 0.8709
370 MD6 0.8709
371 7ZL 0.8708
372 9BF 0.8707
373 FHV 0.8706
374 54X 0.8706
375 B23 0.8705
376 TR4 0.8705
377 27M 0.8705
378 MNX 0.8705
379 THU 0.8705
380 E7S 0.8704
381 NQ7 0.8703
382 JF2 0.8703
383 MR4 0.8702
384 LR2 0.8701
385 QME 0.8697
386 D9Z 0.8697
387 AD3 0.8697
388 1V1 0.8695
389 A 0.8695
390 G1P 0.8694
391 6KT 0.8693
392 GJK 0.8693
393 P9E 0.8693
394 A5P 0.8691
395 1F1 0.8689
396 JF1 0.8688
397 H5B 0.8688
398 ZZA 0.8688
399 0LO 0.8687
400 C4E 0.8686
401 RVE 0.8685
402 D87 0.8685
403 5I5 0.8683
404 FT6 0.8682
405 HPR 0.8682
406 B98 0.8681
407 MUK 0.8681
408 19E 0.8681
409 4V2 0.8680
410 4AU 0.8680
411 PRH 0.8679
412 BZC 0.8679
413 ESX 0.8676
414 S0D 0.8676
415 EXD 0.8675
416 PUR 0.8674
417 YZ9 0.8673
418 LDC 0.8673
419 8G6 0.8673
420 6DQ 0.8673
421 UA2 0.8672
422 4CN 0.8672
423 CH9 0.8671
424 1AJ 0.8671
425 Q9T 0.8671
426 92O 0.8671
427 NEU 0.8671
428 BZQ 0.8670
429 VUP 0.8669
430 UFO 0.8668
431 3ZB 0.8668
432 NAR 0.8668
433 EUE 0.8667
434 CK1 0.8667
435 NE1 0.8666
436 6J9 0.8666
437 3DE 0.8666
438 IQZ 0.8665
439 3VQ 0.8665
440 1YL 0.8665
441 2KU 0.8665
442 DHC 0.8664
443 S0E 0.8664
444 9GP 0.8664
445 NKI 0.8663
446 IMH 0.8662
447 NEO 0.8661
448 8HH 0.8661
449 P9I 0.8658
450 Z21 0.8658
451 BHS 0.8658
452 9FE 0.8657
453 5NB 0.8656
454 3R4 0.8654
455 2FX 0.8654
456 5CD 0.8653
457 WV7 0.8652
458 CR1 0.8650
459 DFL 0.8649
460 A4D 0.8648
461 8W9 0.8648
462 JDN 0.8647
463 XG1 0.8647
464 PPY 0.8647
465 NOS 0.8646
466 CX6 0.8646
467 O9Q 0.8644
468 7FU 0.8644
469 ZYW 0.8643
470 ESP 0.8642
471 1A7 0.8641
472 K25 0.8641
473 UL1 0.8639
474 WLH 0.8638
475 K44 0.8638
476 4I5 0.8638
477 P80 0.8636
478 XYA 0.8635
479 5NN 0.8635
480 GZ2 0.8635
481 TIY 0.8635
482 JGB 0.8633
483 20D 0.8632
484 C9E 0.8631
485 18E 0.8629
486 ALR 0.8629
487 VM1 0.8629
488 67Y 0.8628
489 DNF 0.8627
490 CCV 0.8626
491 FCW 0.8626
492 C09 0.8626
493 GF4 0.8625
494 25F 0.8625
495 VCE 0.8624
496 MR5 0.8622
497 7O4 0.8622
498 ZEC 0.8622
499 BBY 0.8620
500 NPS 0.8620
501 I2E 0.8617
502 XFE 0.8617
503 6EN 0.8615
504 E1K 0.8615
505 JAW 0.8614
506 T1N 0.8614
507 EYY 0.8614
508 RGK 0.8613
509 IK1 0.8612
510 1V3 0.8612
511 5FD 0.8611
512 3TC 0.8611
513 LEL 0.8610
514 CMG 0.8610
515 RFZ 0.8609
516 5F5 0.8609
517 MPP 0.8606
518 H35 0.8606
519 G30 0.8605
520 EAT 0.8605
521 XI7 0.8605
522 113 0.8603
523 M1Z 0.8603
524 6QT 0.8600
525 HFZ 0.8600
526 CX4 0.8597
527 0HO 0.8597
528 YEX 0.8596
529 RPP 0.8593
530 5ID 0.8591
531 DDU 0.8591
532 0HN 0.8590
533 L07 0.8589
534 3A9 0.8589
535 61M 0.8587
536 A5Q 0.8587
537 A9B 0.8585
538 MMJ 0.8585
539 VXX 0.8584
540 15E 0.8584
541 BZ2 0.8584
542 BGP 0.8582
543 1KP 0.8581
544 IDZ 0.8580
545 22T 0.8579
546 EWG 0.8579
547 HNT 0.8578
548 PVQ 0.8578
549 ZYR 0.8577
550 9NB 0.8575
551 5RP 0.8574
552 1XS 0.8573
553 64E 0.8573
554 TLF 0.8573
555 1L5 0.8571
556 1HR 0.8569
557 URI 0.8565
558 6NI 0.8565
559 4NP 0.8562
560 SZ5 0.8559
561 4MU 0.8556
562 6NT 0.8553
563 IPD 0.8552
564 M3F 0.8551
565 4NO 0.8550
566 0RY 0.8546
567 SU9 0.8546
568 2ZM 0.8545
569 RCV 0.8544
570 3F4 0.8540
571 PVK 0.8539
572 ICB 0.8538
573 4ZF 0.8533
574 F31 0.8532
575 7G2 0.8524
576 D3G 0.8516
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6MG5; Ligand: 6ZW; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6mg5.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
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