Receptor
PDB id Resolution Class Description Source Keywords
6KPO 2.36 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM MILITARIS D154N/E156Q MUTANT IN COMPLEX WITH FUCOSYL-N- A CETYLGLUCOSAMINE-ASN CORDYCEPS MILITARIS CM01 TIM BARREL HYDROLASE
Ref.: STRUCTURAL BASIS FOR THE SPECIFIC CLEAVAGE OF CORE-FUCOSYLATEDN-GLYCANS BY ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM THE FUNGUSCO MILITARIS. J.BIOL.CHEM. V. 294 17143 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PGE A:401;
 Invalid;
 none;
 submit data
150.173 C6 H14 O4 C(COC...
PEG A:403;
A:402;
 Invalid;
Invalid;
 none;
none;
 submit data
106.12 C4 H10 O3 C(COC...
NAG ASN FUC B:1;
 Valid;
 none;
 submit data
480.447 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6KPM 1.8 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM MILITARIS IN COMPLEX WITH L-FUCOSE CORDYCEPS MILITARIS CM01 TIM BARREL HYDROLASE
Ref.: STRUCTURAL BASIS FOR THE SPECIFIC CLEAVAGE OF CORE-FUCOSYLATEDN-GLYCANS BY ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM THE FUNGUSCO MILITARIS. J.BIOL.CHEM. V. 294 17143 2019
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 312 families.
1 6KPN - NAG FUC n/a n/a
2 6KPO - NAG ASN FUC n/a n/a
3 6KPM - FUC C6 H12 O5 C[C@H]1[C@....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 6KPN - NAG FUC n/a n/a
2 6KPO - NAG ASN FUC n/a n/a
3 6KPM - FUC C6 H12 O5 C[C@H]1[C@....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 6KPN - NAG FUC n/a n/a
2 6KPO - NAG ASN FUC n/a n/a
3 6KPM - FUC C6 H12 O5 C[C@H]1[C@....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: NAG ASN FUC; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG ASN FUC 1 1
2 NAG MEE FUC 0.511905 0.793103
3 NAG ASN NAG BMA MAN MAN NAG NAG 0.457627 0.981818
Similar Ligands (3D)
Ligand no: 1; Ligand: NAG ASN FUC; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6KPM; Ligand: FUC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6kpm.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
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