Receptor
PDB id Resolution Class Description Source Keywords
6FKD 2.49 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF N2C/D282C STABILIZED OPSIN BOUND TO RS1 BOS TAURUS RHODOPSIN G PROTEIN-COUPLED RECEPTORS RETINITIS PIGMENTOSASIGNALING PROTEIN SENSORY TRANSDUCTION PHOTORECEPTOR PROTKINTEGRAL MEMBRANE PROTEIN VISION MEMBRANE RECEPTOR TRAPHOTORECEPTOR SMALL MOLECULE COMPLEX MEMBRANE PROTEIN
Ref.: LIGAND CHANNEL IN PHARMACOLOGICALLY STABILIZED RHOD PROC. NATL. ACAD. SCI. V. 115 3640 2018 U.S.A.
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BOG A:409;
A:408;
A:407;
A:411;
A:410;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
 submit data
292.369 C14 H28 O6 CCCCC...
PLM A:401;
 Invalid;
 none;
 submit data
256.424 C16 H32 O2 CCCCC...
DL2 A:412;
 Valid;
 none;
 submit data
360.792 C18 H17 Cl N2 O4 c1ccc...
NAG NAG BMA MAN MAN B:1;
 Invalid;
 none;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6FK6 2.36 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF N2C/D282C STABILIZED OPSIN BOUND TO RS0 BOS TAURUS RHODOPSIN G PROTEIN-COUPLED RECEPTORS RETINITIS PIGMENTOSASIGNALING PROTEIN SENSORY TRANSDUCTION PHOTORECEPTOR PROTKINTEGRAL MEMBRANE PROTEIN VISION MEMBRANE RECEPTOR TRAPHOTORECEPTOR SMALL MOLECULE COMPLEX MEMBRANE PROTEIN
Ref.: LIGAND CHANNEL IN PHARMACOLOGICALLY STABILIZED RHOD PROC. NATL. ACAD. SCI. V. 115 3640 2018 U.S.A.
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6FK6 - DOK C22 H24 Cl N O3 CC(C)[C@@H....
2 6FKC - DLB C25 H28 Cl N O5 CC(C)[C@@H....
3 6FKD - DL2 C18 H17 Cl N2 O4 c1ccc2c(c1....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6FK6 - DOK C22 H24 Cl N O3 CC(C)[C@@H....
2 6FKC - DLB C25 H28 Cl N O5 CC(C)[C@@H....
3 6FKD - DL2 C18 H17 Cl N2 O4 c1ccc2c(c1....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 6FK6 - DOK C22 H24 Cl N O3 CC(C)[C@@H....
2 6FKC - DLB C25 H28 Cl N O5 CC(C)[C@@H....
3 6FKD - DL2 C18 H17 Cl N2 O4 c1ccc2c(c1....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: DL2; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 DL2 1 1
Similar Ligands (3D)
Ligand no: 1; Ligand: DL2; Similar ligands found: 5
No: Ligand Similarity coefficient
1 DOK 0.8978
2 AGX 0.8818
3 7IG 0.8620
4 P36 0.8578
5 D6X 0.8535
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6FK6; Ligand: DOK; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6fk6.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback