Receptor
PDB id Resolution Class Description Source Keywords
6FI2 1.22 Å NON-ENZYME: OTHER VEXL: A PERIPLASMIC DEPOLYMERASE PROVIDES NEW INSIGHT INTO A TRANSPORTER-DEPENDENT SECRETION OF BACTERIAL CAPSULAR POLYS ACHROMOBACTER DENITRIFICANS CARBOHYDRATE BIOSYNTHESIS CELL-SURFACE PECTATE LYASE VI ALYASE
Ref.: PERIPLASMIC DEPOLYMERASE PROVIDES INSIGHT INTO ABC TRANSPORTER-DEPENDENT SECRETION OF BACTERIAL CAPSUL POLYSACCHARIDES. PROC. NATL. ACAD. SCI. V. 115 E4870 2018 U.S.A.
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
DJB DJB DJE B:1;
 Valid;
 none;
 submit data
750.596 n/a O=C(O...
MLI A:501;
 Invalid;
 none;
 submit data
102.046 C3 H2 O4 C(C(=...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6FI2 1.22 Å NON-ENZYME: OTHER VEXL: A PERIPLASMIC DEPOLYMERASE PROVIDES NEW INSIGHT INTO A TRANSPORTER-DEPENDENT SECRETION OF BACTERIAL CAPSULAR POLYS ACHROMOBACTER DENITRIFICANS CARBOHYDRATE BIOSYNTHESIS CELL-SURFACE PECTATE LYASE VI ALYASE
Ref.: PERIPLASMIC DEPOLYMERASE PROVIDES INSIGHT INTO ABC TRANSPORTER-DEPENDENT SECRETION OF BACTERIAL CAPSUL POLYSACCHARIDES. PROC. NATL. ACAD. SCI. V. 115 E4870 2018 U.S.A.
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6FI2 - DJB DJB DJE n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6FI2 - DJB DJB DJE n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 6FI2 - DJB DJB DJE n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: DJB DJB DJE; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 DJB DJB DJE 1 1
2 NAG BDP 0.423529 0.8
3 NAG BDP NAG BDP NAG BDP NAG 0.4 0.86
Similar Ligands (3D)
Ligand no: 1; Ligand: DJB DJB DJE; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6FI2; Ligand: DJB DJB DJE; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6fi2.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback