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Receptor
PDB id Resolution Class Description Source Keywords
6DWI 2.39 Å NON-ENZYME: IMMUNE STRUCTURE OF THE 4462 ANTIBODY FAB FRAGMENT BOUND TO A STAPH AUREUS WALL TECHOIC ACID ANALOG HOMO SAPIENS ANTIBODY FAB WALL TEICHOIC ACID WTA STAPHYLOCOCCUS AUREUSYSTEM
Ref.: STRUCTURAL INVESTIGATION OF HUMAN S. AUREUS-TARGETI ANTIBODIES THAT BIND WALL TEICHOIC ACID. MABS V. 10 979 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL F:301;
C:301;
O:301;
B:301;
A:301;
G:301;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
submit data
35.453 Cl [Cl-]
HD4 J:301;
H:301;
D:301;
L:301;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
435.318 C13 H26 N O13 P CC(=O...
FLC G:302;
Invalid;
none;
submit data
189.1 C6 H5 O7 C(C(=...
GOL J:302;
H:302;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6DWI 2.39 Å NON-ENZYME: IMMUNE STRUCTURE OF THE 4462 ANTIBODY FAB FRAGMENT BOUND TO A STAPH AUREUS WALL TECHOIC ACID ANALOG HOMO SAPIENS ANTIBODY FAB WALL TEICHOIC ACID WTA STAPHYLOCOCCUS AUREUSYSTEM
Ref.: STRUCTURAL INVESTIGATION OF HUMAN S. AUREUS-TARGETI ANTIBODIES THAT BIND WALL TEICHOIC ACID. MABS V. 10 979 2018
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 208 families.
1 6DWI - HD4 C13 H26 N O13 P CC(=O)N[C@....
70% Homology Family (222)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 3HNT - AXR BXY BXY BXX n/a n/a
2 3HNV - AXR BXY BXY BXX n/a n/a
3 3HNS - AXR BXY BXY BXY BXX BXX n/a n/a
4 3QG6 ic50 = 0.73 nM TYR SER THR CYS TYR PHE ILE MET n/a n/a
5 3IF1 - NGA C8 H15 N O6 CC(=O)N[C@....
6 3IET Kd = 0.14 uM GLY THR LYS PRO PRO LEU GLU GLU LEU A2G n/a n/a
7 3PHQ - KDO C8 H14 O8 C1[C@H]([C....
8 2HRP - MET SER LEU PRO GLY ARG TRP LYS PRO LYS n/a n/a
9 5NBW - 8SK C20 H12 O c1ccc2c(c1....
10 6MSY - MAN MAN MAN MAN n/a n/a
11 3OAU - MAN MAN n/a n/a
12 6N35 - MAN C6 H12 O6 C([C@@H]1[....
13 6MUB - BMA MAN MAN MAN MAN n/a n/a
14 6MU3 - BMA MAN MAN MAN n/a n/a
15 3OAZ - 2M5 C8 H16 O6 C[C@@H]([C....
16 4RBP - KDO MAN MAN MAN MAN MAN n/a n/a
17 3OAY - BDF C6 H12 O6 C1[C@H]([C....
18 4OJF - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
19 4M7J Kd = 0.781 uM KDA KDO KDO n/a n/a
20 5D6C - 57S C13 H26 N O13 P CC(=O)N[C@....
21 6DWA - HD4 C13 H26 N O13 P CC(=O)N[C@....
22 2BMK Kd = 2.4 uM PDD C11 H17 N2 O7 P Cc1c(c(c(c....
23 1WC7 - PP3 C11 H17 N2 O7 P Cc1c(c(c(c....
24 1WCB Kd = 26 nM PE1 C14 H24 N3 O7 P Cc1c(c(c(c....
25 1MJ7 Kd = 4.5 nM HAL C23 H29 N2 O7 P c1ccc(cc1)....
26 1MH5 Kd = 0.61 nM HAL C23 H29 N2 O7 P c1ccc(cc1)....
27 3I9G Kd = 1.1 nM S1P C18 H38 N O5 P CCCCCCCCCC....
28 1AJ7 Kd = 135 uM NPE C11 H13 N O7 P c1cc(ccc1[....
29 1GAF Kd = 10 nM NPE C11 H13 N O7 P c1cc(ccc1[....
30 3CFD - SPB C19 H19 N O3 c1ccc(cc1)....
31 4JN2 - C24 C27 H29 N7 O3 CCOC(=O)CC....
32 1U8M - GLU LEU ASP LYS TYR ALA SER n/a n/a
33 3IDG - ALA LEU ASP LYS TRP ASP n/a n/a
34 1TJG - GLU LEU ASP LYS TRP ALA SER n/a n/a
35 1U93 - GLU GLN ASP LYS TRP ALA SER n/a n/a
36 1U8H - ALA LEU ASP LYS TRP ALA SER n/a n/a
37 1U8Q - GLU LEU GLU LYS TRP ALA SER n/a n/a
38 3IDJ - GLU LEU ASP ORN TRP ALA SER n/a n/a
39 2F5B - GLU LEU ASP LYS TRP ALA SER n/a n/a
40 1U92 - GLU ALA ASP LYS TRP GLN SER n/a n/a
41 1U8I - GLU LEU ASP LYS TRP ALA ASN n/a n/a
42 1U95 - GLU LEU ASP HIS TRP ALA SER n/a n/a
43 1U8J - GLU LEU ASP LYS TRP ALA GLY n/a n/a
44 3IDI - ALA LEU ASP LYS TRP GLN ASN n/a n/a
45 3IDN - GLU LEU ASP HOX TRP ALA SER n/a n/a
46 1U91 - GLU ASN ASP LYS TRP ALA SER n/a n/a
47 3IDM - GLU LEU ASP NRG TRP ALA SER n/a n/a
48 1U8K - LEU GLU LEU ASP LYS TRP ALA SER LEU n/a n/a
49 2C1P - FNZ C18 H15 F N4 O c1cc(ccc1C....
50 2R2E - KDE C11 H18 O8 C=CCO[C@@]....
51 3SY0 - KDA KDO KDO n/a n/a
52 3OKL - KDA KDO n/a n/a
53 2R1Y Kd = 31 uM KDR KDO n/a n/a
54 2R2B - KDA KDO KDO n/a n/a
55 2G5B - PRO THR SER SER GLU GLN ILE n/a n/a
56 2R1X Kd = 16 uM KDD KDA n/a n/a
57 3OKK - KDA KDO n/a n/a
58 3OKE - KO2 C11 H18 O9 C=CCO[C@@]....
59 3OKN - KDO KDO KDA n/a n/a
60 3HZM Kd = 0.00000145 M KDO C8 H14 O8 C1[C@H]([C....
61 2R23 Kd = 190 uM KO1 KDA n/a n/a
62 1Q9W - KDO KDO KDO n/a n/a
63 3T65 - KDA KDO n/a n/a
64 2R1W Kd = 25 uM KDB KDA n/a n/a
65 3OKO - KDA KDO KDO n/a n/a
66 3HZV - KDA KDO KDO n/a n/a
67 3T4Y - KDO C8 H14 O8 C1[C@H]([C....
68 3OKD - KDO C8 H14 O8 C1[C@H]([C....
69 3T77 - KDA KDO n/a n/a
70 3HZY Kd = 10 uM KDA KDO KDO n/a n/a
71 3HZK Kd = 30 uM KDA KDO n/a n/a
72 2R2H - KO2 C11 H18 O9 C=CCO[C@@]....
73 3BPC Kd = 16 uM KDB KDA n/a n/a
74 4HGW Kd = 0.00000145 M KTU KDO n/a n/a
75 5XQW Kd = 1.6 nM 8EU C9 H12 N O5 P CCP(=O)(O)....
76 5TKJ - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
77 6CDP - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
78 6CDM - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
79 1Y0L Kd ~ 1 nM HAN C14 H19 N3 O2 Cc1cc2c(cc....
80 1E4W Kd = 25 nM SER HIS PHE ASN GLU TYR GLU n/a n/a
81 3V52 - GLU PRO GLN ALA PRO TRP MET GLU n/a n/a
82 3UYR - GLU PRO GLN ALA PRO TRP MET GLU n/a n/a
83 3V4U - GLU PRO GLN ALA PRO TRP MET GLU GLN n/a n/a
84 3UO1 - GLU PRO GLN ALA PRO TRP MET GLU GLN n/a n/a
85 1F3D - TPM C12 H18 N3 c1cc(ccc1C....
86 2OK0 Kd = 0.2 nM DT DC n/a n/a
87 1MRF - DI C10 H13 N4 O7 P c1nc2c(n1[....
88 1MRD - IDP C10 H14 N4 O11 P2 c1nc2c(n1[....
89 1MRE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
90 5MY4 - PCA PHE ARG HIS ASP SER GLY TYR GLU VAL n/a n/a
91 3FO0 - BZH C12 H14 N4 O3 c1cc2c(cc1....
92 3FO2 - BZH C12 H14 N4 O3 c1cc2c(cc1....
93 3FO1 - BZH C12 H14 N4 O3 c1cc2c(cc1....
94 5MYO - PCA PHE ARG HIS ASP SER GLY TYR GLU VAL n/a n/a
95 1QYG - BCG C16 H19 N O4 C[N@]1[C@H....
96 1RIV - OBE C16 H19 N O5 C[N@H+]1[C....
97 1Q72 Kd = 0.00000145 M COC C17 H21 N O4 C[N@]1[C@H....
98 1RIU - RBE C15 H17 N O4 c1ccc(cc1)....
99 3FN0 Kd ~ 40 uM TRP ASN TRP PHE ASP ILE THR ASN LYS n/a n/a
100 1S3K Kd = 0.24 uM FUC GAL NDG FUC n/a n/a
101 3EYV - FUC GAL NDG FUC n/a n/a
102 5I8C - ALA VAL GLY ILE GLY ALA VAL PHE LEU n/a n/a
103 2AJX - TGN C16 H22 N O5 P C[N@]1[C@H....
104 2AJZ - ECG C10 H17 N O3 C[N@]1[C@H....
105 2AK1 - BEZ C7 H6 O2 c1ccc(cc1)....
106 2AJV - COC C17 H21 N O4 C[N@]1[C@H....
107 2AJY - ECG C10 H17 N O3 C[N@]1[C@H....
108 5VH4 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
109 1A4K Kd = 0.01 uM FRA C21 H23 N3 O7 CC(=O)Nc1c....
110 6DZN - AE3 C6 H14 O3 CCOCCOCCO
111 3IJH Kd = 100 uM KO2 C11 H18 O9 C=CCO[C@@]....
112 1YEE - PNB C13 H17 N2 O8 P c1cc(ccc1C....
113 1KN4 - PDE C13 H17 N2 O8 P C[C@@H](C(....
114 1YEG - BPN C7 H7 N O3 c1cc(ccc1C....
115 1YEK - NPO C6 H5 N O3 c1cc(ccc1[....
116 1YEI Kd = 35 nM PGG C12 H15 N2 O8 P c1cc(ccc1[....
117 1YEC - PNB C13 H17 N2 O8 P c1cc(ccc1C....
118 1YEJ Kd = 35 nM PNF C16 H23 N2 O8 P c1cc(ccc1[....
119 1YEF - PNC C14 H17 N3 O6 c1cc(ccc1C....
120 1KN2 - PNE C13 H17 N2 O8 P CC(C(=O)O)....
121 4OCX Kd = 3.6 pM MT1 C20 H23 N8 O5 CN(Cc1cnc2....
122 4S1D - 41M C16 H29 N5 O3 S C1[C@H]2[C....
123 1FLR Kd = 0.1 nM FLU C20 H12 O5 c1ccc(c(c1....
124 5JOP - GAL BGC NAG GAL n/a n/a
125 3QCU - NKN C17 H35 O7 P CCCCCCCCCC....
126 4ONF - ASP ALA GLU PHE ARG HIS ASP n/a n/a
127 1KEL Kd = 52 nM AAH C13 H19 N2 O7 P c1cc(ccc1C....
128 1JGU - HBC C20 H21 N O c1ccc(cc1)....
129 2DDQ - HRB C17 H27 N3 O5 CCCCC[C@@H....
130 2DQU Ki = 50 nM CPD C28 H36 Cl2 F3 N6 O8 P CCNC(=O)N(....
131 2DQT Ki = 50 nM CPD C28 H36 Cl2 F3 N6 O8 P CCNC(=O)N(....
132 1JGL Kd = 2 nM EST C18 H24 O2 C[C@]12CC[....
133 1A0Q Ki = 27 nM HEP C15 H22 N O6 P CCCC[C@H](....
134 2Z93 Kd = 11.1 nM END C17 H24 O7 C1C=CCO[C@....
135 2Z92 Kd = 66.7 nM ENE C22 H30 O8 C1C=CCO[C@....
136 2R0W - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
137 5EOQ - LYS ARG GLU ALA ILE VAL LYS ALA ASP GLU n/a n/a
138 3EYS Kd = 3000 nM PCA PHE ARG HIS ASP SER n/a n/a
139 2IPU - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
140 2R0Z Kd = 3400 nM ALA LYS PHE ARG HIS ASP n/a n/a
141 6EV2 - BGC C6 H12 O6 C([C@@H]1[....
142 4YHY - M3L C9 H21 N2 O2 C[N+](C)(C....
143 3TWC - AML MAN MAN MAN MAN MAN MAN MAN MAN n/a n/a
144 6B3D - MAN MAN MAN MAN MAN MAN MAN n/a n/a
145 2V17 - THR ASP HIS GLY ALA GLU n/a n/a
146 1EAP - HEP C15 H22 N O6 P CCCC[C@H](....
147 5T78 Kd = 43 nM NGA ALA PRO ASP THR ARG PRO ALA PRO n/a n/a
148 5T6P Kd = 880 nM ALA PRO ASP THR ARG PRO ALA PRO n/a n/a
149 4TUO - SIA GAL SIA GLC NGA n/a n/a
150 2HKF - LEU PRO GLY GLU GLU ASP LEU PRO GLY n/a n/a
151 1MFB - GLA MAN RAM RAM ABE MAN GLA n/a n/a
152 1MFD Kd = 4.9 uM GLA MMA ABE n/a n/a
153 1MFC - GLA MAN RAM ABE n/a n/a
154 1LO3 - AN1 C18 H16 O2 Cc1c2ccccc....
155 1LO0 - BC1 C19 H17 N3 O3 CN1c2ccccc....
156 1LO2 - OX1 C18 H16 O4 CC12c3cccc....
157 3BZ4 - EAG RAM RAM GLC RAM NAG RAM RAM GLC RAM n/a n/a
158 3C6S - RAM RAM RAM GLC NAG RAM RAM RAM GLC NAG RAM n/a n/a
159 6DWI - HD4 C13 H26 N O13 P CC(=O)N[C@....
160 1M7D Ka = 1700000 M^-1 RAM RAE MAG n/a n/a
161 1M7I Ka = 250000 M^-1 RAM RAM RAM NAG RAO n/a n/a
162 1PZ5 Kd = 4 uM MET ASP TRP ASN MET HIS ALA ALA n/a n/a
163 5TKK - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
164 1XF2 - DT DT DT n/a n/a
165 6DF1 - LEU PTR LEU n/a n/a
166 5ALB - TIQ C23 H28 F2 N6 O4 S CCCSc1nc(c....
167 5ALC - TIQ C23 H28 F2 N6 O4 S CCCSc1nc(c....
168 1NGP - NPA C8 H7 N O5 c1cc(c(cc1....
169 4ODV - GP1 Z9M n/a n/a
170 1KEG - DT 64T DT DT n/a n/a
171 1EHL - 5HT DT n/a n/a
172 1C1E - ENH C10 H5 Cl6 N O2 CN1C(=O)[C....
173 1CLY - FUC GAL NAG NON FUC n/a n/a
174 1CT8 Kd = 0.3 uM TAA C20 H21 Cl2 F3 N3 O8 P c1cc(ccc1C....
175 1CE1 - GLY THR SER SER PRO SER ALA ASP n/a n/a
176 6DW2 - HD4 C13 H26 N O13 P CC(=O)N[C@....
177 1T66 - FLU C20 H12 O5 c1ccc(c(c1....
178 3GHB - LYS GLY VAL ARG ILE GLY PRO GLY GLN ALA n/a n/a
179 2W65 - ALA CIR GLY LEU THR GLY ARG HYP GLY n/a n/a
180 5DYO - FLU C20 H12 O5 c1ccc(c(c1....
181 4UIN Kd = 24 nM QI9 C20 H24 N2 O2 COc1ccc2c(....
182 3V0W Kd = 32 nM PA1 GLC GLC GLC GM0 GLA GM0 GMH KDO KDO n/a n/a
183 3IFL - ASP ALA GLU PHE ARG HIS ASP n/a n/a
184 3IFO - ASP ALA GLU PHE ARG HIS ASP n/a n/a
185 2CGR Kd = 53 nM GAS C23 H20 N4 O2 c1ccc(cc1)....
186 1YNK - SC5 C18 H26 N4 O2 C[C@H](c1c....
187 1I7Z Kd = 0.4 uM COC C17 H21 N O4 C[N@]1[C@H....
188 2O5Z Kd = 110 mM ANO C19 H28 O2 C[C@]12CCC....
189 25C8 - GEP C19 H29 N2 O3 C[N+]1(CCC....
190 35C8 - NOX C18 H26 N2 O4 c1cc(ccc1C....
191 1FL3 Kd = 0.16 uM SPB C19 H19 N O3 c1ccc(cc1)....
192 3CFB - SPB C19 H19 N O3 c1ccc(cc1)....
193 1UB5 - SPB C19 H19 N O3 c1ccc(cc1)....
194 1IND Ka = 11000000000 M^-1 EOT C20 H28 N4 O9 S c1cc(ccc1C....
195 1ZEA Kd = 6 uM DVA DPR GLY DSN DGN DHI DTY DAS DSN n/a n/a
196 1MEX - RAC C18 H18 N2 O5 CN(C)C(=O)....
197 1UM5 - SS1 C8 H10 O C[C@@H](c1....
198 1UM4 - SH4 C17 H19 N O4 P C[C@@H](c1....
199 1VPO Kd = 0.00000145 M TES C19 H28 O2 C[C@]12CC[....
200 1C5C Kd = 110 nM TK4 C12 H11 N O7 S2 CC(=O)Nc1c....
201 2PCP Kd = 2 nM 1PC C17 H25 N c1ccc(cc1)....
202 1D6V Kd = 670 nM HOP C23 H27 N O4 c1ccc(cc1)....
203 1Q0Y Kd ~ 1 nM MOI C17 H19 N O3 C[N@]1CC[C....
204 6CDO - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
205 4YHK ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
206 4YHM ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
207 4YHO ic50 = 2.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
208 4YHI ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
209 3O6M Kd = 33 nM PRO LYS LEU GLU PRO TRP LYS HIS PRO n/a n/a
210 1IGJ Kd = 0.1 nM DGX C41 H64 O14 C[C@@H]1[C....
211 1UZ8 Kd = 10.75 uM MAG FUC GAL n/a n/a
212 4ODT - GP1 Z9M n/a n/a
213 1RUM - BEZ C7 H6 O2 c1ccc(cc1)....
214 1ND0 - DP4 C14 H23 N O Si C[N+]1(CCC....
215 3LEY - LEU LEU GLU LEU ASP LYS TRP ALA NH2 n/a n/a
216 1RUP - BEZ C7 H6 O2 c1ccc(cc1)....
217 1RU9 - BEZ C7 H6 O2 c1ccc(cc1)....
218 1RUL - BEZ C7 H6 O2 c1ccc(cc1)....
219 3LEX Kd = 6.44 nM LEU LEU GLU LEU ASP LYS TRP ALA NH2 n/a n/a
220 1RUK - BEZ C7 H6 O2 c1ccc(cc1)....
221 1NCW - BEZ C7 H6 O2 c1ccc(cc1)....
222 1RUA - BEZ C7 H6 O2 c1ccc(cc1)....
50% Homology Family (238)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 42 families.
1 3HNT - AXR BXY BXY BXX n/a n/a
2 3HNV - AXR BXY BXY BXX n/a n/a
3 3HNS - AXR BXY BXY BXY BXX BXX n/a n/a
4 3QG6 ic50 = 0.73 nM TYR SER THR CYS TYR PHE ILE MET n/a n/a
5 3IF1 - NGA C8 H15 N O6 CC(=O)N[C@....
6 3IET Kd = 0.14 uM GLY THR LYS PRO PRO LEU GLU GLU LEU A2G n/a n/a
7 3PHQ - KDO C8 H14 O8 C1[C@H]([C....
8 2HRP - MET SER LEU PRO GLY ARG TRP LYS PRO LYS n/a n/a
9 5NBW - 8SK C20 H12 O c1ccc2c(c1....
10 6MSY - MAN MAN MAN MAN n/a n/a
11 3OAU - MAN MAN n/a n/a
12 6N35 - MAN C6 H12 O6 C([C@@H]1[....
13 6MUB - BMA MAN MAN MAN MAN n/a n/a
14 6MU3 - BMA MAN MAN MAN n/a n/a
15 3OAZ - 2M5 C8 H16 O6 C[C@@H]([C....
16 4RBP - KDO MAN MAN MAN MAN MAN n/a n/a
17 3OAY - BDF C6 H12 O6 C1[C@H]([C....
18 4OJF - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
19 4M7J Kd = 0.781 uM KDA KDO KDO n/a n/a
20 5D6C - 57S C13 H26 N O13 P CC(=O)N[C@....
21 6DWA - HD4 C13 H26 N O13 P CC(=O)N[C@....
22 2BMK Kd = 2.4 uM PDD C11 H17 N2 O7 P Cc1c(c(c(c....
23 1WC7 - PP3 C11 H17 N2 O7 P Cc1c(c(c(c....
24 1WCB Kd = 26 nM PE1 C14 H24 N3 O7 P Cc1c(c(c(c....
25 1MJ7 Kd = 4.5 nM HAL C23 H29 N2 O7 P c1ccc(cc1)....
26 1MH5 Kd = 0.61 nM HAL C23 H29 N2 O7 P c1ccc(cc1)....
27 1MFA Kd = 9.1 uM GLA MMA ABE n/a n/a
28 3I9G Kd = 1.1 nM S1P C18 H38 N O5 P CCCCCCCCCC....
29 1F4X Kd = 2.6 uM MGS C12 H23 N O7 C[C@@H]1[C....
30 1AJ7 Kd = 135 uM NPE C11 H13 N O7 P c1cc(ccc1[....
31 1GAF Kd = 10 nM NPE C11 H13 N O7 P c1cc(ccc1[....
32 3CFD - SPB C19 H19 N O3 c1ccc(cc1)....
33 4JN2 - C24 C27 H29 N7 O3 CCOC(=O)CC....
34 1U8M - GLU LEU ASP LYS TYR ALA SER n/a n/a
35 3IDG - ALA LEU ASP LYS TRP ASP n/a n/a
36 1TJG - GLU LEU ASP LYS TRP ALA SER n/a n/a
37 1U93 - GLU GLN ASP LYS TRP ALA SER n/a n/a
38 1U8H - ALA LEU ASP LYS TRP ALA SER n/a n/a
39 1U8Q - GLU LEU GLU LYS TRP ALA SER n/a n/a
40 3IDJ - GLU LEU ASP ORN TRP ALA SER n/a n/a
41 2F5B - GLU LEU ASP LYS TRP ALA SER n/a n/a
42 1U92 - GLU ALA ASP LYS TRP GLN SER n/a n/a
43 1U8I - GLU LEU ASP LYS TRP ALA ASN n/a n/a
44 1U95 - GLU LEU ASP HIS TRP ALA SER n/a n/a
45 1U8J - GLU LEU ASP LYS TRP ALA GLY n/a n/a
46 3IDI - ALA LEU ASP LYS TRP GLN ASN n/a n/a
47 3IDN - GLU LEU ASP HOX TRP ALA SER n/a n/a
48 1U91 - GLU ASN ASP LYS TRP ALA SER n/a n/a
49 3IDM - GLU LEU ASP NRG TRP ALA SER n/a n/a
50 1U8K - LEU GLU LEU ASP LYS TRP ALA SER LEU n/a n/a
51 2C1P - FNZ C18 H15 F N4 O c1cc(ccc1C....
52 2R2E - KDE C11 H18 O8 C=CCO[C@@]....
53 3SY0 - KDA KDO KDO n/a n/a
54 3OKL - KDA KDO n/a n/a
55 2R1Y Kd = 31 uM KDR KDO n/a n/a
56 2R2B - KDA KDO KDO n/a n/a
57 2G5B - PRO THR SER SER GLU GLN ILE n/a n/a
58 2R1X Kd = 16 uM KDD KDA n/a n/a
59 3OKK - KDA KDO n/a n/a
60 3OKE - KO2 C11 H18 O9 C=CCO[C@@]....
61 3OKN - KDO KDO KDA n/a n/a
62 3HZM Kd = 0.00000145 M KDO C8 H14 O8 C1[C@H]([C....
63 2R23 Kd = 190 uM KO1 KDA n/a n/a
64 1Q9W - KDO KDO KDO n/a n/a
65 3T65 - KDA KDO n/a n/a
66 2R1W Kd = 25 uM KDB KDA n/a n/a
67 3OKO - KDA KDO KDO n/a n/a
68 3HZV - KDA KDO KDO n/a n/a
69 3T4Y - KDO C8 H14 O8 C1[C@H]([C....
70 3OKD - KDO C8 H14 O8 C1[C@H]([C....
71 3T77 - KDA KDO n/a n/a
72 3HZY Kd = 10 uM KDA KDO KDO n/a n/a
73 3HZK Kd = 30 uM KDA KDO n/a n/a
74 2R2H - KO2 C11 H18 O9 C=CCO[C@@]....
75 3BPC Kd = 16 uM KDB KDA n/a n/a
76 4HGW Kd = 0.00000145 M KTU KDO n/a n/a
77 5XQW Kd = 1.6 nM 8EU C9 H12 N O5 P CCP(=O)(O)....
78 5TKJ - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
79 6CDP - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
80 6CDM - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
81 1Y0L Kd ~ 1 nM HAN C14 H19 N3 O2 Cc1cc2c(cc....
82 1E4W Kd = 25 nM SER HIS PHE ASN GLU TYR GLU n/a n/a
83 3V52 - GLU PRO GLN ALA PRO TRP MET GLU n/a n/a
84 3UYR - GLU PRO GLN ALA PRO TRP MET GLU n/a n/a
85 3V4U - GLU PRO GLN ALA PRO TRP MET GLU GLN n/a n/a
86 3UO1 - GLU PRO GLN ALA PRO TRP MET GLU GLN n/a n/a
87 1F3D - TPM C12 H18 N3 c1cc(ccc1C....
88 2OK0 Kd = 0.2 nM DT DC n/a n/a
89 1MRF - DI C10 H13 N4 O7 P c1nc2c(n1[....
90 1MRD - IDP C10 H14 N4 O11 P2 c1nc2c(n1[....
91 1MRE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
92 5MY4 - PCA PHE ARG HIS ASP SER GLY TYR GLU VAL n/a n/a
93 3FO0 - BZH C12 H14 N4 O3 c1cc2c(cc1....
94 3FO2 - BZH C12 H14 N4 O3 c1cc2c(cc1....
95 3FO1 - BZH C12 H14 N4 O3 c1cc2c(cc1....
96 5DTF - 5CT C10 H23 N3 O3 C(CCNC[C@H....
97 5MYO - PCA PHE ARG HIS ASP SER GLY TYR GLU VAL n/a n/a
98 1QYG - BCG C16 H19 N O4 C[N@]1[C@H....
99 1RIV - OBE C16 H19 N O5 C[N@H+]1[C....
100 1Q72 Kd = 0.00000145 M COC C17 H21 N O4 C[N@]1[C@H....
101 1RIU - RBE C15 H17 N O4 c1ccc(cc1)....
102 3FN0 Kd ~ 40 uM TRP ASN TRP PHE ASP ILE THR ASN LYS n/a n/a
103 1S3K Kd = 0.24 uM FUC GAL NDG FUC n/a n/a
104 3EYV - FUC GAL NDG FUC n/a n/a
105 5I8C - ALA VAL GLY ILE GLY ALA VAL PHE LEU n/a n/a
106 2AJX - TGN C16 H22 N O5 P C[N@]1[C@H....
107 2AJZ - ECG C10 H17 N O3 C[N@]1[C@H....
108 2AK1 - BEZ C7 H6 O2 c1ccc(cc1)....
109 2AJV - COC C17 H21 N O4 C[N@]1[C@H....
110 2AJY - ECG C10 H17 N O3 C[N@]1[C@H....
111 5VH4 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
112 1A4K Kd = 0.01 uM FRA C21 H23 N3 O7 CC(=O)Nc1c....
113 6DZN - AE3 C6 H14 O3 CCOCCOCCO
114 3IJH Kd = 100 uM KO2 C11 H18 O9 C=CCO[C@@]....
115 1YEE - PNB C13 H17 N2 O8 P c1cc(ccc1C....
116 1KN4 - PDE C13 H17 N2 O8 P C[C@@H](C(....
117 1YEG - BPN C7 H7 N O3 c1cc(ccc1C....
118 1YEK - NPO C6 H5 N O3 c1cc(ccc1[....
119 1YEI Kd = 35 nM PGG C12 H15 N2 O8 P c1cc(ccc1[....
120 1YEC - PNB C13 H17 N2 O8 P c1cc(ccc1C....
121 1YEJ Kd = 35 nM PNF C16 H23 N2 O8 P c1cc(ccc1[....
122 1YEF - PNC C14 H17 N3 O6 c1cc(ccc1C....
123 1KN2 - PNE C13 H17 N2 O8 P CC(C(=O)O)....
124 4OCX Kd = 3.6 pM MT1 C20 H23 N8 O5 CN(Cc1cnc2....
125 4S1D - 41M C16 H29 N5 O3 S C1[C@H]2[C....
126 1FLR Kd = 0.1 nM FLU C20 H12 O5 c1ccc(c(c1....
127 5EOR - ASP VAL GLN THR GLY ARG ARG PRO TYR GLU n/a n/a
128 5JOP - GAL BGC NAG GAL n/a n/a
129 3QCU - NKN C17 H35 O7 P CCCCCCCCCC....
130 4ONF - ASP ALA GLU PHE ARG HIS ASP n/a n/a
131 1KEL Kd = 52 nM AAH C13 H19 N2 O7 P c1cc(ccc1C....
132 1JGU - HBC C20 H21 N O c1ccc(cc1)....
133 2DDQ - HRB C17 H27 N3 O5 CCCCC[C@@H....
134 2DQU Ki = 50 nM CPD C28 H36 Cl2 F3 N6 O8 P CCNC(=O)N(....
135 2DQT Ki = 50 nM CPD C28 H36 Cl2 F3 N6 O8 P CCNC(=O)N(....
136 1JGL Kd = 2 nM EST C18 H24 O2 C[C@]12CC[....
137 1A0Q Ki = 27 nM HEP C15 H22 N O6 P CCCC[C@H](....
138 2Z93 Kd = 11.1 nM END C17 H24 O7 C1C=CCO[C@....
139 2Z92 Kd = 66.7 nM ENE C22 H30 O8 C1C=CCO[C@....
140 2R0W - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
141 5EOQ - LYS ARG GLU ALA ILE VAL LYS ALA ASP GLU n/a n/a
142 3EYS Kd = 3000 nM PCA PHE ARG HIS ASP SER n/a n/a
143 2IPU - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
144 2R0Z Kd = 3400 nM ALA LYS PHE ARG HIS ASP n/a n/a
145 6EV2 - BGC C6 H12 O6 C([C@@H]1[....
146 4YHY - M3L C9 H21 N2 O2 C[N+](C)(C....
147 3TV3 - AML MAN MAN MAN MAN MAN MAN MAN MAN n/a n/a
148 3TWC - AML MAN MAN MAN MAN MAN MAN MAN MAN n/a n/a
149 6B3D - MAN MAN MAN MAN MAN MAN MAN n/a n/a
150 2V17 - THR ASP HIS GLY ALA GLU n/a n/a
151 1EAP - HEP C15 H22 N O6 P CCCC[C@H](....
152 5T78 Kd = 43 nM NGA ALA PRO ASP THR ARG PRO ALA PRO n/a n/a
153 5T6P Kd = 880 nM ALA PRO ASP THR ARG PRO ALA PRO n/a n/a
154 4TUO - SIA GAL SIA GLC NGA n/a n/a
155 1DL7 Kd = 0.32 uM NCH C11 H18 N2 O6 P C[N+](C)(C....
156 2HKF - LEU PRO GLY GLU GLU ASP LEU PRO GLY n/a n/a
157 1MFE - GLA MAN ABE n/a n/a
158 1MFB - GLA MAN RAM RAM ABE MAN GLA n/a n/a
159 1MFD Kd = 4.9 uM GLA MMA ABE n/a n/a
160 1MFC - GLA MAN RAM ABE n/a n/a
161 1LO3 - AN1 C18 H16 O2 Cc1c2ccccc....
162 1LO0 - BC1 C19 H17 N3 O3 CN1c2ccccc....
163 1LO2 - OX1 C18 H16 O4 CC12c3cccc....
164 3BZ4 - EAG RAM RAM GLC RAM NAG RAM RAM GLC RAM n/a n/a
165 3C6S - RAM RAM RAM GLC NAG RAM RAM RAM GLC NAG RAM n/a n/a
166 6DWI - HD4 C13 H26 N O13 P CC(=O)N[C@....
167 1M7D Ka = 1700000 M^-1 RAM RAE MAG n/a n/a
168 1M7I Ka = 250000 M^-1 RAM RAM RAM NAG RAO n/a n/a
169 1PZ5 Kd = 4 uM MET ASP TRP ASN MET HIS ALA ALA n/a n/a
170 5TKK - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
171 2BJM Ka < 100000 M^-1 ANF C14 H10 O c1ccc2c(c1....
172 1A6V - NPC C14 H17 N2 O6 c1cc(c(cc1....
173 1OAU Kd = 20 nM DNF SER n/a n/a
174 1A6W - NIP C14 H16 I N2 O6 c1c(cc(c(c....
175 1XF2 - DT DT DT n/a n/a
176 2OMN - IPH C6 H6 O c1ccc(cc1)....
177 2YKL - NLD C17 H25 N3 O3 CCNC(=O)CC....
178 2YK1 Kd = 7.4 nM NCT C10 H14 N2 C[N@@]1CCC....
179 6DF1 - LEU PTR LEU n/a n/a
180 5ALB - TIQ C23 H28 F2 N6 O4 S CCCSc1nc(c....
181 5ALC - TIQ C23 H28 F2 N6 O4 S CCCSc1nc(c....
182 1NGP - NPA C8 H7 N O5 c1cc(c(cc1....
183 4ODV - GP1 Z9M n/a n/a
184 1KEG - DT 64T DT DT n/a n/a
185 1EHL - 5HT DT n/a n/a
186 1C1E - ENH C10 H5 Cl6 N O2 CN1C(=O)[C....
187 1CLY - FUC GAL NAG NON FUC n/a n/a
188 1CT8 Kd = 0.3 uM TAA C20 H21 Cl2 F3 N3 O8 P c1cc(ccc1C....
189 1CE1 - GLY THR SER SER PRO SER ALA ASP n/a n/a
190 6DW2 - HD4 C13 H26 N O13 P CC(=O)N[C@....
191 1T66 - FLU C20 H12 O5 c1ccc(c(c1....
192 3GHB - LYS GLY VAL ARG ILE GLY PRO GLY GLN ALA n/a n/a
193 2W65 - ALA CIR GLY LEU THR GLY ARG HYP GLY n/a n/a
194 5DYO - FLU C20 H12 O5 c1ccc(c(c1....
195 4UIN Kd = 24 nM QI9 C20 H24 N2 O2 COc1ccc2c(....
196 3V0W Kd = 32 nM PA1 GLC GLC GLC GM0 GLA GM0 GMH KDO KDO n/a n/a
197 3IFL - ASP ALA GLU PHE ARG HIS ASP n/a n/a
198 3IFO - ASP ALA GLU PHE ARG HIS ASP n/a n/a
199 2CGR Kd = 53 nM GAS C23 H20 N4 O2 c1ccc(cc1)....
200 1YNK - SC5 C18 H26 N4 O2 C[C@H](c1c....
201 1I7Z Kd = 0.4 uM COC C17 H21 N O4 C[N@]1[C@H....
202 2O5Z Kd = 110 mM ANO C19 H28 O2 C[C@]12CCC....
203 25C8 - GEP C19 H29 N2 O3 C[N+]1(CCC....
204 35C8 - NOX C18 H26 N2 O4 c1cc(ccc1C....
205 1FL3 Kd = 0.16 uM SPB C19 H19 N O3 c1ccc(cc1)....
206 3CFB - SPB C19 H19 N O3 c1ccc(cc1)....
207 1UB5 - SPB C19 H19 N O3 c1ccc(cc1)....
208 1IND Ka = 11000000000 M^-1 EOT C20 H28 N4 O9 S c1cc(ccc1C....
209 1ZEA Kd = 6 uM DVA DPR GLY DSN DGN DHI DTY DAS DSN n/a n/a
210 1MEX - RAC C18 H18 N2 O5 CN(C)C(=O)....
211 1UM5 - SS1 C8 H10 O C[C@@H](c1....
212 1UM4 - SH4 C17 H19 N O4 P C[C@@H](c1....
213 1VPO Kd = 0.00000145 M TES C19 H28 O2 C[C@]12CC[....
214 1C5C Kd = 110 nM TK4 C12 H11 N O7 S2 CC(=O)Nc1c....
215 2PCP Kd = 2 nM 1PC C17 H25 N c1ccc(cc1)....
216 1D6V Kd = 670 nM HOP C23 H27 N O4 c1ccc(cc1)....
217 1Q0Y Kd ~ 1 nM MOI C17 H19 N O3 C[N@]1CC[C....
218 6CDO - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
219 4YHK ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
220 4YHM ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
221 4YHO ic50 = 2.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
222 4YHI ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
223 3O6M Kd = 33 nM PRO LYS LEU GLU PRO TRP LYS HIS PRO n/a n/a
224 1IGJ Kd = 0.1 nM DGX C41 H64 O14 C[C@@H]1[C....
225 1UZ8 Kd = 10.75 uM MAG FUC GAL n/a n/a
226 4ODT - GP1 Z9M n/a n/a
227 1RUM - BEZ C7 H6 O2 c1ccc(cc1)....
228 1ND0 - DP4 C14 H23 N O Si C[N+]1(CCC....
229 3LEY - LEU LEU GLU LEU ASP LYS TRP ALA NH2 n/a n/a
230 1RUP - BEZ C7 H6 O2 c1ccc(cc1)....
231 1RU9 - BEZ C7 H6 O2 c1ccc(cc1)....
232 1RUL - BEZ C7 H6 O2 c1ccc(cc1)....
233 3LEX Kd = 6.44 nM LEU LEU GLU LEU ASP LYS TRP ALA NH2 n/a n/a
234 1RUK - BEZ C7 H6 O2 c1ccc(cc1)....
235 1NCW - BEZ C7 H6 O2 c1ccc(cc1)....
236 1RUA - BEZ C7 H6 O2 c1ccc(cc1)....
237 6BE4 - NAG NAG NAG NAG NAG n/a n/a
238 6BE3 - NAG C8 H15 N O6 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: HD4; Similar ligands found: 24
No: Ligand ECFP6 Tc MDL keys Tc
1 HD4 1 1
2 57S 0.732394 1
3 NG1 0.521739 0.946429
4 GN1 0.521739 0.946429
5 3YW 0.506849 0.767857
6 MAG 0.485294 0.724138
7 2F8 0.485294 0.724138
8 NAG NGA 0.461538 0.733333
9 NAG A2G 0.461538 0.733333
10 TNR 0.448718 0.762712
11 NGA GAL 0.432099 0.728814
12 NAG MAN 0.432099 0.775862
13 NAG GAL 0.43038 0.741379
14 GAL NAG 0.43038 0.741379
15 NAG MBG 0.425 0.716667
16 GYU 0.4125 0.71875
17 GAL NGA A2G 0.411765 0.733333
18 NDG NAG 0.407407 0.733333
19 CBS 0.407407 0.733333
20 NAG GDL 0.407407 0.733333
21 CBS CBS 0.407407 0.733333
22 ACE SER THR VAL GLY A2G 0.40625 0.741935
23 MBG A2G 0.402439 0.716667
24 A2G MBG 0.402439 0.716667
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6DWI; Ligand: HD4; Similar sites found with APoc: 25
This union binding pocket(no: 1) in the query (biounit: 6dwi.bio4) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 5XNC MTA 2.46914
2 4JB0 ENO 3.00429
3 4MO2 FAD 3.86266
4 1I8T FAD 4.29185
5 3H2B SAH 4.92611
6 2WSB NAD 4.93827
7 4IMG NGF 5.15021
8 5CJF 520 5.15021
9 5O9F NAD 5.5794
10 5O9F 9ON 5.5794
11 3HB5 NAP 5.5794
12 4ZUL UN1 6.17284
13 4C3Y FAD 6.43777
14 3IQE F42 7.29614
15 4MSG 2C6 7.40741
16 2GMH FAD 7.40741
17 5YAP 8S0 7.81893
18 5YAP NAI 7.81893
19 2NXW TPP 8.58369
20 5Z20 NAI 8.64198
21 3EYA FAD 9.01288
22 5TDF ADE 10.3004
23 4WW8 VD9 16.309
24 3BGD SAH 16.7382
25 3CY2 MB9 18.8841
Pocket No.: 2; Query (leader) PDB : 6DWI; Ligand: HD4; Similar sites found with APoc: 81
This union binding pocket(no: 2) in the query (biounit: 6dwi.bio6) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 5BQ5 ADP BEF None
2 5GWT NAD 2.14592
3 3FS8 ACO 2.46914
4 4DXD GDP 2.88066
5 2RHO GSP 3.00429
6 6F9Q NAD 3.00429
7 5UJ3 CE4 3.00429
8 4EUE NAI 3.00429
9 5ZW3 SAH 3.11111
10 5AE2 FAD 3.43348
11 2AG5 NAD 3.7037
12 2GN4 UD1 3.86266
13 2UUU PL3 3.86266
14 2UUU FAD 3.86266
15 2Q46 NAP 3.86266
16 1VL8 NAP 3.86266
17 3OID NDP 3.87597
18 4V15 PLP 4.11523
19 3LL5 ADP 4.41767
20 3LL5 IPE 4.41767
21 5WRI A3P 4.52675
22 1H2B NAJ 4.52675
23 3VRV YSD 5.15021
24 2BTO GTP 5.15021
25 3D3W NAP 5.34979
26 3DUW SAH 5.38117
27 6CI9 NAP 5.5794
28 4DR9 BB2 5.72917
29 5THQ NDP 5.88235
30 4D7E FAD 6.17284
31 2GKS ADP 6.17284
32 5NTP 98E 6.43777
33 4C3Y ANB 6.43777
34 1XXA ARG 6.58436
35 5J7X FAD 6.86695
36 2R75 01G 6.99588
37 4G5H UD7 7.29614
38 4G5H NAP 7.29614
39 5YSS NAD 7.29614
40 4O1M NAD 7.40741
41 3KIF GDL 7.54717
42 3OIG NAD 7.72532
43 3SUC ATP 7.72532
44 1E6E FAD 7.8125
45 5FFF NAP 8.15451
46 2VAR KDF 8.58369
47 2VAR KDG 8.58369
48 4FN4 NAD 8.64198
49 2QEN ADP 8.64198
50 5LXT GTP 9.01288
51 5LXT 7AK 9.01288
52 5LXT GDP 9.01288
53 4Q9N NAI 9.01288
54 3RYC GTP 9.01288
55 1D4D FAD 9.0535
56 5T0B SIA GAL NAG 9.0535
57 4YMH SAH 9.44206
58 2VAP GDP 9.46502
59 1Q9I FAD 9.87124
60 1Q9I TEO 9.87124
61 1PN0 IPH 9.87654
62 1ZBQ NAD 9.87654
63 5J62 FMN 9.95671
64 5EIB GTP 10.6509
65 5EYP GDP 10.6509
66 5EYP GTP 10.6509
67 3GLC R5P 10.7296
68 3LOO B4P 10.7296
69 4LNU GTP 11.5226
70 5U6C 7YS 11.588
71 3SJU NDP 11.9342
72 4FCW ADP 12.0172
73 5DJH AMP 12.4464
74 2ZXI FAD 13.1687
75 1VKJ A3P 13.7339
76 5OFI 9TQ 13.9344
77 5ITZ GTP 14.1732
78 1T3Q FAD 18.8841
79 3PVW QRX 19.3416
80 4RGQ 13P 19.7425
81 4RGQ NDP 19.7425
Pocket No.: 3; Query (leader) PDB : 6DWI; Ligand: HD4; Similar sites found with APoc: 61
This union binding pocket(no: 3) in the query (biounit: 6dwi.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 1SNY NAP 2.57511
2 2BRY FAD 2.88066
3 3CTY FAD 2.88066
4 3IHG FAD 3.00429
5 4RSE A6V 3.29218
6 5BVA FAD 3.43348
7 2F5Z FAD 3.43348
8 1F0X FAD 3.43348
9 1ZK7 FAD 3.86266
10 1WVC CTP 3.86266
11 4MO2 FDA 3.86266
12 1NAA 6FA 4.11523
13 5TUK FAD 4.11523
14 4H6U ACO 4.5
15 1RLZ NAD 4.52675
16 5JOX EDG 4.52675
17 2HKJ RDC 4.72103
18 2UXI G50 4.7619
19 4ZDC CO8 4.93827
20 3RNM FAD 5.17241
21 3DCM SAM 5.20833
22 1C0I BE2 5.34979
23 1C0I FAD 5.34979
24 4REP FAD 5.34979
25 3DLS ADP 5.34979
26 1BW9 NAD 5.5794
27 5GSN FAD 5.76132
28 1H5Q NAP 6.00858
29 2YFT DQR 6.17284
30 1GTE FAD 6.43777
31 4MOP 2H5 6.43777
32 1M21 PHE CSI LEU PHA 6.43777
33 2Z3Y F2N 6.58436
34 1PT2 SUC 6.86695
35 1HYH NAD 6.99588
36 2VSS ACO 6.99588
37 2VSU ACO 6.99588
38 1DUB CAA 7.29614
39 4Z24 FAD 8.23045
40 5TUF FAD 8.23045
41 2QA1 FAD 8.58369
42 5XHA FRU FRU 9.01288
43 5I39 FAD 9.01288
44 4BPS 3EB 9.0535
45 2WPW ACO 9.87124
46 4RPL 3UC 9.87654
47 4RPL FAD 9.87654
48 5TS5 FAD 9.87654
49 4IZC 1GZ 10.3004
50 2WZV FMN 11.1588
51 3CBG SAH 11.6379
52 5MBX SP5 11.9342
53 5MBX FAD 11.9342
54 4D42 W0I 12.7572
55 4D42 NAP 12.7572
56 1JQ5 NAD 13.1687
57 3GXZ BMA MAN MAN MAN 13.8614
58 1FIQ SAL 15.2263
59 1FIQ MTE 15.2263
60 3NRZ MTE 15.2263
61 5HA0 LTD 21.7949
Pocket No.: 4; Query (leader) PDB : 6DWI; Ligand: HD4; Similar sites found with APoc: 14
This union binding pocket(no: 4) in the query (biounit: 6dwi.bio5) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 5GWT SIN 2.14592
2 1RM0 D6P 2.46914
3 3OU2 SAH 2.75229
4 5JFL NAD 3.00429
5 1X1T NAD 3.29218
6 2Q2V NAD 3.43348
7 3O9L LPN 4.21687
8 2DKN NAI 4.93827
9 1LVK MNT BEF 5.34979
10 5G5G MCN 7.29614
11 5T2U NAP 8.64198
12 4QOS ADP 10.3004
13 5JBE GLC GLC GLC GLC GLC 12.3457
14 1JUV NDP 12.9534
APoc FAQ
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