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Receptor
PDB id Resolution Class Description Source Keywords
6DEF 2.26 Å EC: 3.-.-.- VPS1 GTPASE-BSE FUSION COMPLEXED WITH GMPPCP CHAETOMIUM THERMOPHILUM VPS1 VACUOLAR PROTEIN SORTING 1 DYNAMIN-RELATED PROTEIN DGTPASE GMPPCP ENDOSOME VACUOLE HYDROLASE
Ref.: STRUCTURES OF THE FUNGAL DYNAMIN-RELATED PROTEIN VP A UNIQUE, OPEN HELICAL ARCHITECTURE. J. CELL BIOL. V. 217 3608 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG D:1002;
B:1002;
C:1002;
A:1002;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GCP C:1001;
D:1001;
B:1001;
A:1001;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
521.208 C11 H18 N5 O13 P3 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6DEF 2.26 Å EC: 3.-.-.- VPS1 GTPASE-BSE FUSION COMPLEXED WITH GMPPCP CHAETOMIUM THERMOPHILUM VPS1 VACUOLAR PROTEIN SORTING 1 DYNAMIN-RELATED PROTEIN DGTPASE GMPPCP ENDOSOME VACUOLE HYDROLASE
Ref.: STRUCTURES OF THE FUNGAL DYNAMIN-RELATED PROTEIN VP A UNIQUE, OPEN HELICAL ARCHITECTURE. J. CELL BIOL. V. 217 3608 2018
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 6DEF - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
2 6DI7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 6DEF - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
2 6DI7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (10)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 3T34 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2X2F - GDP ALF n/a n/a
3 5D3Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 3ZYC - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
5 2X2E - GDP ALF n/a n/a
6 6DEF - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
7 6DI7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 4P4T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 4H1V - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 4H1U - FLC C6 H5 O7 C(C(=O)[O-....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GCP; Similar ligands found: 142
No: Ligand ECFP6 Tc MDL keys Tc
1 GCP 1 1
2 GP3 0.8375 0.948718
3 GDP 0.82716 0.973684
4 GNH 0.817073 0.961039
5 GP2 0.804878 0.987013
6 GTP 0.797619 0.973684
7 G1R 0.788235 0.961039
8 9GM 0.77907 0.948718
9 GNP 0.77907 0.948718
10 GSP 0.77907 0.925
11 G 0.765432 0.960526
12 5GP 0.765432 0.960526
13 G2P 0.758621 0.987013
14 GMV 0.755814 0.948718
15 G2R 0.736264 0.961538
16 Y9Z 0.715789 0.903614
17 GAV 0.703297 0.936709
18 G3A 0.701031 0.948718
19 GKE 0.697917 0.936709
20 GDC 0.697917 0.936709
21 GDD 0.697917 0.936709
22 ALF 5GP 0.696629 0.86747
23 G5P 0.693878 0.948718
24 GPG 0.691489 0.936709
25 GFB 0.690722 0.936709
26 GTG 0.690722 0.91358
27 GDR 0.690722 0.936709
28 GDP AF3 0.688172 0.86747
29 YGP 0.6875 0.879518
30 6CK 0.683673 0.91358
31 JB2 0.67 0.936709
32 GKD 0.67 0.936709
33 GDX 0.663366 0.948718
34 GPD 0.663366 0.925926
35 ALF GDP 0.652632 0.86747
36 GDP ALF 0.652632 0.86747
37 JB3 0.632075 0.925
38 GMP 0.62963 0.857143
39 NGD 0.626168 0.936709
40 G3D 0.610526 0.960526
41 2MD 0.609091 0.870588
42 G G 0.607843 0.924051
43 G4P 0.597938 0.960526
44 U2G 0.59633 0.91358
45 FEG 0.59633 0.880952
46 GDP 7MG 0.596154 0.888889
47 MGD 0.59292 0.870588
48 CAG 0.59292 0.860465
49 ZGP 0.590909 0.870588
50 0O2 0.59 0.960526
51 CG2 0.585586 0.91358
52 MD1 0.57265 0.892857
53 PGD 0.57265 0.902439
54 3GP 0.566667 0.922078
55 TPG 0.563025 0.842697
56 DBG 0.563025 0.925
57 FE9 0.550847 0.760417
58 ACP 0.548387 0.922078
59 GH3 0.54 0.973684
60 GCP G 0.538462 0.922078
61 A G 0.534483 0.911392
62 2GP 0.532609 0.935065
63 G4M 0.53125 0.860465
64 U A G G 0.529915 0.911392
65 GPX 0.529412 0.922078
66 DGI 0.525773 0.924051
67 G A A A 0.521368 0.9
68 IDP 0.520833 0.947368
69 DGT 0.52 0.924051
70 AKW 0.513043 0.869048
71 P1G 0.510417 0.873418
72 G1G 0.504132 0.902439
73 G1R G1R 0.5 0.901235
74 R5I 0.5 0.922078
75 BGO 0.5 0.901235
76 R7I 0.5 0.922078
77 PGD O 0.496 0.831461
78 G U 0.495726 0.878049
79 ACQ 0.494949 0.922078
80 P2G 0.489583 0.860759
81 GGM 0.487395 0.879518
82 MGP 0.485149 0.936709
83 6G0 0.480392 0.936709
84 6YZ 0.480392 0.922078
85 DGP 0.479167 0.911392
86 DG 0.479167 0.911392
87 GPC 0.47541 0.858824
88 G C 0.475 0.878049
89 4TC 0.470085 0.876543
90 IMP 0.46875 0.934211
91 GTA 0.464912 0.91358
92 G2Q 0.453704 0.961538
93 A2D 0.452632 0.871795
94 G G G C 0.452381 0.890244
95 G7M 0.44898 0.924051
96 AT4 0.44898 0.8625
97 APC G U 0.448 0.8875
98 SGP 0.444444 0.807229
99 BA3 0.443299 0.871795
100 G G G RPC 0.439024 0.853659
101 B4P 0.438776 0.871795
102 AP5 0.438776 0.871795
103 ADP 0.438776 0.896104
104 A G C C 0.4375 0.888889
105 ANP 0.436893 0.873418
106 G C C C 0.435115 0.901235
107 AN2 0.434343 0.884615
108 M33 0.43 0.860759
109 A12 0.428571 0.910256
110 AP2 0.428571 0.910256
111 A G U 0.427536 0.86747
112 35G 0.427184 0.909091
113 C2E 0.427184 0.897436
114 PCG 0.427184 0.909091
115 HEJ 0.425743 0.896104
116 ATP 0.425743 0.896104
117 5GP 5GP 0.423077 0.860759
118 G U34 0.422764 0.86747
119 AR6 0.421569 0.871795
120 AQP 0.421569 0.896104
121 5FA 0.421569 0.896104
122 APR 0.421569 0.871795
123 AGS 0.417476 0.851852
124 AD9 0.417476 0.873418
125 SAP 0.417476 0.851852
126 UP5 0.416667 0.851852
127 CA0 0.415842 0.873418
128 ATF 0.415094 0.8625
129 HFD 0.413462 0.851852
130 A G U U 0.412587 0.86747
131 A1R 0.409091 0.841463
132 01G 0.408696 0.880952
133 PRT 0.408696 0.934211
134 APC 0.407767 0.910256
135 DG DG 0.40708 0.86747
136 A4P 0.406504 0.848837
137 UCG 0.406015 0.888889
138 7DD 0.405941 0.883117
139 93A 0.405941 0.813953
140 6AD 0.40566 0.821429
141 ADX 0.401961 0.790698
142 AGO 0.401575 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6DEF; Ligand: GCP; Similar sites found with APoc: 669
This union binding pocket(no: 1) in the query (biounit: 6def.bio4) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 1PTR PRB None
2 3LN9 FLC None
3 1NU4 MLA None
4 2Z48 A2G 1.02302
5 2Z48 NGA 1.02302
6 4IEE AGS 1.27877
7 3DZD ADP 1.3587
8 2ZFI ADP 1.36612
9 5T96 79J 1.46199
10 2QZ4 ADP 1.52672
11 5TSH ADP 1.53453
12 5TSH ANP 1.53453
13 5W75 GDP 1.53453
14 1D2E GDP 1.53453
15 2CST MAE 1.53453
16 1Q20 PLO 1.67224
17 1Q20 A3P 1.67224
18 3QVV 3QV 1.69492
19 3QVV A3P 1.69492
20 5W3Y IHP 1.70455
21 1UPT GTP 1.75439
22 5LB3 ADP 1.79028
23 5XHA FRU 1.79028
24 4KBA 1QM 1.81269
25 1R4A GNP 1.81818
26 3S6X SIA GAL BGC 1.84615
27 5WRI A3P 1.875
28 5WRJ A3P 1.9802
29 1SVK ALF GDP 1.983
30 1T5C ADP 2.00573
31 4IDN GNP 2.04604
32 4ZG4 VO4 ADP 2.04604
33 2ZPA ADP 2.04604
34 5I34 GDP 2.04604
35 4PFO ADP 2.04604
36 3RC3 ANP 2.04604
37 5OD2 GLC 2.04604
38 2FB3 MET 2.05882
39 3QXC ATP 2.06612
40 4FRZ ADP 2.07254
41 3COB ADP 2.16802
42 5MEX PAP 2.17391
43 5MEX SZZ 2.17391
44 1OXV ANP 2.26629
45 2IS6 ADP 2.30179
46 1QF5 GDP 2.30179
47 1QF5 RPL 2.30179
48 2FSH ANP 2.30179
49 2XAU ADP 2.30179
50 1W5T ADP 2.30179
51 1W5T ANP 2.30179
52 5VLQ ANP 2.30179
53 2C9O ADP 2.30179
54 1NN5 ANP 2.32558
55 1NN5 2DT 2.32558
56 3ITJ CIT 2.36686
57 1IN4 ADP 2.39521
58 3TK1 GDP 2.42424
59 2JK0 ASP 2.46154
60 5ZB0 ADP 2.52525
61 5ZB0 TYD 2.52525
62 1TQ4 GDP 2.55754
63 5H7K GDP 2.55754
64 1OYY AGS 2.55754
65 6FAA ADP 2.55754
66 5H7J GCP 2.55754
67 1GQY ACP 2.55754
68 1YTM ATP 2.55754
69 5GVR LMR 2.5641
70 1NY5 ADP 2.58398
71 1U0J ADP 2.62172
72 1YXM ADE 2.64026
73 1SQK LAR 2.65252
74 4B1X LAB 2.65957
75 1RZM E4P 2.66272
76 3RWO GDP 2.7027
77 6ACS CIT 2.71318
78 2BEK ATP 2.72374
79 4MKG AP5 2.76498
80 4TL6 ANP 2.7668
81 3TMK T5A 2.77778
82 3BER AMP 2.81124
83 4ZKD GDP 2.8133
84 4A4Z ANP 2.8133
85 5AK0 8V1 2.8133
86 2BO4 FLC 2.8133
87 2ODE ALF GDP 2.83688
88 1M7G ADX 2.8436
89 1M7G AV2 2.8436
90 2VVG ADP 2.85714
91 4LHW GNP 2.87356
92 1ION ADP 2.88066
93 3BOS CDP 2.89256
94 2X7I CIT 2.92208
95 5EE5 GTP 2.92398
96 5ZZB LAB 2.94118
97 1YVD GNP 2.95858
98 2F9L GDP 3.01508
99 2OZE AGS 3.02013
100 3B7G ANP 3.04348
101 3EZ2 ADP 3.06905
102 5MZN ADP 3.06905
103 5JCP GDP ALF 3.06905
104 4XGU ADP 3.06905
105 2ZUX RAM 3.06905
106 5MVR ADP 3.08642
107 5G3Y ADP 3.09735
108 1D9I 00P 3.125
109 1OIV GDP 3.14136
110 5K5Z ANP 3.18471
111 3FKQ ATP 3.21716
112 5H68 AGS 3.23529
113 1YZN GNP 3.24324
114 2J0V GDP 3.30189
115 4NCN GTP 3.32481
116 5ZXD ATP 3.32481
117 1WDT GTP 3.32481
118 4DCT GDP 3.32481
119 1V8K ANP 3.32481
120 4C2C ALA ALA ALA 3.32481
121 5JCZ GDP 3.35196
122 3E70 GDP 3.35366
123 3BFX A3P 3.37838
124 2RGX AP5 3.39806
125 1OFH ADP 3.44828
126 1SVM ATP 3.44828
127 3IO3 ADP 3.44828
128 1F9V ADP 3.45821
129 5ZI9 FLC 3.46154
130 2FES 3SP 3.4749
131 1NZQ 162 3.4749
132 1OYT FSN 3.4749
133 2FEQ 34P 3.4749
134 1O0D 163 3.4749
135 1C4V IH2 3.4749
136 3VXE DPN PRO ARG 3.4749
137 2ANK N12 3.4749
138 1TMT DPN PRO ARG 3.4749
139 2ANM CDO 3.50195
140 3FWY ADP 3.50318
141 2UVO NDG 3.50877
142 2UVO NAG 3.50877
143 4Q1A 2XZ 3.57143
144 4Q1A UDP 3.57143
145 4KVA GTP 3.58056
146 3MGB PAP 3.58056
147 2FAH GDP 3.58056
148 5G41 AP5 3.58744
149 1OBD AMP 3.59477
150 1FNN ADP 3.59897
151 4WEI GLC GAL 3.61011
152 3QH2 3NM 3.61991
153 4NU0 AP5 3.68664
154 1ZIN AP5 3.68664
155 3ZQ6 ADP ALF 3.7037
156 2OBM ADP 3.7464
157 1JI0 ATP 3.75
158 1H5R THM 3.75427
159 4PX9 ADP 3.76712
160 4TMZ GSP 3.76812
161 2XT3 ADP 3.77907
162 5F5R ANP 3.78151
163 5IFS ADP 3.79747
164 2QQ0 ADP 3.80435
165 2QQ0 TMP 3.80435
166 2QQ0 ANP 3.80435
167 1F5N GNP 3.83632
168 3WXM GTP 3.83632
169 4R43 GDP 3.83632
170 5Y6N ADP 3.83632
171 2GK6 ADP 3.83632
172 1LVK MNT BEF 3.83632
173 4OHY ANP 3.83632
174 5OES ADP 3.83632
175 2WKQ GTP 3.91566
176 2FNA ADP 3.92157
177 3R7F CP 3.94737
178 2W58 ADP 3.9604
179 2CDN ADP 3.9801
180 2ZTS ADP 3.98406
181 1NST A3P 4
182 4WOP CTP 4
183 3DKP ADP 4.08163
184 4HSE ADP 4.09207
185 4Y4V DAL 4.09207
186 1X6V ADP 4.09207
187 1XKV ATP 4.09207
188 2VWT PYR 4.11985
189 4B47 GDP 4.13223
190 4KAX GTP 4.14201
191 1FP6 ADP 4.15225
192 3AB1 FAD 4.16667
193 1YRB GDP 4.19847
194 3ZS9 ADP ALF 4.23729
195 2WOJ ADP ALF 4.23729
196 6AU6 GDP 4.24403
197 1APZ ASP 4.25532
198 1X8J A3P 4.2735
199 3N5C GDP 4.32099
200 4IHQ ADP 4.34783
201 6C90 ADP 4.34783
202 4YJ1 ADP 4.34783
203 5KSZ GCP 4.34783
204 3SFV GDP 4.36047
205 1NJF ADP 4.4
206 1NJF AGS 4.4
207 2CHG ANP 4.42478
208 3BFV ADP 4.42804
209 4JLV ADP 4.46097
210 2EW1 GNP 4.47761
211 4U5X GNP 4.49438
212 1XMV ADP 4.49438
213 3LRE ADP 4.50704
214 1F6B GDP 4.54545
215 1AKY AP5 4.54545
216 3ZFD ANP 4.5584
217 1Y3A GDP 4.55927
218 1VKJ A3P 4.5614
219 1VHT BA3 4.58716
220 5HCN GCP 4.5977
221 3WYF GTP 4.60358
222 1DAR GDP 4.60358
223 5XDR ADP 4.60358
224 1BGV GLU 4.60358
225 1S3G AP5 4.60829
226 3Q9L ATP 4.61538
227 3FB4 AP5 4.62963
228 3BD9 A3P 4.64286
229 3QKT ANP 4.71976
230 1H74 ILE 4.72973
231 5Z21 OXM 4.7486
232 1BH2 GSP 4.7619
233 1UJ2 C5P 4.7619
234 2YOH WMJ 4.7619
235 1UJ2 ADP 4.7619
236 4GOX A3P 4.79233
237 5X40 ACP 4.79452
238 1H65 GDP 4.81482
239 5Z69 AGS 4.83871
240 4XDA RIB 4.85437
241 3P4X ADP 4.85933
242 1IWE IMP 4.85933
243 5GOE GDP 4.85933
244 4PJ3 ANP 4.85933
245 1K6M AGS 4.85933
246 2ZJ5 ADP 4.85933
247 1Q19 SSC 4.85933
248 1DAK DPU 4.91071
249 1DAK ADP 4.91071
250 5M04 GDP 5
251 5L3V GDP 5.01672
252 2CBZ ATP 5.06329
253 1HTW ADP 5.06329
254 5CK5 GDP 5.06329
255 3E3U NVC 5.07614
256 1S8F GDP 5.08475
257 1G3M PCQ 5.10204
258 1G3M A3P 5.10204
259 4ZDJ UTP 5.11509
260 1P9B GDP 5.11509
261 1G7S GDP 5.11509
262 5WGG SAM 5.11509
263 2ORV 4TA 5.12821
264 4PPF FLC 5.14286
265 3NKV GNP 5.14286
266 1T8U A3P 5.14706
267 2ZR9 DTP 5.15759
268 2O66 FLC 5.18518
269 5IRR GSP 5.19481
270 1BG2 ADP 5.23077
271 1Z08 GNP 5.29412
272 1G16 GDP 5.29412
273 1RRC ADP 5.31561
274 3DEF GDP 5.34351
275 4LX0 BEF GDP 5.37084
276 5BN3 ADP 5.37084
277 5WC2 ADP 5.37084
278 1CT9 GLN 5.37084
279 1NHX PEP 5.37084
280 4NE2 SH2 5.38922
281 4NE2 ADP 5.38922
282 5KDO GDP 5.40541
283 4YMU ATP 5.41667
284 3TNF GNP 5.46875
285 5U32 GDP 5.50847
286 3IVV ASP GLU VAL THR SER THR THR SER SER SER 5.51724
287 5H67 ATP 5.52764
288 5N69 ADP 5.52764
289 2QG6 NMN 5.52764
290 4MKF AP5 5.52995
291 1LVG ADP 5.55556
292 4DVE BTN 5.55556
293 3FVQ ATP 5.57103
294 4X8O AP5 5.60748
295 1Z83 AP5 5.61225
296 3FIU POP 5.62249
297 1KK1 GNP 5.6266
298 6B4K ANP 5.6266
299 1AQU A3P 5.72391
300 4U00 ADP 5.7377
301 2ZPT A3P 5.76271
302 4NTO 1PW 5.7971
303 1SQ5 ADP 5.84416
304 5SZH GNP 5.88235
305 3GJ8 GDP 5.88235
306 3GJ5 GDP 5.88235
307 3GJ4 GDP 5.88235
308 4IP7 FBP 5.88235
309 5HZ9 5M8 5.92593
310 4HI0 GDP 6.03015
311 5C9P FUC 6.03675
312 1FZQ GDP 6.07735
313 1CR1 TTP 6.08108
314 1B0U ATP 6.10687
315 3GJ7 GDP 6.12245
316 1CS4 GSP 6.13208
317 5LTJ ADP 6.13811
318 1IHU ADP 6.13811
319 1IHU AF3 6.13811
320 5VGR GDP 6.13811
321 3PCR GTP 6.16247
322 3VMF GTP 6.16622
323 5ZHO A2G GLA FUC 6.17284
324 1GOJ ADP 6.19718
325 4LPS GDP 6.19835
326 6H5E ANP 6.3745
327 1KGZ PRP 6.37681
328 1G7C 5GP 6.38298
329 6A20 ADP 6.39386
330 1MKY GDP 6.39386
331 3CV2 OXL 6.39386
332 1RYH GNP 6.40394
333 3QBT GNP 6.42857
334 4XTR ATP 6.45161
335 4XVU ATP 6.45161
336 4XTR ADP 6.45161
337 6BC0 GSP 6.48649
338 6BCB GSP 6.48649
339 3Q85 GNP 6.50888
340 3IUY AMP 6.57895
341 5O74 GDP 6.59898
342 1G6H ADP 6.61479
343 3Q72 GNP 6.62651
344 1R0X ATP 6.64336
345 5M7P ADP 6.64962
346 5I0H ADP BEF 6.64962
347 5EVY SAL 6.64962
348 1V6A TRE 6.64962
349 4XOI GTP 6.66667
350 5ZBR ANP 6.66667
351 1BHX R56 6.66667
352 1RIW OSC 6.66667
353 3IIJ ADP 6.66667
354 2GWH A3P 6.71141
355 2A5F GTP 6.73575
356 6BSX E7S 6.74157
357 6BSX GDP 6.74157
358 1E96 GTP 6.77083
359 1DS6 GDP 6.77083
360 1I4D GDP 6.77083
361 1JJV ATP 6.79612
362 3M1I GTP 6.80628
363 2RI1 GLP 6.80851
364 4GBM A3P 6.81115
365 4BQS ADP 6.81818
366 4BQS K2Q 6.81818
367 2WMO GTP 6.84211
368 5KUT GDP 6.87831
369 4WZ6 ATP 6.89655
370 2DPY ADP 6.90537
371 5FG3 GDP 6.90537
372 3VEH 0GA 6.90537
373 5IRN ADP 6.90537
374 3A4M ADP 6.92308
375 3SBD GNP 6.95187
376 1MH1 GNP 6.98925
377 5UPK GNP 7.02703
378 3AI8 HNQ 7.03125
379 4BAS GNP 7.03518
380 5UIV ADP 7.04846
381 1G4U GDP 7.06522
382 1XFF GLU 7.08333
383 2J5V PCA 7.08447
384 1PUJ GNP 7.0922
385 2KIN ADP 7.14286
386 1MR3 G3D 7.18232
387 1GUA GNP 7.18563
388 6C74 PC 7.20721
389 3GJ3 GDP 7.23982
390 1Z0F GDP 7.26257
391 2CJW GDP 7.29167
392 2FJU GSP 7.30337
393 1JJ7 ADP 7.30769
394 5EXT ADP 7.30769
395 2A5J GDP 7.32984
396 1HE1 GDP 7.38636
397 1HE1 AF3 7.38636
398 3H4S ADP 7.40741
399 3GJX GTP 7.40741
400 2X77 GDP 7.40741
401 2CE7 ADP 7.41688
402 1SKQ GDP 7.41688
403 2BCG GDP 7.41688
404 3CPJ GDP 7.41688
405 1ZD9 GDP 7.44681
406 3EWA ANP 7.45342
407 1ZJ6 G3D 7.48663
408 5W3X IHP 7.5
409 2JCB ADP 7.5
410 2O0J ADP 7.53247
411 2RCN GDP 7.5419
412 3DC4 ADP 7.55814
413 4QM7 GTP 7.60234
414 3AQ4 GDP 7.6087
415 3CH5 GDP 7.69231
416 2WQ4 SFU 7.69231
417 2OFW ADX 7.69231
418 4GDX GLU 7.69231
419 3KTA AP5 7.69231
420 1ZCB GDP 7.73481
421 1YZG GDP 7.82123
422 1OIX GDP 7.8534
423 3TKL GTP 7.86517
424 4QOS ADP 7.92453
425 4WZA ACP 7.92839
426 4WZA ADP 7.92839
427 4B2D SER 7.92839
428 1Z06 GNP 7.93651
429 6AIC AMP 7.94393
430 6BCA GSP 7.94702
431 2GCO GNP 7.9602
432 2GCN GDP 7.9602
433 2HT6 GDP 8.04598
434 1Z0A GDP 8.04598
435 2PL3 ADP 8.05085
436 4YLG GDP 8.09249
437 5J1S ATP 8.13008
438 2ZEJ GDP 8.15217
439 4V03 ADP 8.17121
440 3HY2 ATP 8.18182
441 3TBK ANP 8.18414
442 4IOK XPO 8.18414
443 4IOK ADP 8.18414
444 1Z6T ADP 8.18414
445 1KY3 GDP 8.24176
446 5ZZA LAB 8.26446
447 2MJP ANP 8.29016
448 1GWN GTP 8.29268
449 2OG2 MLI 8.35655
450 1X1R GDP 8.42697
451 2J59 GTP 8.43373
452 1O3Y GTP 8.43373
453 5OCG GNP 8.46561
454 5UQW GDP 8.46561
455 5BQ5 ADP BEF 8.46561
456 1RE0 GDP 8.53659
457 2BME GNP 8.60215
458 4D0N GDP 8.64865
459 1M2O GNP 8.69565
460 2QTV GNP 8.69565
461 1Y63 ADP 8.69565
462 5E5U MLI 8.71212
463 2PZE ATP 8.73362
464 4E03 ADP 8.73786
465 1XP8 AGS 8.74317
466 2FFQ GSP 8.77193
467 6B8B ADP 8.83534
468 3DOE GTP 8.85417
469 4RLT FSE 8.86076
470 2PEZ GGZ 8.93855
471 2PEZ DAT 8.93855
472 5KSP GDP 8.94737
473 4M9Q GNP 8.95141
474 4QRH 0O2 9.04762
475 3B5J 12D 9.0535
476 5DI9 GNP 9.09091
477 5DIF GNP 9.09091
478 5UWJ GNP 9.09091
479 5UWP GNP 9.09091
480 5UWT GNP 9.09091
481 5UWI GNP 9.09091
482 5UWH GNP 9.09091
483 5UWW GNP 9.09091
484 5UWO GNP 9.09091
485 6CIT GNP 9.09091
486 1WA5 GTP 9.09091
487 5UWR GNP 9.09091
488 5UWQ GNP 9.09091
489 4LJ9 ACP 9.14454
490 1KJ8 GAR 9.20716
491 4R98 GNH 9.22509
492 1M7B GTP 9.23913
493 2C5L GTP 9.24856
494 4HAT GNP 9.28571
495 5OEC GDP 9.28962
496 1Z0K GTP 9.30233
497 4K81 GTP 9.35672
498 1L2T ATP 9.3617
499 1EK0 GNP 9.41177
500 2AWN ADP 9.44882
501 3RLF ANP 9.44882
502 5VHC BEF ADP 9.46292
503 5O2T GSP 9.46746
504 4V0K GDP 9.46746
505 4KVG GTP 9.52381
506 3X1Z GNP 9.58084
507 4HDQ GNP 9.58084
508 4HDO GNP 9.58084
509 1KAO GDP 9.58084
510 1CLU DBG 9.63855
511 4YDS ATP 9.64912
512 2GKS ADP 9.71867
513 5FTB ANP 9.71867
514 5FHD ADP ALF 9.71867
515 2HF9 GSP 9.73451
516 3AB3 GDP 9.7561
517 1S9D GDP 9.85222
518 4ZNL BEF ADP 9.85401
519 1GXU 2HP 9.89011
520 3B9Q MLI 9.93377
521 4FCW ADP 9.96785
522 2C77 GNP 9.97442
523 2C78 GNP 9.97442
524 2NCD ADP 9.97442
525 4RD0 GDP 9.97442
526 4OI4 ATP 9.97442
527 2Y8E GNP 10.0559
528 1U8Z GDP 10.119
529 2XTZ GSP 10.1695
530 4LYA ATP 10.2302
531 5L3R GCP 10.2389
532 3DDC GNP 10.241
533 3PQC GDP 10.2564
534 2Z5F A3P 10.4027
535 1OS1 PYR 10.4859
536 2IYL GDP 10.5634
537 1YZQ GNP 10.5882
538 4D81 ADP 10.6007
539 3E5H GNP 10.6742
540 2A9K GDP 10.6952
541 4ODT GP1 Z9M 10.7477
542 5F1V 3VN 10.7744
543 1ZC3 GNP 10.8571
544 1UAD GNP 10.8571
545 3FYH ADP 10.8696
546 1G3Q ADP 10.9705
547 2I4I AMP 10.9974
548 1MFA GLA MMA ABE 11.0236
549 1D2N ANP 11.0294
550 5YEE LAB 11.0294
551 4ITR GDP 11.0759
552 4DID GDP 11.1842
553 3W5J GDP 11.2745
554 2W2X GSP 11.2903
555 3KJI ADP 11.4173
556 3LXR GDP 11.4583
557 4J0Q GDP 11.509
558 2W83 GTP 11.6883
559 5HR5 ADP 11.7647
560 3CNL GNP 11.8321
561 1KSH GDP 11.8421
562 3T5G GDP 11.8421
563 4RZ3 ADP 12.2034
564 4YS0 ADP 12.2762
565 1RVV INI 12.3377
566 5L3W GDP 12.4183
567 1Z2A GDP 12.5
568 2V7Q ADP 12.532
569 1W0J ADP BEF 12.532
570 2CK3 ADP 12.532
571 2CK3 ANP 12.532
572 1W0J ADP 12.532
573 2V7Q ATP 12.532
574 4TTQ ATP 12.5581
575 3T12 GDP ALF 12.6263
576 3T1O GDP 12.6263
577 5L3S GNP 12.8378
578 5L3S G 12.8378
579 1D5C GDP 12.963
580 1VG8 GNP 13.0435
581 1VG0 GDP 13.0435
582 4YC7 GNP 13.1234
583 5NM7 GLY 13.1579
584 2EFE GNH 13.2597
585 2BVN GNP 13.2992
586 5JBQ GDP 13.2992
587 4PC3 GDP 13.2992
588 3U6K GDP 13.2992
589 4G5G GDP 13.2992
590 4P3Y GDP 13.2992
591 3U6B GDP 13.2992
592 1D8T GDP 13.2992
593 2JLR ANP 13.2992
594 5DI3 GNP 13.308
595 1Z0J GTP 13.5593
596 5W7Q GDP 13.6729
597 1L6O SER LEU LYS LEU MET THR THR VAL 13.6842
598 5W76 GDP 13.7662
599 4DKX GDP 13.8889
600 6CRK GDP 14.0845
601 1BO4 COA 14.2857
602 3UIE ANP 14.5
603 1VG1 GDP 14.5946
604 1VG9 GDP 14.5946
605 1KO8 6PG 14.8571
606 3WYA GDP 14.977
607 3WY9 GDP 14.977
608 2Y65 ADP 15
609 2QN6 GDP 15.0538
610 3A1S GDP 15.1163
611 5LEF GTP 15.1515
612 6CS8 F9Y 15.1815
613 3CX8 GSP 15.2709
614 1R2Q GNP 15.2941
615 1RJ9 GCP 15.3333
616 5Z2M GTP 15.3409
617 4GOJ GNP 15.4167
618 2HCJ GDP 15.5224
619 4XSH GSP 15.5251
620 1EXF GLY 15.7025
621 4C4P GNP 15.8879
622 3MJH GTP 16.0714
623 1FQJ GDP 16.3265
624 1FQJ ALF 16.3265
625 5YSI NCA 16.4474
626 1B7T ADP 16.6667
627 1KK8 BEF ADP 16.8831
628 4CVN ADP 17.2775
629 3ZIA ATP 17.4603
630 3ZIA ADP 17.4603
631 1G41 ADP 17.5676
632 1NRJ GTP 17.7215
633 1J2J GTP 17.7778
634 5TB5 GDP 17.8378
635 5TAR GDP 17.8378
636 2HK9 ATR 18.1818
637 1F2U ATP 18.9189
638 5XKT GNP 19
639 2OM2 GDP 19.4444
640 5E95 GDP 19.6429
641 3KUD GDP 19.8795
642 2ZL4 ALA ALA ALA ALA 19.898
643 3NHB ADP 19.9346
644 4NON GDP 20
645 1ETS MID 20.4082
646 2VB6 ADP BEF 21.4765
647 1W7J ADP BEF 21.8543
648 2FH5 GTP 22.1622
649 2UZI GTP 23.0769
650 5J1J ANP 23.1579
651 4D0G GTP 23.1884
652 4ZI2 GNP 23.3083
653 3WYG GTP 23.6842
654 2WJG GDP 23.9362
655 5WDR GNP 23.9766
656 1TU3 GNP 24.0506
657 5HPY GDP 24.569
658 1XX6 ADP 24.6073
659 2WIC GNP 25.8427
660 2WJH GDP 27.1084
661 2WJH FLC 27.1084
662 2D7D ADP 27.5
663 4R2I ANP 27.619
664 5YT0 GDP 28.5714
665 5UWU GNP 30
666 2VOH CIT 30.7692
667 3QF7 ANP 32
668 3BC1 GNP 33.8983
669 5DHF GNP 36.8421
Pocket No.: 2; Query (leader) PDB : 6DEF; Ligand: GCP; Similar sites found with APoc: 25
This union binding pocket(no: 2) in the query (biounit: 6def.bio2) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 1PVS 7HP 1.06383
2 5W4W 9WG 1.81269
3 3FXU TSU 1.96721
4 2FB3 5AD 2.05882
5 1NJJ GET 2.55754
6 1E2K TMC 2.71903
7 5TH5 MET 3.04183
8 1NXJ GLV 3.27869
9 4GLW NMN 3.27869
10 4CP8 MLI 3.32481
11 2A2X NA9 3.4749
12 2CN0 F25 3.50195
13 1RTF BEN 3.57143
14 6MFL OPV 3.57143
15 4UZI IMD 4.09207
16 3K5I AIR 4.34783
17 1HSR BHO 4.94186
18 5EE7 5MV 5.37084
19 5E58 CPZ 5.88235
20 3UDG TMP 5.98007
21 5LTJ BEF 6.13811
22 4GQY AMP 6.66667
23 2CBO TH2 10.4348
24 3KP6 SAL 11.2583
25 4J6C STR 11.509
Pocket No.: 3; Query (leader) PDB : 6DEF; Ligand: GCP; Similar sites found with APoc: 21
This union binding pocket(no: 3) in the query (biounit: 6def.bio3) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 5EQ0 5R0 PHE ALA LEU ELY 5R5 None
2 5F7N NAG GAL FUC FUC A2G 2.04604
3 5BSH PRO 2.52708
4 3UZO PLP 2.7933
5 3H41 ALA DGL 2.89389
6 4XFR CIT 3.32481
7 4AX9 N5N 3.50195
8 2AJH MET 3.57143
9 1NFU RRP 3.93701
10 1BW9 NAD 4.77528
11 1NHX FTB 5.37084
12 5J6Y BGC 5.85106
13 5J6Y GLC 5.85106
14 5O0J GLC 5.88235
15 2FLI DX5 5.90909
16 1U3G ADP 6.34921
17 1G4U AF3 7.06522
18 5OKL PAM 7.16113
19 4UP4 GAL NAG 8.18414
20 3B6C SDN 8.54701
21 1LOJ URI 13.7931
Pocket No.: 4; Query (leader) PDB : 6DEF; Ligand: GCP; Similar sites found with APoc: 11
This union binding pocket(no: 4) in the query (biounit: 6def.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 6GAS FAD 1.20846
2 3LA3 2FT 1.23457
3 5TWB FAD 1.74419
4 1UH4 GLC GLC GLC GLC GLC 2.04604
5 2NVK NAP 2.55754
6 1SL3 170 3.13589
7 5H4S RAM 4.22535
8 1RL4 BL5 6.38298
9 3CYI ATP 8.18182
10 1I7M CG 8.98876
11 1TZD ADP 9.81818
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