Receptor
PDB id Resolution Class Description Source Keywords
6D3U 2.21 Å EC: 4.-.-.- COMPLEX STRUCTURE OF ULVAN LYASE FROM NONLABEN ULVANIVORANS- NONLABENS ULVANIVORANS COMPLEX STRUCTURE OF NLR48 LYASE
Ref.: STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PL28 ULVAN LYASE NLR48 FROMNONLABENS ULVANIVORANS. J. BIOL. CHEM. V. 293 11564 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA B:401;
A:401;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
40.078 Ca [Ca+2...
PO4 B:403;
A:403;
B:402;
A:402;
 Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
 submit data
94.971 O4 P [O-]P...
83Y BDP 83Y GCD D:1;
C:1;
 Valid;
Valid;
 none;
none;
 submit data
800.626 n/a S(=O)...
EDO B:408;
 Invalid;
 none;
 submit data
62.068 C2 H6 O2 C(CO)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6D3U 2.21 Å EC: 4.-.-.- COMPLEX STRUCTURE OF ULVAN LYASE FROM NONLABEN ULVANIVORANS- NONLABENS ULVANIVORANS COMPLEX STRUCTURE OF NLR48 LYASE
Ref.: STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PL28 ULVAN LYASE NLR48 FROMNONLABENS ULVANIVORANS. J. BIOL. CHEM. V. 293 11564 2018
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 6D3U - 83Y BDP 83Y GCD n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 59 families.
1 6D3U - 83Y BDP 83Y GCD n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 47 families.
1 6D3U - 83Y BDP 83Y GCD n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 83Y BDP 83Y GCD; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 83Y BDP 83Y GCD 1 1
2 GCU MAV MAW 0.588889 0.632653
3 MAV LGU MAV BEM 0.588889 0.632653
4 ASG BDP ASG GCD 0.504274 0.738462
5 LGU MAW 0.488889 0.612245
6 GTR RAM AQA 0.484848 0.632653
7 RAM GAD 0.461538 0.612245
8 ASG GCD 0.407407 0.71875
Similar Ligands (3D)
Ligand no: 1; Ligand: 83Y BDP 83Y GCD; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6D3U; Ligand: 83Y BDP 83Y GCD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6d3u.bio2) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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