Receptor
PDB id Resolution Class Description Source Keywords
6BE4 1.9 Å NON-ENZYME: IMMUNE CRYSTAL STRUCTURE OF A POLYSACCHARIDE-BINDING HUMAN FAB (F59 COMPLEX WITH NONA-N-ACETYL-D-GLUCOSAMINE (9NAC) HOMO SAPIENS IMMUNOGLOBULIN HUMAN ANTIBODY ANTIGEN BINDING FRAGMENT POACETYLGLUCOSAMINE OLIGOSACCHARIDE COMPLEX IMMUNE SYSTEM
Ref.: STRUCTURAL BASIS FOR ANTIBODY TARGETING OF THE BROA EXPRESSED MICROBIAL POLYSACCHARIDE POLY-N-ACETYLGLU J. BIOL. CHEM. V. 293 5079 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG NAG NAG NAG NAG H:301;
Valid;
none;
submit data
1033.98 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6BE3 1.6 Å NON-ENZYME: IMMUNE CRYSTAL STRUCTURE OF A POLYSACCHARIDE-BINDING HUMAN FAB (F59 COMPLEX WITH N-ACETYL-D-GLUCOSAMINE (GLCNAC) HOMO SAPIENS IMMUNOGLOBULIN HUMAN ANTIBODY ANTIGEN BINDING FRAGMENT N-GLUCOSAMINE COMPLEX IMMUNE SYSTEM
Ref.: STRUCTURAL BASIS FOR ANTIBODY TARGETING OF THE BROA EXPRESSED MICROBIAL POLYSACCHARIDE POLY-N-ACETYLGLU J. BIOL. CHEM. V. 293 5079 2018
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 208 families.
1 6BE4 - NAG NAG NAG NAG NAG n/a n/a
2 6BE3 - NAG C8 H15 N O6 CC(=O)N[C@....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 5EOR - ASP VAL GLN THR GLY ARG ARG PRO TYR GLU n/a n/a
2 3TV3 - AML MAN MAN MAN MAN MAN MAN MAN MAN n/a n/a
3 2YKL - NLD C17 H25 N3 O3 CCNC(=O)CC....
4 2YK1 Kd = 7.4 nM NCT C10 H14 N2 C[N@@]1CCC....
5 6BE4 - NAG NAG NAG NAG NAG n/a n/a
6 6BE3 - NAG C8 H15 N O6 CC(=O)N[C@....
50% Homology Family (238)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 42 families.
1 3HNT - AXR BXY BXY BXX n/a n/a
2 3HNV - AXR BXY BXY BXX n/a n/a
3 3HNS - AXR BXY BXY BXY BXX BXX n/a n/a
4 3QG6 ic50 = 0.73 nM TYR SER THR CYS TYR PHE ILE MET n/a n/a
5 3IF1 - NGA C8 H15 N O6 CC(=O)N[C@....
6 3IET Kd = 0.14 uM GLY THR LYS PRO PRO LEU GLU GLU LEU A2G n/a n/a
7 3PHQ - KDO C8 H14 O8 C1[C@H]([C....
8 2HRP - MET SER LEU PRO GLY ARG TRP LYS PRO LYS n/a n/a
9 5NBW - 8SK C20 H12 O c1ccc2c(c1....
10 6MSY - MAN MAN MAN MAN n/a n/a
11 3OAU - MAN MAN n/a n/a
12 6N35 - MAN C6 H12 O6 C([C@@H]1[....
13 6MUB - BMA MAN MAN MAN MAN n/a n/a
14 6MU3 - BMA MAN MAN MAN n/a n/a
15 3OAZ - 2M5 C8 H16 O6 C[C@@H]([C....
16 4RBP - KDO MAN MAN MAN MAN MAN n/a n/a
17 3OAY - BDF C6 H12 O6 C1[C@H]([C....
18 4OJF - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
19 4M7J Kd = 0.781 uM KDA KDO KDO n/a n/a
20 5D6C - 57S C13 H26 N O13 P CC(=O)N[C@....
21 6DWA - HD4 C13 H26 N O13 P CC(=O)N[C@....
22 2BMK Kd = 2.4 uM PDD C11 H17 N2 O7 P Cc1c(c(c(c....
23 1WC7 - PP3 C11 H17 N2 O7 P Cc1c(c(c(c....
24 1WCB Kd = 26 nM PE1 C14 H24 N3 O7 P Cc1c(c(c(c....
25 1MJ7 Kd = 4.5 nM HAL C23 H29 N2 O7 P c1ccc(cc1)....
26 1MH5 Kd = 0.61 nM HAL C23 H29 N2 O7 P c1ccc(cc1)....
27 1MFA Kd = 9.1 uM GLA MMA ABE n/a n/a
28 3I9G Kd = 1.1 nM S1P C18 H38 N O5 P CCCCCCCCCC....
29 1F4X Kd = 2.6 uM MGS C12 H23 N O7 C[C@@H]1[C....
30 1AJ7 Kd = 135 uM NPE C11 H13 N O7 P c1cc(ccc1[....
31 1GAF Kd = 10 nM NPE C11 H13 N O7 P c1cc(ccc1[....
32 3CFD - SPB C19 H19 N O3 c1ccc(cc1)....
33 4JN2 - C24 C27 H29 N7 O3 CCOC(=O)CC....
34 1U8M - GLU LEU ASP LYS TYR ALA SER n/a n/a
35 3IDG - ALA LEU ASP LYS TRP ASP n/a n/a
36 1TJG - GLU LEU ASP LYS TRP ALA SER n/a n/a
37 1U93 - GLU GLN ASP LYS TRP ALA SER n/a n/a
38 1U8H - ALA LEU ASP LYS TRP ALA SER n/a n/a
39 1U8Q - GLU LEU GLU LYS TRP ALA SER n/a n/a
40 3IDJ - GLU LEU ASP ORN TRP ALA SER n/a n/a
41 2F5B - GLU LEU ASP LYS TRP ALA SER n/a n/a
42 1U92 - GLU ALA ASP LYS TRP GLN SER n/a n/a
43 1U8I - GLU LEU ASP LYS TRP ALA ASN n/a n/a
44 1U95 - GLU LEU ASP HIS TRP ALA SER n/a n/a
45 1U8J - GLU LEU ASP LYS TRP ALA GLY n/a n/a
46 3IDI - ALA LEU ASP LYS TRP GLN ASN n/a n/a
47 3IDN - GLU LEU ASP HOX TRP ALA SER n/a n/a
48 1U91 - GLU ASN ASP LYS TRP ALA SER n/a n/a
49 3IDM - GLU LEU ASP NRG TRP ALA SER n/a n/a
50 1U8K - LEU GLU LEU ASP LYS TRP ALA SER LEU n/a n/a
51 2C1P - FNZ C18 H15 F N4 O c1cc(ccc1C....
52 2R2E - KDE C11 H18 O8 C=CCO[C@@]....
53 3SY0 - KDA KDO KDO n/a n/a
54 3OKL - KDA KDO n/a n/a
55 2R1Y Kd = 31 uM KDR KDO n/a n/a
56 2R2B - KDA KDO KDO n/a n/a
57 2G5B - PRO THR SER SER GLU GLN ILE n/a n/a
58 2R1X Kd = 16 uM KDD KDA n/a n/a
59 3OKK - KDA KDO n/a n/a
60 3OKE - KO2 C11 H18 O9 C=CCO[C@@]....
61 3OKN - KDO KDO KDA n/a n/a
62 3HZM Kd = 0.00000145 M KDO C8 H14 O8 C1[C@H]([C....
63 2R23 Kd = 190 uM KO1 KDA n/a n/a
64 1Q9W - KDO KDO KDO n/a n/a
65 3T65 - KDA KDO n/a n/a
66 2R1W Kd = 25 uM KDB KDA n/a n/a
67 3OKO - KDA KDO KDO n/a n/a
68 3HZV - KDA KDO KDO n/a n/a
69 3T4Y - KDO C8 H14 O8 C1[C@H]([C....
70 3OKD - KDO C8 H14 O8 C1[C@H]([C....
71 3T77 - KDA KDO n/a n/a
72 3HZY Kd = 10 uM KDA KDO KDO n/a n/a
73 3HZK Kd = 30 uM KDA KDO n/a n/a
74 2R2H - KO2 C11 H18 O9 C=CCO[C@@]....
75 3BPC Kd = 16 uM KDB KDA n/a n/a
76 4HGW Kd = 0.00000145 M KTU KDO n/a n/a
77 5XQW Kd = 1.6 nM 8EU C9 H12 N O5 P CCP(=O)(O)....
78 5TKJ - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
79 6CDP - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
80 6CDM - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
81 1Y0L Kd ~ 1 nM HAN C14 H19 N3 O2 Cc1cc2c(cc....
82 1E4W Kd = 25 nM SER HIS PHE ASN GLU TYR GLU n/a n/a
83 3V52 - GLU PRO GLN ALA PRO TRP MET GLU n/a n/a
84 3UYR - GLU PRO GLN ALA PRO TRP MET GLU n/a n/a
85 3V4U - GLU PRO GLN ALA PRO TRP MET GLU GLN n/a n/a
86 3UO1 - GLU PRO GLN ALA PRO TRP MET GLU GLN n/a n/a
87 1F3D - TPM C12 H18 N3 c1cc(ccc1C....
88 2OK0 Kd = 0.2 nM DT DC n/a n/a
89 1MRF - DI C10 H13 N4 O7 P c1nc2c(n1[....
90 1MRD - IDP C10 H14 N4 O11 P2 c1nc2c(n1[....
91 1MRE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
92 5MY4 - PCA PHE ARG HIS ASP SER GLY TYR GLU VAL n/a n/a
93 3FO0 - BZH C12 H14 N4 O3 c1cc2c(cc1....
94 3FO2 - BZH C12 H14 N4 O3 c1cc2c(cc1....
95 3FO1 - BZH C12 H14 N4 O3 c1cc2c(cc1....
96 5DTF - 5CT C10 H23 N3 O3 C(CCNC[C@H....
97 5MYO - PCA PHE ARG HIS ASP SER GLY TYR GLU VAL n/a n/a
98 1QYG - BCG C16 H19 N O4 C[N@]1[C@H....
99 1RIV - OBE C16 H19 N O5 C[N@H+]1[C....
100 1Q72 Kd = 0.00000145 M COC C17 H21 N O4 C[N@]1[C@H....
101 1RIU - RBE C15 H17 N O4 c1ccc(cc1)....
102 3FN0 Kd ~ 40 uM TRP ASN TRP PHE ASP ILE THR ASN LYS n/a n/a
103 1S3K Kd = 0.24 uM FUC GAL NDG FUC n/a n/a
104 3EYV - FUC GAL NDG FUC n/a n/a
105 5I8C - ALA VAL GLY ILE GLY ALA VAL PHE LEU n/a n/a
106 2AJX - TGN C16 H22 N O5 P C[N@]1[C@H....
107 2AJZ - ECG C10 H17 N O3 C[N@]1[C@H....
108 2AK1 - BEZ C7 H6 O2 c1ccc(cc1)....
109 2AJV - COC C17 H21 N O4 C[N@]1[C@H....
110 2AJY - ECG C10 H17 N O3 C[N@]1[C@H....
111 5VH4 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
112 1A4K Kd = 0.01 uM FRA C21 H23 N3 O7 CC(=O)Nc1c....
113 6DZN - AE3 C6 H14 O3 CCOCCOCCO
114 3IJH Kd = 100 uM KO2 C11 H18 O9 C=CCO[C@@]....
115 1YEE - PNB C13 H17 N2 O8 P c1cc(ccc1C....
116 1KN4 - PDE C13 H17 N2 O8 P C[C@@H](C(....
117 1YEG - BPN C7 H7 N O3 c1cc(ccc1C....
118 1YEK - NPO C6 H5 N O3 c1cc(ccc1[....
119 1YEI Kd = 35 nM PGG C12 H15 N2 O8 P c1cc(ccc1[....
120 1YEC - PNB C13 H17 N2 O8 P c1cc(ccc1C....
121 1YEJ Kd = 35 nM PNF C16 H23 N2 O8 P c1cc(ccc1[....
122 1YEF - PNC C14 H17 N3 O6 c1cc(ccc1C....
123 1KN2 - PNE C13 H17 N2 O8 P CC(C(=O)O)....
124 4OCX Kd = 3.6 pM MT1 C20 H23 N8 O5 CN(Cc1cnc2....
125 4S1D - 41M C16 H29 N5 O3 S C1[C@H]2[C....
126 1FLR Kd = 0.1 nM FLU C20 H12 O5 c1ccc(c(c1....
127 5EOR - ASP VAL GLN THR GLY ARG ARG PRO TYR GLU n/a n/a
128 5JOP - GAL BGC NAG GAL n/a n/a
129 3QCU - NKN C17 H35 O7 P CCCCCCCCCC....
130 4ONF - ASP ALA GLU PHE ARG HIS ASP n/a n/a
131 1KEL Kd = 52 nM AAH C13 H19 N2 O7 P c1cc(ccc1C....
132 1JGU - HBC C20 H21 N O c1ccc(cc1)....
133 2DDQ - HRB C17 H27 N3 O5 CCCCC[C@@H....
134 2DQU Ki = 50 nM CPD C28 H36 Cl2 F3 N6 O8 P CCNC(=O)N(....
135 2DQT Ki = 50 nM CPD C28 H36 Cl2 F3 N6 O8 P CCNC(=O)N(....
136 1JGL Kd = 2 nM EST C18 H24 O2 C[C@]12CC[....
137 1A0Q Ki = 27 nM HEP C15 H22 N O6 P CCCC[C@H](....
138 2Z93 Kd = 11.1 nM END C17 H24 O7 C1C=CCO[C@....
139 2Z92 Kd = 66.7 nM ENE C22 H30 O8 C1C=CCO[C@....
140 2R0W - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
141 5EOQ - LYS ARG GLU ALA ILE VAL LYS ALA ASP GLU n/a n/a
142 3EYS Kd = 3000 nM PCA PHE ARG HIS ASP SER n/a n/a
143 2IPU - ASP ALA GLU PHE ARG HIS ASP SER n/a n/a
144 2R0Z Kd = 3400 nM ALA LYS PHE ARG HIS ASP n/a n/a
145 6EV2 - BGC C6 H12 O6 C([C@@H]1[....
146 4YHY - M3L C9 H21 N2 O2 C[N+](C)(C....
147 3TV3 - AML MAN MAN MAN MAN MAN MAN MAN MAN n/a n/a
148 3TWC - AML MAN MAN MAN MAN MAN MAN MAN MAN n/a n/a
149 6B3D - MAN MAN MAN MAN MAN MAN MAN n/a n/a
150 2V17 - THR ASP HIS GLY ALA GLU n/a n/a
151 1EAP - HEP C15 H22 N O6 P CCCC[C@H](....
152 5T78 Kd = 43 nM NGA ALA PRO ASP THR ARG PRO ALA PRO n/a n/a
153 5T6P Kd = 880 nM ALA PRO ASP THR ARG PRO ALA PRO n/a n/a
154 4TUO - SIA GAL SIA GLC NGA n/a n/a
155 1DL7 Kd = 0.32 uM NCH C11 H18 N2 O6 P C[N+](C)(C....
156 2HKF - LEU PRO GLY GLU GLU ASP LEU PRO GLY n/a n/a
157 1MFE - GLA MAN ABE n/a n/a
158 1MFB - GLA MAN RAM RAM ABE MAN GLA n/a n/a
159 1MFD Kd = 4.9 uM GLA MMA ABE n/a n/a
160 1MFC - GLA MAN RAM ABE n/a n/a
161 1LO3 - AN1 C18 H16 O2 Cc1c2ccccc....
162 1LO0 - BC1 C19 H17 N3 O3 CN1c2ccccc....
163 1LO2 - OX1 C18 H16 O4 CC12c3cccc....
164 3BZ4 - EAG RAM RAM GLC RAM NAG RAM RAM GLC RAM n/a n/a
165 3C6S - RAM RAM RAM GLC NAG RAM RAM RAM GLC NAG RAM n/a n/a
166 6DWI - HD4 C13 H26 N O13 P CC(=O)N[C@....
167 1M7D Ka = 1700000 M^-1 RAM RAE MAG n/a n/a
168 1M7I Ka = 250000 M^-1 RAM RAM RAM NAG RAO n/a n/a
169 1PZ5 Kd = 4 uM MET ASP TRP ASN MET HIS ALA ALA n/a n/a
170 5TKK - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
171 2BJM Ka < 100000 M^-1 ANF C14 H10 O c1ccc2c(c1....
172 1A6V - NPC C14 H17 N2 O6 c1cc(c(cc1....
173 1OAU Kd = 20 nM DNF SER n/a n/a
174 1A6W - NIP C14 H16 I N2 O6 c1c(cc(c(c....
175 1XF2 - DT DT DT n/a n/a
176 2OMN - IPH C6 H6 O c1ccc(cc1)....
177 2YKL - NLD C17 H25 N3 O3 CCNC(=O)CC....
178 2YK1 Kd = 7.4 nM NCT C10 H14 N2 C[N@@]1CCC....
179 6DF1 - LEU PTR LEU n/a n/a
180 5ALB - TIQ C23 H28 F2 N6 O4 S CCCSc1nc(c....
181 5ALC - TIQ C23 H28 F2 N6 O4 S CCCSc1nc(c....
182 1NGP - NPA C8 H7 N O5 c1cc(c(cc1....
183 4ODV - GP1 Z9M n/a n/a
184 1KEG - DT 64T DT DT n/a n/a
185 1EHL - 5HT DT n/a n/a
186 1C1E - ENH C10 H5 Cl6 N O2 CN1C(=O)[C....
187 1CLY - FUC GAL NAG NON FUC n/a n/a
188 1CT8 Kd = 0.3 uM TAA C20 H21 Cl2 F3 N3 O8 P c1cc(ccc1C....
189 1CE1 - GLY THR SER SER PRO SER ALA ASP n/a n/a
190 6DW2 - HD4 C13 H26 N O13 P CC(=O)N[C@....
191 1T66 - FLU C20 H12 O5 c1ccc(c(c1....
192 3GHB - LYS GLY VAL ARG ILE GLY PRO GLY GLN ALA n/a n/a
193 2W65 - ALA CIR GLY LEU THR GLY ARG HYP GLY n/a n/a
194 5DYO - FLU C20 H12 O5 c1ccc(c(c1....
195 4UIN Kd = 24 nM QI9 C20 H24 N2 O2 COc1ccc2c(....
196 3V0W Kd = 32 nM PA1 GLC GLC GLC GM0 GLA GM0 GMH KDO KDO n/a n/a
197 3IFL - ASP ALA GLU PHE ARG HIS ASP n/a n/a
198 3IFO - ASP ALA GLU PHE ARG HIS ASP n/a n/a
199 2CGR Kd = 53 nM GAS C23 H20 N4 O2 c1ccc(cc1)....
200 1YNK - SC5 C18 H26 N4 O2 C[C@H](c1c....
201 1I7Z Kd = 0.4 uM COC C17 H21 N O4 C[N@]1[C@H....
202 2O5Z Kd = 110 mM ANO C19 H28 O2 C[C@]12CCC....
203 25C8 - GEP C19 H29 N2 O3 C[N+]1(CCC....
204 35C8 - NOX C18 H26 N2 O4 c1cc(ccc1C....
205 1FL3 Kd = 0.16 uM SPB C19 H19 N O3 c1ccc(cc1)....
206 3CFB - SPB C19 H19 N O3 c1ccc(cc1)....
207 1UB5 - SPB C19 H19 N O3 c1ccc(cc1)....
208 1IND Ka = 11000000000 M^-1 EOT C20 H28 N4 O9 S c1cc(ccc1C....
209 1ZEA Kd = 6 uM DVA DPR GLY DSN DGN DHI DTY DAS DSN n/a n/a
210 1MEX - RAC C18 H18 N2 O5 CN(C)C(=O)....
211 1UM5 - SS1 C8 H10 O C[C@@H](c1....
212 1UM4 - SH4 C17 H19 N O4 P C[C@@H](c1....
213 1VPO Kd = 0.00000145 M TES C19 H28 O2 C[C@]12CC[....
214 1C5C Kd = 110 nM TK4 C12 H11 N O7 S2 CC(=O)Nc1c....
215 2PCP Kd = 2 nM 1PC C17 H25 N c1ccc(cc1)....
216 1D6V Kd = 670 nM HOP C23 H27 N O4 c1ccc(cc1)....
217 1Q0Y Kd ~ 1 nM MOI C17 H19 N O3 C[N@]1CC[C....
218 6CDO - ALA VAL GLY ILE GLY ALA VAL PHE n/a n/a
219 4YHK ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
220 4YHM ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
221 4YHO ic50 = 2.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
222 4YHI ic50 = 4.6 nM 4CC C25 H25 N7 O3 [H]/N=C(c1....
223 3O6M Kd = 33 nM PRO LYS LEU GLU PRO TRP LYS HIS PRO n/a n/a
224 1IGJ Kd = 0.1 nM DGX C41 H64 O14 C[C@@H]1[C....
225 1UZ8 Kd = 10.75 uM MAG FUC GAL n/a n/a
226 4ODT - GP1 Z9M n/a n/a
227 1RUM - BEZ C7 H6 O2 c1ccc(cc1)....
228 1ND0 - DP4 C14 H23 N O Si C[N+]1(CCC....
229 3LEY - LEU LEU GLU LEU ASP LYS TRP ALA NH2 n/a n/a
230 1RUP - BEZ C7 H6 O2 c1ccc(cc1)....
231 1RU9 - BEZ C7 H6 O2 c1ccc(cc1)....
232 1RUL - BEZ C7 H6 O2 c1ccc(cc1)....
233 3LEX Kd = 6.44 nM LEU LEU GLU LEU ASP LYS TRP ALA NH2 n/a n/a
234 1RUK - BEZ C7 H6 O2 c1ccc(cc1)....
235 1NCW - BEZ C7 H6 O2 c1ccc(cc1)....
236 1RUA - BEZ C7 H6 O2 c1ccc(cc1)....
237 6BE4 - NAG NAG NAG NAG NAG n/a n/a
238 6BE3 - NAG C8 H15 N O6 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAG NAG NAG NAG NAG; Similar ligands found: 188
No: Ligand ECFP6 Tc MDL keys Tc
1 NDG NAG NAG 1 1
2 CTO 1 1
3 NAG NAG NAG NAG NAG NAG 1 1
4 NAG NAG NDG 1 1
5 NAG NAG NAG NAG NAG NAG NAG NAG 1 1
6 NDG NAG NAG NAG 1 1
7 NAG NAG NAG NAG NDG 1 1
8 NAG NAG NAG NDG 1 1
9 NDG NAG NAG NDG 1 1
10 NAG NAG NDG NAG 1 1
11 NAG NAG NAG NAG NAG 1 1
12 NAG GDL 0.929825 0.979592
13 NDG NAG 0.929825 0.979592
14 CBS 0.929825 0.979592
15 CBS CBS 0.929825 0.979592
16 NAG GAL NAG 0.753623 0.979592
17 TCG 0.742857 0.844828
18 NAG GAL GAL NAG 0.69863 0.979592
19 GAL NAG GAL NAG GAL NAG 0.69863 1
20 SN5 SN5 0.681818 0.811321
21 NAG NAG NAG NAG 0.680556 0.924528
22 NAG NAG NAG 0.680556 0.924528
23 NLC 0.671875 0.918367
24 NDG GAL 0.671875 0.918367
25 GAL NDG 0.671875 0.918367
26 NAG BMA NAG MAN MAN NAG NAG 0.655172 1
27 NGA GAL BGC 0.647887 0.918367
28 FUC GAL NAG A2G 0.641975 1
29 A2G GAL NAG FUC 0.641975 1
30 MBG A2G 0.632353 0.92
31 A2G MBG 0.632353 0.92
32 NOJ NAG NAG NAG 0.623377 0.875
33 Z4S NAG NAG 0.623377 0.924528
34 NOJ NAG NAG 0.623377 0.857143
35 NAG NAG BMA MAN MAN NAG GAL NAG 0.619565 1
36 NAG A2G 0.617647 0.979592
37 NAG NGA 0.617647 0.979592
38 NAG NAG BMA MAN MAN 0.611765 0.979592
39 NAG MAN BMA NDG MAN NAG GAL 0.608696 1
40 NAG GAL 0.602941 0.918367
41 GAL NAG 0.602941 0.918367
42 NAG NAG NGT 0.6 0.830508
43 GAL NAG MAN 0.594595 0.918367
44 DLD 0.589744 0.813559
45 MAN BMA NAG 0.589041 0.918367
46 GLA GAL NAG 0.589041 0.918367
47 NAG NDG 0.583333 0.886792
48 NAG NAG 0.583333 0.886792
49 NAG FUC 0.57971 0.897959
50 NAG AMU NAG AMV 0.578313 0.960784
51 NAG GAL BGC 0.571429 0.918367
52 DR2 0.565789 0.938776
53 FUC GAL NDG 0.565789 0.938776
54 NDG GAL FUC 0.565789 0.938776
55 FUC GAL NAG 0.565789 0.938776
56 FUL GAL NAG 0.565789 0.938776
57 NAG GAL FUC 0.565789 0.938776
58 GAL NAG FUC 0.565789 0.938776
59 LAT NAG GAL 0.5625 0.918367
60 GLC GAL NAG GAL 0.5625 0.918367
61 6Y2 0.560976 0.765625
62 NAA NAA AMI 0.55814 0.753846
63 AO3 0.55814 0.753846
64 NAG MUB 0.556962 0.98
65 NAG AMU 0.556962 0.98
66 NAG NDG BMA 0.556962 0.90566
67 NAG NAG BMA 0.556962 0.90566
68 NGA GAL 0.555556 0.862745
69 NGA GLA GAL BGC 0.555556 0.918367
70 NAG MAN MAN MAN NAG GAL NAG GAL 0.554348 1
71 MAN BMA NAG NAG MAN NAG GAL GAL 0.554348 1
72 NAG MAN BMA 0.552632 0.918367
73 NAG GAL GAL NAG GAL 0.55 0.979592
74 NAG MBG 0.549296 0.92
75 GAL NGA A2G 0.546667 0.979592
76 G6S NAG 0.545455 0.707692
77 GAL NAG GAL 0.544304 0.882353
78 M5G 0.536082 0.979592
79 UMG 0.533333 0.875
80 NAG MAN BMA MAN NAG GAL 0.526882 0.979592
81 NAG NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.525253 0.979592
82 NAG MAN MAN 0.525 0.918367
83 NGT NAG 0.525 0.813559
84 3QL 0.519481 0.90566
85 NGA GAL FUC 0.518987 0.938776
86 FUC GAL A2G 0.518987 0.938776
87 A2G GLA FUC 0.518987 0.938776
88 FUC GLA A2G 0.518987 0.938776
89 A2G GAL FUC 0.518987 0.938776
90 NAG NAG BMA MAN NAG 0.515789 0.924528
91 2F8 0.515625 0.86
92 MAG 0.515625 0.86
93 NAG MAN 0.513514 0.959184
94 HS2 0.512821 0.882353
95 MAN MAN NAG 0.5125 0.882353
96 GUM 0.511111 0.875
97 NGA 0.508197 0.816327
98 HSQ 0.508197 0.816327
99 A2G 0.508197 0.816327
100 BM3 0.508197 0.816327
101 NDG 0.508197 0.816327
102 NAG 0.508197 0.816327
103 NAG MAN MMA 0.506329 0.92
104 GAL BGC NAG GAL 0.506173 0.918367
105 GAL NAG GAL BGC 0.505882 0.882353
106 KPM 0.505747 0.923077
107 NAG GCU NAG GCD 0.505155 0.907407
108 GCS GCS NAG 0.5 0.884615
109 NAG MAN MAN MAN NAG 0.5 0.979592
110 UNU GAL NAG 0.5 0.96
111 NAG NAG BMA MAN 0.5 0.90566
112 A2G GAL BGC FUC 0.494382 0.938776
113 NAG NM9 0.493827 0.960784
114 BMA Z4Y NAG 0.488372 0.9
115 NAG NAG BMA BMA 0.488372 0.907407
116 GN1 0.485294 0.758621
117 NG1 0.485294 0.758621
118 FUC GAL NAG A2G FUC 0.483516 1
119 NAG GAL FUC FUC A2G 0.483516 1
120 AH0 NAG 0.481928 0.907407
121 NAG NAG BMA MAN MAN NAG NAG 0.480392 0.924528
122 ASG 0.478261 0.646154
123 FUC BGC GAL NAG GAL 0.473118 0.938776
124 NAG BMA MAN MAN MAN MAN 0.472527 0.918367
125 FUC BGC GAL NAG 0.47191 0.938776
126 NDG BDP BDP NPO NDG 0.47 0.765625
127 NA1 NAA AMI 0.46875 0.742424
128 GLC FUC GAL FUC A2G 0.466667 0.959184
129 NAG BDP NAG BDP NAG BDP NAG 0.466667 0.98
130 BGC FUC GAL FUC A2G 0.466667 0.959184
131 8VZ 0.465753 0.96
132 JXD 0.464646 0.720588
133 FUC C4W NAG BMA 0.457447 0.942308
134 MMA MAN NAG MAN NAG NAG 0.455556 0.98
135 SN5 SN5 NGT 0.454545 0.733333
136 GYU 0.453333 0.807018
137 FUC C4W NAG BMA MAN NAG 0.45283 0.942308
138 3YW 0.452055 0.84
139 BEK GAL NAG 0.451613 0.859649
140 NAG AMU ALA DGL 0.45 0.907407
141 NAG A2G GAL 0.447059 0.979592
142 GAL NGA 0.445946 0.918367
143 GAL A2G 0.445946 0.918367
144 A2G GAL 0.445946 0.918367
145 NAG MU2 0.445545 0.890909
146 BMA NAG MAN MAN MAN MAN MAN MAN MAN 0.443299 0.918367
147 NAG AH0 0.438202 0.907407
148 LEC NGA 0.438202 0.765625
149 MA8 0.435897 0.814815
150 TNR 0.434211 0.865385
151 ASN NAG NAG BMA MAN MAN NAG NAG 0.432432 0.890909
152 GLC GAL NAG GAL FUC A2G 0.431373 1
153 A2G GAL NAG FUC GAL GLC 0.431373 1
154 BGC GAL NAG GAL 0.430233 0.918367
155 GAL NAG GAL GLC 0.430233 0.918367
156 GAL NGA GLA BGC GAL 0.426966 0.918367
157 BGA 0.425532 0.824561
158 FUC C4W NAG BMA MAN MAN NAG NAG 0.424779 0.942308
159 FHY 0.423913 0.924528
160 GAL NDG FUC 0.421687 0.938776
161 FUC NDG GAL 0.421687 0.938776
162 SIA GAL NGA 0.421569 0.942308
163 4U2 0.42 0.960784
164 3PV 0.419355 0.867925
165 BCW 0.418605 0.959184
166 GAL NAG FUC FUC 0.418605 0.959184
167 FUC NAG GAL FUC 0.418605 0.959184
168 FUC NDG GAL FUC 0.418605 0.959184
169 BDZ 0.418605 0.959184
170 GAL NDG FUC FUC 0.418605 0.959184
171 FUC GAL NDG FUC 0.418605 0.959184
172 FUC GAL NAG FUC 0.418605 0.959184
173 FUC C4W NAG BMA MAN 0.417476 0.942308
174 4U1 0.417476 0.942308
175 NAG GAL SIA 0.417476 0.924528
176 FUC C4W NAG BMA MAN MAN NAG 0.417391 0.942308
177 WZ5 0.416667 0.92
178 NAG GDL PHJ 0.414141 0.803279
179 NAG SIA GAL 0.411765 0.942308
180 GYT 0.409639 0.830508
181 SNG 0.405797 0.788462
182 NAG NAG BMA MAN MAN MAN MAN 0.40367 0.90566
183 6ZC 0.402439 0.71875
184 LEC 0.402439 0.71875
185 SN5 NGT 0.402299 0.733333
186 GAL BGC SIA NGA 0.401786 0.942308
187 BGC GAL SIA NGA 0.401786 0.942308
188 SIA GAL BGC NGA 0.401786 0.942308
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6BE3; Ligand: NAG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6be3.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
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