Receptor
PDB id Resolution Class Description Source Keywords
5ZK5 2.25 Å NON-ENZYME: TRANSCRIPT_TRANSLATE STAPLED-PEPTIDES TAILORED AGAINST INITIATION OF TRANSLATION HOMO SAPIENS CAP DEPENDENT TRANSLATION RNA BINDING PROTEIN
Ref.: STRUCTURAL INSIGHTS REVEAL A RECOGNITION FEATURE FO TAILORING HYDROCARBON STAPLED-PEPTIDES AGAINST THE EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PROTEIN CHEM SCI V. 10 2489 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MK8 B:101;
 Invalid;
 none;
 submit data
145.199 C7 H15 N O2 CCCC[...
MGT A:1001;
 Valid;
 none;
 submit data
539.223 C11 H20 N5 O14 P3 CN1CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5ZK5 2.25 Å NON-ENZYME: TRANSCRIPT_TRANSLATE STAPLED-PEPTIDES TAILORED AGAINST INITIATION OF TRANSLATION HOMO SAPIENS CAP DEPENDENT TRANSLATION RNA BINDING PROTEIN
Ref.: STRUCTURAL INSIGHTS REVEAL A RECOGNITION FEATURE FO TAILORING HYDROCARBON STAPLED-PEPTIDES AGAINST THE EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PROTEIN CHEM SCI V. 10 2489 2019
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 308 families.
1 5ZK5 - MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 266 families.
1 5ZK5 - MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 220 families.
1 5EHC - 5NX C21 H20 Cl N6 O7 c1cc(cc(c1....
2 5EI3 Kd = 56.5 uM 5O8 C18 H20 F3 N6 O6 S c1ccc(cc1)....
3 5ZJZ - MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
4 5ZJY - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
5 1EJH - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
6 5ZK5 - MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: MGT; Similar ligands found: 20
No: Ligand ECFP6 Tc MDL keys Tc
1 MGT 1 1
2 M7G 0.910256 1
3 8GT 0.557895 0.914634
4 TPG 0.55 0.920455
5 G8D 0.505155 0.914634
6 M7M 0.49505 0.963855
7 U5F 0.458333 0.780488
8 CTP 0.453608 0.829268
9 HF4 0.453608 0.829268
10 UTP 0.447917 0.780488
11 6G0 0.438095 0.837209
12 BUP 0.434343 0.755814
13 8DG 0.433962 0.872093
14 01G 0.433628 0.791209
15 MGP 0.428571 0.837209
16 H6Y 0.428571 0.77907
17 QBQ 0.419048 0.811765
18 8GM 0.414141 0.902439
19 M7G A2M G 0.411765 0.88764
20 GTP 0.411215 0.823529
Similar Ligands (3D)
Ligand no: 1; Ligand: MGT; Similar ligands found: 20
No: Ligand Similarity coefficient
1 MGO 0.9906
2 ACP 0.9160
3 GNP 0.9145
4 GDP 0.9090
5 ANP 0.9080
6 ATP 0.9049
7 DGT 0.9047
8 ADP 0.8986
9 HDV 0.8887
10 HF7 0.8870
11 DTP 0.8868
12 GCP 0.8785
13 DZ4 0.8738
14 ADP BEF 0.8727
15 ALF ADP 0.8717
16 3AT 0.8706
17 ADX 0.8706
18 TTP 0.8701
19 AP2 0.8634
20 GDP BEF 0.8600
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5ZK5; Ligand: MGT; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5zk5.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
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