Receptor
PDB id Resolution Class Description Source Keywords
5YC8 2.5 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF RATIONALLY THERMOSTABILIZED M2 MUSCARIN ACETYLCHOLINE RECEPTOR BOUND WITH NMS (HG-DERIVATIVE) HOMO SAPIENS GPCR CRYSTALLOGRAPHY RATIONALLY THERMOSTABILIZED MUTANT MEPROTEIN
Ref.: STRUCTURAL INSIGHTS INTO THE SUBTYPE-SELECTIVE ANTA BINDING TO THE M2MUSCARINIC RECEPTOR NAT. CHEM. BIOL. V. 14 1150 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
3C0 A:501;
Valid;
none;
Kd = 6.4 nM
318.387 C18 H24 N O4 C[N+]...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5ZKC 2.3 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF RATIONALLY THERMOSTABILIZED M2 MUSCARIN ACETYLCHOLINE RECEPTOR BOUND WITH NMS HOMO SAPIENS GPCR CRYSTALLOGRAPHY RATIONALLY THERMOSTABILIZED MUTANT MEPROTEIN-INHIBITOR COMPLEX
Ref.: STRUCTURAL INSIGHTS INTO THE SUBTYPE-SELECTIVE ANTA BINDING TO THE M2MUSCARINIC RECEPTOR NAT. CHEM. BIOL. V. 14 1150 2018
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 289 families.
1 5ZKC Kd = 6.4 nM 3C0 C18 H24 N O4 C[N+]1([C@....
2 5YC8 Kd = 6.4 nM 3C0 C18 H24 N O4 C[N+]1([C@....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 5ZKC Kd = 6.4 nM 3C0 C18 H24 N O4 C[N+]1([C@....
2 5YC8 Kd = 6.4 nM 3C0 C18 H24 N O4 C[N+]1([C@....
50% Homology Family (32)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 5WIU - AQD C21 H26 Cl N3 O2 C[C@@H]1[C....
2 5WIV - AQD C21 H26 Cl N3 O2 C[C@@H]1[C....
3 5IU7 Ki = 1.1 nM 6DY C21 H24 N8 O c1ccc(cc1)....
4 6ZDV - QGW C19 H19 N O4 S CCCc1cc2c(....
5 5K2C - ZMA C16 H15 N7 O2 c1cc(oc1)c....
6 4EIY - ZMA C16 H15 N7 O2 c1cc(oc1)c....
7 6JZH - ZMA C16 H15 N7 O2 c1cc(oc1)c....
8 6LPJ - ZMA C16 H15 N7 O2 c1cc(oc1)c....
9 5K2B - ZMA C16 H15 N7 O2 c1cc(oc1)c....
10 5IUA Ki = 1.5 nM 6DX C21 H25 N9 O c1ccc(cc1)....
11 6LPK - ZMA C16 H15 N7 O2 c1cc(oc1)c....
12 5OLV Kd = 320 nM 9Y2 C16 H17 F2 N3 O2 S CC(C)(C)CC....
13 5IU4 Ki = 0.53 nM ZMA C16 H15 N7 O2 c1cc(oc1)c....
14 6PS7 - ZMA C16 H15 N7 O2 c1cc(oc1)c....
15 6LPL - ZMA C16 H15 N7 O2 c1cc(oc1)c....
16 5OM1 Kd = 250 pM T4E C15 H11 Cl N4 O c1ccc(cc1)....
17 5IUB Ki = 0.35 nM 6DV C20 H21 F2 N9 O c1cc(oc1)c....
18 6ZDR - QGE C18 H17 N O4 S CCCc1cc2c(....
19 5K2D - ZMA C16 H15 N7 O2 c1cc(oc1)c....
20 5VRA - ZMA C16 H15 N7 O2 c1cc(oc1)c....
21 5OM4 Kd = 250 pM T4E C15 H11 Cl N4 O c1ccc(cc1)....
22 5IU8 Ki = 18 nM 6DZ C15 H21 N9 O CN1CCN(CC1....
23 5MZP - CFF C8 H10 N4 O2 Cn1cnc2c1C....
24 5MZJ - TEP C7 H8 N4 O2 CN1c2c([nH....
25 5OLG Kd = 2.5 nM ZMA C16 H15 N7 O2 c1cc(oc1)c....
26 5K2A - ZMA C16 H15 N7 O2 c1cc(oc1)c....
27 5OLZ Kd = 250 pM T4E C15 H11 Cl N4 O c1ccc(cc1)....
28 4PXZ - 6AD C11 H17 N5 O10 P2 S CSc1nc(c2c....
29 5ZKC Kd = 6.4 nM 3C0 C18 H24 N O4 C[N+]1([C@....
30 5YC8 Kd = 6.4 nM 3C0 C18 H24 N O4 C[N+]1([C@....
31 6RZ7 - KNW C30 H30 Cl F N2 O7 c1cc(c2c(c....
32 6RZ6 - KNW C30 H30 Cl F N2 O7 c1cc(c2c(c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 3C0; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 3C0 1 1
2 HYO 0.523077 0.721311
3 OIN 0.523077 0.721311
Similar Ligands (3D)
Ligand no: 1; Ligand: 3C0; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5ZKC; Ligand: 3C0; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5zkc.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
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