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Receptor
PDB id Resolution Class Description Source Keywords
5YB7 2 Å EC: 1.4.3.2 L-AMINO ACID OXIDASE/MONOOXYGENASE FROM PSEUDOMONAS SP. AIU ORNITHINE COMPLEX PSEUDOMONAS SP. AIU 813 L-AMINO ACID OXIDASE/MONOOXYGENASE FLAVIN-CONTAINING MONOAMOXIDASE FAMILY FLAVIN MONOOXYGENASES L-ORNITHINE OXIDORE
Ref.: LIGAND COMPLEX STRUCTURES OF L-AMINO ACID OXIDASE/MONOOXYGENASE FROM FEBS OPEN BIO V. 8 314 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ORN D:602;
B:602;
B:603;
A:603;
A:602;
C:602;
D:603;
C:603;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
132.161 C5 H12 N2 O2 C(C[C...
FAD B:601;
A:601;
D:601;
C:601;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5YB7 2 Å EC: 1.4.3.2 L-AMINO ACID OXIDASE/MONOOXYGENASE FROM PSEUDOMONAS SP. AIU ORNITHINE COMPLEX PSEUDOMONAS SP. AIU 813 L-AMINO ACID OXIDASE/MONOOXYGENASE FLAVIN-CONTAINING MONOAMOXIDASE FAMILY FLAVIN MONOOXYGENASES L-ORNITHINE OXIDORE
Ref.: LIGAND COMPLEX STRUCTURES OF L-AMINO ACID OXIDASE/MONOOXYGENASE FROM FEBS OPEN BIO V. 8 314 2018
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 5YB6 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3WE0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 5YB7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 5YB8 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 5YB6 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3WE0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 5YB7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 5YB8 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 5YB6 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3WE0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 5YB7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 5YB8 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ORN; Similar ligands found: 57
No: Ligand ECFP6 Tc MDL keys Tc
1 ORN 1 1
2 DLY 0.714286 0.961538
3 API 0.653846 0.785714
4 DAB 0.615385 0.888889
5 NLE 0.566667 0.724138
6 2YH 0.564103 0.757576
7 11C 0.548387 0.724138
8 UN1 0.548387 0.724138
9 0TF 0.536585 0.714286
10 LYS 0.53125 0.925926
11 DHH 0.53125 0.7
12 NPI 0.515152 0.7
13 ONH 0.515152 0.735294
14 6CL 0.5 0.758621
15 26P 0.5 0.65625
16 HSE 0.5 0.733333
17 2RA 0.5 0.785714
18 CIR 0.485714 0.735294
19 NVA 0.482759 0.714286
20 HCS 0.482759 0.814815
21 MLY 0.472222 0.631579
22 ARG 0.472222 0.757576
23 2NP 0.472222 0.6
24 MLZ 0.472222 0.757576
25 DAR 0.472222 0.757576
26 CUW 0.470588 0.833333
27 2YJ 0.465116 0.714286
28 2YG 0.454545 0.714286
29 MSE 0.454545 0.636364
30 GLU 0.451613 0.689655
31 DGL 0.451613 0.689655
32 DGN 0.451613 0.677419
33 GGL 0.451613 0.689655
34 GLN 0.451613 0.677419
35 DSN 0.444444 0.689655
36 DBB 0.444444 0.666667
37 ABA 0.444444 0.666667
38 SER 0.444444 0.689655
39 5CT 0.44186 0.735294
40 WT2 0.439024 0.78125
41 HRG 0.435897 0.757576
42 ALY 0.435897 0.735294
43 ILO 0.435897 0.757576
44 AS2 0.433333 0.62069
45 DCY 0.428571 0.740741
46 CYS 0.428571 0.740741
47 C2N 0.428571 0.703704
48 NOT 0.425 0.705882
49 EXY 0.425 0.611111
50 ONL 0.424242 0.625
51 2FM 0.416667 0.677419
52 NMM 0.414634 0.714286
53 HAR 0.414634 0.625
54 VUR 0.414634 0.735294
55 4JK 0.414634 0.714286
56 MET 0.411765 0.65625
57 MED 0.411765 0.65625
Ligand no: 2; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5YB7; Ligand: FAD; Similar sites found with APoc: 914
This union binding pocket(no: 1) in the query (biounit: 5yb7.bio2) has 54 residues
No: Leader PDB Ligand Sequence Similarity
1 1Z45 NAD 0.862069
2 4C4A SAH 1.03448
3 2AQJ FAD 1.11524
4 2AQJ TRP 1.11524
5 5WXU FLC 1.25261
6 1GQ2 NAP 1.26126
7 1YQT ADP 1.30112
8 5YAP NAI 1.31579
9 5YAP 8S0 1.31579
10 2NPX FAD 1.34228
11 2NPX NAD 1.34228
12 3ABI NAD 1.36986
13 2JHP SAH 1.55172
14 3E1T FAD 1.5625
15 3OA2 NAD 1.57233
16 1QZZ SAM 1.60428
17 1MUU NAD 1.6055
18 1MV8 NAD 1.6055
19 5DNK SAH 1.62455
20 2J5V PCA 1.63488
21 5UAO FAD 1.66359
22 1BXK NAD 1.69014
23 2G50 ALA 1.69811
24 2I3G NAP 1.70455
25 3GDN HBX 1.72414
26 3GDN FAD 1.72414
27 4A59 AMP 1.72414
28 5JWC FAD 1.72745
29 4YNU LGC 1.75131
30 4YNU FAD 1.75131
31 4CIB 7UZ 1.75824
32 4LJ9 ACP 1.76991
33 5AOV NAP 1.78571
34 3L4S NAD 1.78571
35 4B63 FAD 1.79641
36 4B63 ORN 1.79641
37 4B63 NAP 1.79641
38 2GCG NDP 1.81818
39 3HIY UTP 1.82292
40 1M2W NAD 1.82556
41 6EL3 NAP 1.83727
42 3NJ4 NAD 1.83908
43 5WBF LAC 1.85185
44 3A06 NDP 1.8617
45 1F8F NAD 1.88679
46 2WPF WPF 1.89655
47 2WPF FAD 1.89655
48 6H3O FAD 1.89655
49 1DJN ADP 1.89655
50 4TXI FAD 1.89655
51 1F52 ADP 1.92308
52 2XVF FAD 1.93966
53 1GEG NAD 1.95312
54 1Q19 APC 1.98807
55 1Q19 SSC 1.98807
56 2CDU ADP 1.99115
57 2CDU FAD 1.99115
58 1JQ3 AAT 2.02703
59 4XYB NDP 2.04604
60 1YQZ FAD 2.05479
61 1Q9I FAD 2.10158
62 1Q9I TEO 2.10158
63 1CER NAD 2.1148
64 5VN0 FAD 2.12355
65 5VN0 NAI 2.12355
66 4YT4 FE9 2.13333
67 4DCM SAM 2.13333
68 2XVE FAD 2.15517
69 2PK3 A2R 2.18069
70 1VM6 NAD 2.19298
71 5DN9 NAD 2.1978
72 2BRY FAD 2.21328
73 3FUU ADN 2.21402
74 1LDN NAD 2.21519
75 4M3P HCS 2.21675
76 5ZW3 SAH 2.22222
77 1SC6 NAD 2.22772
78 1PL6 NAD 2.24719
79 1PL6 572 2.24719
80 3RFV 15L 2.24719
81 3LRE ADP 2.25352
82 5EB4 FAD 2.25564
83 1I36 NAP 2.27273
84 1TI7 NAP 2.27273
85 3GFB NAD 2.28571
86 5G6U TRP 2.29885
87 4ZGS NAD 2.33161
88 3OJF NDP 2.33463
89 3OJF IMJ 2.33463
90 3WLE NAD 2.34604
91 3B20 NAD 2.35988
92 1XTP SAI 2.3622
93 5OCM NAP 2.4055
94 1KNR FAD 2.40741
95 1J0X NAD 2.40964
96 3LL5 IP8 2.40964
97 1PN0 FAD 2.41379
98 1PN0 IPH 2.41379
99 4NTO 1PW 2.41546
100 5GSN MMZ 2.42826
101 5GSN NAP 2.42826
102 5GSN FAD 2.42826
103 3NT6 FAD 2.43902
104 3NTA FAD 2.43902
105 1KPG SAH 2.43902
106 1KPH SAH 2.43902
107 1TPY SAH 2.43902
108 6C4T NA7 2.44444
109 1FEC FAD 2.44898
110 1ZGS XMM 2.46085
111 5THY SAH 2.46914
112 5THZ SAH 2.46914
113 2RGO FAD 2.47117
114 3LU1 NAD 2.47253
115 3NTD FAD 2.47788
116 6D6Y SAH 2.48566
117 2A92 NAI 2.49221
118 1WUU ANP 2.50627
119 3BXO SAM 2.51046
120 1EBF NAD 2.51397
121 1DL5 SAH 2.52366
122 1BW9 NAD 2.52809
123 1BXG NAD 2.52809
124 1C1X NAD 2.53521
125 4D79 ATP 2.53623
126 1U1I NAD 2.55102
127 5X20 NAD 2.5641
128 4XFR CIT 2.57611
129 1NYT NAP 2.58303
130 3ICT ADP 2.58621
131 3ICS ADP 2.58621
132 1O6Z NAD 2.58621
133 3ICR FAD 2.58621
134 3ICS FAD 2.58621
135 3ICT FAD 2.58621
136 2D2I NAP 2.58621
137 5N2I NAP 2.58621
138 4FL3 ANP 2.58621
139 5ICK FEZ 2.62009
140 1GET NAP 2.66667
141 1GET FAD 2.66667
142 1CF2 NAP 2.67062
143 6C4N NAP 2.67261
144 1BZL FAD 2.6749
145 1BZL GCG 2.6749
146 1D1T NAD 2.68097
147 1P0F NAP 2.68097
148 3KB6 NAD 2.69461
149 6FDF SAH 2.69461
150 1J49 NAD 2.7027
151 5ACM MBT 2.7027
152 1OBB NAD 2.70833
153 5X62 SAH 2.70936
154 2PWY SAH 2.71318
155 6BQ6 TER 2.71903
156 5FFF NAP 2.72374
157 3K5I AIR 2.72953
158 1P31 EPU 2.73684
159 5EVY FAD 2.73973
160 2GJP MAL 2.75862
161 1GZ6 NAI 2.75862
162 3H4V NAP 2.77778
163 4DPL NAP 2.78552
164 4H4D 10E 2.78638
165 3DAG FEG 2.7933
166 5LD5 NAD 2.7933
167 5FI3 NAP 2.80112
168 2DKH 3HB 2.8169
169 2DKH FAD 2.8169
170 4LS7 1X9 2.8169
171 1E1M NAP 2.82609
172 1E1M FAD 2.82609
173 1EZ4 NAD 2.83019
174 4FBL SPD 2.84698
175 2C7G ODP 2.85088
176 2C7G FAD 2.85088
177 4TSK NDP 2.85714
178 2F1K NAP 2.86738
179 1UP7 NAD 2.8777
180 5GWT NAD 2.8777
181 4YKG NAD 2.87908
182 4YKG FAD 2.87908
183 3ZNN 4WL 2.88184
184 3ZNN FAD 2.88184
185 3WGT FAD 2.88184
186 3WGT QSC 2.88184
187 5E9W SAH 2.88462
188 2AWN ADP 2.88714
189 2BKX F6R 2.89256
190 3NGL NAP 2.89855
191 4D3F NAP 2.90323
192 5M8T 0TR 2.9148
193 1V8B NAD 2.92276
194 2GMH FAD 2.93103
195 3GD4 NAD 2.93542
196 3GD4 FAD 2.93542
197 1ZUW DGL 2.94118
198 5A04 BGC 2.94985
199 5A04 NDP 2.94985
200 4L8V NAP 2.96736
201 2XVM SAH 3.01508
202 2PV7 NAD 3.02013
203 1PIG BGC GLC 3.02419
204 4YAC NAI 3.0303
205 2AG8 NAP 3.04183
206 4BV6 FAD 3.0426
207 2HJR APR 3.04878
208 1SOW NAD 3.04878
209 5FJN FAD 3.07018
210 5FJN BE2 3.07018
211 2X6T NAP 3.08123
212 5H81 NAP 3.08483
213 1G51 AMP 3.10345
214 3X0D SAH 3.10345
215 6F3M NAD 3.10345
216 1XXR MAN 3.10559
217 3CGB FAD 3.125
218 1LUA NAP 3.13589
219 1NAA ABL 3.14233
220 1NAA 6FA 3.14233
221 2OEM 1AE 3.1477
222 4K5S FAD 3.17164
223 4K5S PM0 3.17164
224 2VOH CIT 3.18471
225 2R4J FAD 3.19361
226 2R4J 13P 3.19361
227 3T31 FAD 3.20366
228 3T31 DCQ 3.20366
229 5KMS FAD 3.20988
230 5KMS NAD 3.20988
231 1GUZ NAD 3.22581
232 2RAB NAD 3.23974
233 2RAB FAD 3.23974
234 3OFK SAH 3.24074
235 4USI AKG 3.24675
236 1Q1R FAD 3.24826
237 4XDY NAI 3.25444
238 1X87 NAD 3.26679
239 5BRT FAD 3.27586
240 5BRT CH9 3.27586
241 3A4V PYR 3.27586
242 3A4V NAD 3.27586
243 2FWP CIT 3.27869
244 2FWP ICR 3.27869
245 3WBF NAP 3.27869
246 3WBF API 3.27869
247 1VQW FAD 3.28228
248 2O07 MTA 3.28947
249 2O07 SPD 3.28947
250 4KOA NDP 3.3033
251 3B9Q MLI 3.31126
252 1W6U NAP 3.31126
253 1WVG APR 3.34262
254 2GVC FAD 3.3557
255 2GV8 FAD 3.3557
256 2GV8 NDP 3.3557
257 2CVQ NDP 3.36391
258 1WOQ BGC 3.37079
259 5U5G NAP 3.38983
260 4EMI FAD 3.41463
261 4EMI NAD 3.41463
262 3BBH SFG 3.41463
263 5GT9 NAP 3.42205
264 5UR0 NAD 3.4384
265 1JG3 ADN 3.44828
266 1R37 NAD 3.45821
267 4WVW SLT 3.47222
268 2GSD NAD 3.48259
269 3CGD FAD 3.54167
270 3CGD COA 3.54167
271 3CGD NAD 3.54167
272 2HQM FAD 3.54906
273 1HYH NAD 3.55987
274 5AHO TLA 3.57143
275 3OZG SSI 3.6
276 4NBU NAI 3.6
277 4USR FAD 3.60111
278 1SAY PYR 3.60111
279 5CG1 NAD BBN 3.60656
280 5A96 GTP 3.61446
281 3LXD FAD 3.61446
282 9LDT NAD 3.61446
283 9LDB NAD 3.61446
284 1HDG NAD 3.61446
285 1D4D FAD 3.62069
286 1PZG A3D 3.62538
287 1LDM NAD 3.64742
288 3DXY SAM 3.66972
289 5N18 8HZ 3.66972
290 6AR9 3L4 3.67647
291 3OJO NAD 3.7123
292 3AY6 NAI 3.71747
293 1VKO NAD 3.72439
294 1SQF SAM 3.7296
295 3IHG FAD 3.73832
296 1F74 NAY 3.75427
297 1FS5 TLA 3.7594
298 3OZ2 FAD 3.77834
299 5KOX RFP 3.78151
300 5KOX FAD 3.78151
301 1O94 ADP 3.78788
302 5WGR FAD 3.7931
303 5TC4 NAD 3.79747
304 2QA1 FAD 3.8
305 2IV3 UDP 3.80117
306 1GZ4 ATP 3.81125
307 2E5V FAD 3.81356
308 2NAD NAD 3.81679
309 5WUW NAP 3.83275
310 3UCL CYH 3.83944
311 3UCL FAD 3.83944
312 3UCL NAP 3.83944
313 5ZI9 FLC 3.84615
314 1ZQ9 SAM 3.85965
315 5WP4 SAH 3.86965
316 3L9W AMP 3.87409
317 3L9W GSH 3.87409
318 3AFN NAP 3.87597
319 5AYV NAP 3.8835
320 5AYV KPL 3.8835
321 4Z0H NAD 3.89222
322 6CEP NAD 3.89222
323 6CEP OXM 3.89222
324 5OC1 FAD 3.89381
325 5YSS NAD 3.90625
326 2WET FAD 3.91389
327 5NUF NAD 3.91566
328 5NUE NAD 3.91566
329 2YVF NAD 3.92157
330 2YVF FAD 3.92157
331 2ZXI FAD 3.92465
332 4KRI SAH 3.9261
333 1LVL NAD 3.93013
334 1LVL FAD 3.93013
335 1J5P NAD 3.95257
336 1R18 SAH 3.96476
337 1Y8Q ATP 3.96552
338 2PHX MAN MAN MAN MAN 3.96825
339 1Q8V MAN MAN 3.96825
340 2PHU MAN MAN 3.96825
341 1Q8Q MAN MMA 3.96825
342 1FAO 4IP 3.96825
343 2PHF MAN MAN BMA MAN 3.96825
344 2PHR MAN MAN BMA MAN 3.96825
345 2AUY NAG MAN MMA 3.96825
346 2PHT MAN MAN MAN BMA MAN 3.96825
347 3SQP FAD 3.9749
348 4MLO PAM 3.98551
349 5BUK FAD 4
350 4POO SAM 4
351 4EIP K2C 4.00729
352 6ER9 FAD 4.00729
353 6ER9 NAP 4.00729
354 4EIP FAD 4.00729
355 4JDR FAD 4.00844
356 6FHO FAD 4.01003
357 6FP4 FAD 4.01338
358 6FP4 E1T 4.01338
359 2DFV NAD 4.03458
360 1ORR NAD 4.03458
361 1OMO NAD 4.03727
362 5UAV NDP 4.03727
363 5UAV TFB 4.03727
364 5EES NAP 4.04858
365 5K4W NAI 4.04984
366 5K4W THR 4.04984
367 1NVM NAD 4.05797
368 6F7L FAD 4.0724
369 1LTH NAD 4.07523
370 4CJX NAP 4.07523
371 4LWP SAH 4.07609
372 4M52 FAD 4.07725
373 4M52 M52 4.07725
374 4YCA NDP 4.08163
375 5AHW CMP 4.08163
376 2A8X FAD 4.09483
377 3GMB FAD 4.09639
378 1QAN SAH 4.09836
379 2WD7 NAP 4.10448
380 4Z24 FAD 4.13793
381 1GTE FAD 4.13793
382 3NB0 G6P 4.13793
383 1NVT NAP 4.18118
384 1V59 NAD 4.1841
385 1V59 FAD 4.1841
386 1GV0 NAD 4.19355
387 1EQ2 NAP 4.19355
388 4D7E FAD 4.1958
389 1QMG APX 4.19847
390 3NYC IAR 4.19948
391 3NYC FAD 4.19948
392 1DSS NAD 4.2042
393 3UOY FAD 4.22018
394 3UOY NAP 4.22018
395 3VYW SAM 4.22078
396 4R5M NAP 4.25532
397 1KOL NAD 4.27136
398 4GK9 MAN BMA MAN MAN MAN 4.30108
399 5MQ6 NDP 4.31034
400 2IXB NAD 4.31034
401 2IXB A2G 4.31034
402 6F4T OGA 4.31373
403 1VI2 NAD 4.33333
404 3F8D FAD 4.33437
405 4MTI 2DX 4.34783
406 1GR0 NAD 4.35967
407 2NU8 COA 4.38144
408 2CUN 3PG 4.39024
409 5Y77 FAD 4.43975
410 2O66 FLC 4.44444
411 1RM4 NDP 4.45104
412 3H8V ATP 4.45205
413 3FG2 FAD 4.45545
414 1H2B NAJ 4.45682
415 3DMH SAM 4.46194
416 3AXB PRO 4.46429
417 3AXB FAD 4.46429
418 1HYE NAP 4.47284
419 5YV5 ADP 4.47761
420 1X14 NAD 4.48878
421 1NPD NAD 4.51389
422 2WQN ADP 4.51613
423 4RQU NAD 4.53333
424 1DIG NAP 4.57516
425 4YMH SAH 4.58333
426 5TVA AMP 4.58333
427 5DX0 SFG 4.58453
428 5DX8 SFG 4.58453
429 5DWQ SFG 4.58453
430 5DX1 SFG 4.58453
431 5DXA SFG 4.58453
432 5GZZ GSH 4.58716
433 4OPC PGT 4.63576
434 4OPC FDA 4.63576
435 5J5Z FAD 4.6371
436 3A28 NAD 4.65116
437 5JY4 ISC 4.65517
438 5JXZ ISC 4.65517
439 5JXZ ISJ 4.65517
440 2OOR NAD 4.6875
441 1F8G NAD 4.6875
442 1L7E NAI 4.6875
443 5OJL TXP 4.69799
444 4Q9N NAI 4.69799
445 2NVK NAP 4.71311
446 2NVK FAD 4.71311
447 3KIF GDL 4.71698
448 4MP8 MLI 4.71976
449 4MP8 NAD 4.71976
450 1COY FAD 4.73373
451 1COY AND 4.73373
452 4FZV SAM 4.73538
453 4TM3 FAD 4.74041
454 4J1Q NDP 4.74138
455 1KYQ NAD 4.74453
456 3S5W FAD 4.75162
457 3S5W NAP 4.75162
458 5MZI FAD 4.77223
459 5MZI FYK 4.77223
460 4BVA NDP 4.77612
461 5U8U FAD 4.7817
462 6AIN FAD 4.78469
463 1YKJ FAD 4.82234
464 1YKJ PHB 4.82234
465 4F8L AES 4.82759
466 1FL2 FAD 4.83871
467 3VPH NAD 4.83871
468 3VPH OXM 4.83871
469 1WP4 NDP 4.84429
470 2CVZ NDP 4.84429
471 6C4M NAP 4.85232
472 1HFE CYS 4.87805
473 5JCM FAD 4.87805
474 5JCM ISD 4.87805
475 5JCM NAD 4.87805
476 5WP5 SAH 4.88798
477 5J7X FAD 4.91803
478 2JJQ SAH 4.94118
479 4E13 NAD 4.947
480 4M37 SAH 4.95627
481 1C0I FAD 4.95868
482 1C0I BE2 4.95868
483 1ZEM NAD 4.96183
484 3G5S FAD 4.96614
485 5JE8 NAD 4.96689
486 2G5C NAD 4.98221
487 4USQ FAD 4.98615
488 4MIG G3F 5
489 3SSO SAH 5.01193
490 1A5Z NAD 5.01567
491 4J4H 1J1 5.01931
492 4J4H NAI 5.01931
493 2VHW NAI 5.03979
494 5YEC ATP 5.04202
495 2D24 XYS XYS 5.04587
496 4B5W PYR 5.07812
497 5CAE COA 5.11182
498 5X68 FAD 5.11509
499 1ELI PYC 5.14139
500 1MO9 KPC 5.16252
501 1MO9 FAD 5.16252
502 4D04 FAD 5.16605
503 4D04 NAP 5.16605
504 3W54 RNB 5.16717
505 1PS9 FAD 5.17241
506 2CUL FAD 5.17241
507 1PS9 NAP 5.17241
508 3H9E NAD 5.20231
509 4XZ3 COA 5.21739
510 5ERG SAM 5.22193
511 1FWV SGA MAG FUC 5.22388
512 5D4V SAH 5.22388
513 5AHM IMP 5.25
514 3LAD FAD 5.2521
515 4JLS 3ZE 5.26316
516 5HXI FAD 5.27704
517 5HXI 5HN 5.27704
518 1H5Q NAP 5.28302
519 4U00 ADP 5.32787
520 5GS9 ARG 5.34125
521 5EZ7 FAD 5.35714
522 5N1Q TP7 5.36398
523 6A3J NAI 5.36585
524 4NTC FAD 5.37313
525 4JK3 NAD 5.40541
526 5N0J FAD 5.41311
527 3H2B SAH 5.41872
528 5EOW FAD 5.4321
529 1XHC FAD 5.44959
530 4AP3 FAD 5.46448
531 4AP3 NAP 5.46448
532 3TY3 GGG 5.46448
533 1E6E FAD 5.46875
534 2RGJ FAD 5.47264
535 1Q3Q ANP 5.47445
536 1QO8 FAD 5.47703
537 5JCA FAD 5.48523
538 5JCA NDP 5.48523
539 4HA6 FAD 5.51181
540 5Z21 NAI 5.51724
541 5HSA FAS 5.51724
542 1XPJ TLA 5.55556
543 2Q1S NAI 5.57029
544 2VT3 ATP 5.5814
545 5EFQ ADP 5.59701
546 4KIB SAH 5.60224
547 2PT9 S4M 5.60748
548 1YJQ NAP 5.61056
549 1RP0 AHZ 5.6338
550 5NA1 FAD 5.63725
551 3CTY FAD 5.64263
552 1YS4 NAP 5.64972
553 5N6C NAD 5.66667
554 3CB2 GDP 5.68421
555 1PJS NAD 5.68928
556 4FWE FAD 5.68966
557 3QRC SCR 5.73248
558 5KVA SAM 5.7554
559 5DBX ANP 5.79268
560 5GZ6 NDP 5.82822
561 5GZ6 7C3 5.82822
562 3DUW SAH 5.8296
563 3CIF NAD 5.84958
564 3CIF G3H 5.84958
565 2IVD FAD 5.85774
566 1AE1 NAP 5.86081
567 5A1T NAI 5.8651
568 1KJ8 GAR 5.88235
569 5I39 FAD 5.88235
570 2CZL TLA 5.88235
571 4BJZ P3A 5.89623
572 4BJZ FAD 5.89623
573 4XZ6 TMO 5.8997
574 5XNC MTA 5.92992
575 1TL2 NDG 5.9322
576 2RGH FAD 5.95447
577 4YRY FAD 5.98291
578 4YRY NAD 5.98291
579 3OIG NAD 6.01504
580 4J36 1HR 6.0241
581 4J36 FAD 6.0241
582 1QPG MAP 6.0241
583 2F7A BEZ 6.03448
584 1O0S NAI 6.03448
585 3RYC GDP 6.03448
586 2VVL FAD 6.06061
587 2VVM FAD 6.06061
588 1E3I CXF 6.11702
589 2OQ2 A3P 6.13027
590 5BSH PRO 6.13718
591 4J56 FAD 6.14035
592 1WDK NAD 6.15385
593 1KNM LAT 6.15385
594 2DT5 NAD 6.16114
595 3AIA SAM 6.16114
596 2AOT SAH 6.16438
597 4TQG NDP 6.19195
598 1IZC PYR 6.19469
599 1YP4 ADP 6.20843
600 1VJT NAD 6.21118
601 3H5N ATP 6.23229
602 1OXV ANP 6.23229
603 3KLJ FAD 6.23377
604 2F5Z FAD 6.25
605 3BAZ NAP 6.30631
606 6A0S HSE 6.3253
607 6A0S NDP 6.3253
608 4PLT OXM 6.34441
609 4PLT NAI 6.34441
610 2I7C AAT 6.36042
611 5BW4 SAM 6.36704
612 5ZYN FAD 6.36943
613 5ZYN FMN 6.36943
614 2Z3Y F2N 6.37931
615 4JJF FE9 6.39535
616 6F97 FAD 6.40301
617 2YYY NAP 6.41399
618 2YVJ NAI 6.42202
619 2YVJ FAD 6.42202
620 5Y8L HUI 6.44068
621 5Y8L NAD 6.44068
622 2Q7V FAD 6.46154
623 4REP FAD 6.46465
624 1ZH8 NAP 6.47059
625 1GEE NAD 6.51341
626 4EMJ FAD 6.54206
627 1F3L SAH 6.54206
628 1NE7 AGP 6.55172
629 1Z82 NDP 6.56716
630 5TUF TDC 6.60147
631 5TUF FAD 6.60147
632 2Q1W NAD 6.60661
633 4DSG UDP 6.61157
634 4DSG FAD 6.61157
635 4MOP 2H5 6.63507
636 5K0A FAD 6.66667
637 1JI0 ATP 6.66667
638 2B4R AES 6.66667
639 2B4R NAD 6.66667
640 5OF1 SAL 6.66667
641 5YU3 PRO 6.68605
642 5YU3 NAD 6.68605
643 3GGO ENO 6.6879
644 3GGO NAI 6.6879
645 2Y6Q FAD 6.72414
646 2Y6Q I7T 6.72414
647 5Z75 NAD 6.72783
648 4RSL FAD 6.74157
649 1RSG FAD 6.78295
650 5NII FAD 6.79612
651 1RYI GOA 6.80628
652 1RYI FAD 6.80628
653 2RI1 GLP 6.80851
654 2FLI DX5 6.81818
655 1YY5 FAD 6.82261
656 2Y6P CTP 6.83761
657 5XVH NAP 6.86275
658 2V6G NAP 6.86813
659 1B0U ATP 6.87023
660 1FDJ 13P 6.88705
661 1GPE FAD 6.89655
662 5HS2 CTP 6.89655
663 3CBG SAH 6.89655
664 5L4L NAP 6.90789
665 1C3V NDP 6.93878
666 4RDH AMP 6.94444
667 4RDI ATP 6.94444
668 6GAS FAD 6.94864
669 2IZ1 ATR 6.96203
670 1HKU NAD 6.98324
671 1H82 GZZ 6.99153
672 1H82 FAD 6.99153
673 3PUR 2HG 7.00758
674 3QWI NAP 7.03704
675 5TUK FAD 7.06897
676 3AYI HCI 7.07351
677 3AYI FAD 7.07351
678 4R78 AMP 7.11974
679 1I9G SAM 7.14286
680 1X7D NAD 7.14286
681 5J60 FAD 7.1875
682 5FEU NAP 7.2165
683 1CDO NAD 7.21925
684 1EJ0 SAM 7.22222
685 3G89 SAM 7.22892
686 3B1F NAD 7.24138
687 1TDF NAP 7.27848
688 1TDF FAD 7.27848
689 4CQM NAP 7.27969
690 6AA8 NAD 7.28477
691 3JQA NAP 7.29167
692 5K6A NAP 7.29167
693 3JQ9 NAP 7.29167
694 3BMN NAP 7.29167
695 3JQ7 NAP 7.29167
696 5JDI NAP 7.29167
697 3BMO NAP 7.29167
698 3BMQ NAP 7.29167
699 3JQF NAP 7.29167
700 4CM9 NAP 7.29167
701 5JCJ NAP 7.29167
702 4CM8 NAP 7.29167
703 4CM4 NAP 7.29167
704 5JDC NAP 7.29167
705 4CMI NAP 7.29167
706 4CLR NAP 7.29167
707 3JQG NAP 7.29167
708 3JQ8 NAP 7.29167
709 4CME NAP 7.29167
710 4CLO NAP 7.29167
711 3JQB NAP 7.29167
712 5Z2L NDP 7.34694
713 4NTD FAD 7.35294
714 3G2O SAM 7.35786
715 1HDR NAD 7.37705
716 3GRU AMP 7.45763
717 5MPT SAH 7.48792
718 5N5D SAM 7.52212
719 1P1C SAH 7.53769
720 5E5U MLI 7.53769
721 3WMX NAD 7.5419
722 2FK8 SAM 7.54717
723 4B4U NAP 7.59076
724 5OFW 9TW 7.62332
725 3Q9T FAY 7.62565
726 5MBX FAD 7.64588
727 5MBX SP5 7.64588
728 1DZT ATY 7.65027
729 2CDC NAP 7.65027
730 2CDC XYS 7.65027
731 2CDC XYP 7.65027
732 1QG6 NAD 7.66284
733 2B56 U5P 7.69231
734 1DRV A3D 7.69231
735 5THQ NDP 7.72059
736 4ZCC FAD 7.7381
737 4ZCC NAI 7.7381
738 3TWO NDP 7.75862
739 4XB2 NDP 7.76119
740 4XB2 HSE 7.76119
741 1G6H ADP 7.7821
742 5TWB FAD 7.84884
743 1VL0 NAI 7.87671
744 5E1M SAH 7.88382
745 5LOL GSH 7.90698
746 5TTJ FAD 7.95918
747 3TW1 AHN 8.01688
748 5O4J 9KH 8.0292
749 5O4J SAH 8.0292
750 5O4J PJL 8.0292
751 2JFQ DGL 8.04196
752 4C3Y FAD 8.10345
753 4C3Y ANB 8.10345
754 3U4C NDP 8.18505
755 3HQP FDP 8.21643
756 3SJU NDP 8.24373
757 2NXE SAM 8.26772
758 5NM7 GLY 8.27068
759 3FPZ AHZ 8.28221
760 5KKA 6V0 8.33333
761 4PLG OXM 8.38323
762 4PLG NAI 8.38323
763 1B4B ARG 8.4507
764 2VYN NAD 8.45921
765 1GAD NAD 8.48485
766 5F8F SFG 8.48806
767 3NIM ARG ARG ALA ALA 8.53659
768 4U8P UDP 8.577
769 4U8P FDA 8.577
770 5OVK NDP 8.59375
771 1ZK7 FAD 8.62069
772 4AT0 FAD 8.62745
773 5ZZ6 ADP 8.65385
774 5ZZ6 NAD 8.65385
775 2JL1 NAP 8.7108
776 3WV8 ATP 8.7156
777 5N53 8NB 8.71795
778 3QJ4 FAD 8.77193
779 1YKF NAP 8.80682
780 1B8U NAD 8.81459
781 3AB1 FAD 8.88889
782 3V1Y NAD 8.90208
783 3OID NDP 8.91473
784 3LCC SAH 8.93617
785 6F5W KG1 8.94309
786 4FN4 NAD 9.05512
787 5KVS NAP 9.09091
788 6MJ7 ARG 9.09091
789 1NM5 NAD 9.11458
790 5NMX FAD 9.17647
791 5NMX NAP 9.17647
792 6GNC FAD 9.18367
793 2Q0L NAP 9.32476
794 2Q0L FAD 9.32476
795 1JNR FAD 9.33333
796 1UXG NAD 9.38511
797 1UXG FUM 9.38511
798 3D36 ADP 9.42623
799 4O0L NDP 9.45455
800 5MIT NAP 9.48012
801 5MIT FAD 9.48012
802 2YG3 FAD 9.49227
803 1G0N NDP 9.54064
804 3ORF NAD 9.56175
805 2YY7 NAD 9.61539
806 3JWH SAH 9.67742
807 5ODQ FAD 9.699
808 2HK9 ATR 9.81818
809 2HK9 NAP 9.81818
810 3HDY FAD 9.82368
811 3HDY FDA 9.82368
812 3HDY GDU 9.82368
813 3NKS FAD 9.85325
814 2XWL CTP 9.86547
815 5EIN NAP 9.88372
816 1KEV NDP 9.97151
817 4OM8 NAD 10.0324
818 2B9W FAD 10.1415
819 4MDH NAD 10.1796
820 3MB5 SAM 10.1961
821 5MDH NAD 10.2102
822 1NV8 SAM 10.2113
823 1NV8 MEQ 10.2113
824 3A4T SFG 10.219
825 3QFA FAD 10.3448
826 4QTU SAM 10.3704
827 4GKV NAD 10.4167
828 5ZBC FAD 10.4213
829 2BGM NAJ 10.4317
830 3FZG SAM 10.5
831 1LSS NAD 10.7143
832 3QVP FAD 10.8062
833 4MO2 FAD 10.8696
834 4MO2 FDA 10.8696
835 6GAR FAD 10.8883
836 1L3I SAH 10.9375
837 3GF4 UPG 11.0256
838 3GF4 FAD 11.0256
839 3MCT SAH 11.1111
840 4GUT FAD 11.2903
841 4HSU FAD 11.2903
842 4GUS FAD 11.2903
843 5G3U ITW 11.3475
844 5G3U FDA 11.3475
845 3Q3C NAD 11.3712
846 3MAG SAH 11.4007
847 6BII NAP 11.4114
848 1I8T FAD 11.4441
849 1EDO NAP 11.4754
850 4CNK FAD 11.509
851 2O4C NAD 11.5789
852 2DBZ NAP 11.6766
853 5BVA FAD 11.7359
854 6E8I PTR 11.8343
855 4X9M FAD 11.9617
856 1BZY IMU 11.9816
857 4E5N NAD 12.1212
858 3ICC NAP 12.1569
859 3QV1 NAD 12.1951
860 3SJ7 NDP 12.3016
861 6GNA FAD 12.5
862 1SBR VIB 12.5
863 6F5Z SAH 12.5541
864 4UP3 NDP 12.7389
865 4UP3 FAD 12.7389
866 4RPL FAD 12.782
867 4RPL 3UC 12.782
868 1LLU NAD 12.8655
869 2BOS GLA GAL GLC 13.2353
870 1VDC FAD 13.5135
871 1JA9 NDP 14.2336
872 2DC1 NAD 14.4068
873 2EV9 NAP 14.4487
874 2EV9 SKM 14.4487
875 3ITJ FAD 14.497
876 3ITJ CIT 14.497
877 5FUB SAH 14.5401
878 3K7M FAD 14.6172
879 1L1E SAH 14.6341
880 4II2 ATP 14.7239
881 5L95 AMP 15
882 3LZW NAP 15.0602
883 3LZW FAD 15.0602
884 1P77 ATR 15.0735
885 3AD8 NAD 15.1515
886 3AD8 FAD 15.1515
887 3AD8 PYC 15.1515
888 5TZO 7V7 15.4255
889 3UIE ANP 15.5
890 4JNA FAD 15.5882
891 2GAG NAD 16.1616
892 2GAG FAD 16.1616
893 2GAG FOA 16.1616
894 2XYQ SAH 16.2069
895 1JAY NAP 16.9811
896 4Y9D NAI 17.377
897 1KSH GDP 17.7419
898 5Z20 NAI 18.5507
899 2VUT NAD 18.6047
900 4YSX FAD 18.617
901 2I5F 5IP 19.2661
902 3RNM FAD 20.6897
903 2DWU DGL 21.0145
904 1L7N ALF 21.327
905 2HMT NAI 22.9167
906 3B1J NAD 24
907 6GR0 F8W 25.2874
908 4M38 SAH 28.5714
909 5E8J SAH 34.0909
910 5C2N NAG 35.4167
911 3X0V FAD 36.2292
912 5TS5 FAD 41.3223
913 4IV9 FAD 46.4991
914 4IV9 TSR 46.4991
Pocket No.: 2; Query (leader) PDB : 5YB7; Ligand: ORN; Similar sites found with APoc: 919
This union binding pocket(no: 2) in the query (biounit: 5yb7.bio2) has 54 residues
No: Leader PDB Ligand Sequence Similarity
1 4C4A SAH 1.03448
2 2AQJ FAD 1.11524
3 2AQJ TRP 1.11524
4 5WXU FLC 1.25261
5 1GQ2 NAP 1.26126
6 1YQT ADP 1.30112
7 5YAP NAI 1.31579
8 5YAP 8S0 1.31579
9 2NPX FAD 1.34228
10 2NPX NAD 1.34228
11 3ABI NAD 1.36986
12 2JHP SAH 1.55172
13 3E1T FAD 1.5625
14 3OA2 NAD 1.57233
15 1MUU NAD 1.6055
16 1MV8 NAD 1.6055
17 5DNK SAH 1.62455
18 2J5V PCA 1.63488
19 5UAO FAD 1.66359
20 1BXK NAD 1.69014
21 2I3G NAP 1.70455
22 3GDN HBX 1.72414
23 3GDN FAD 1.72414
24 4A59 AMP 1.72414
25 5JWC FAD 1.72745
26 4YNU LGC 1.75131
27 4YNU FAD 1.75131
28 4CIB 7UZ 1.75824
29 4LJ9 ACP 1.76991
30 5AOV NAP 1.78571
31 3L4S NAD 1.78571
32 4B63 ORN 1.79641
33 4B63 FAD 1.79641
34 4B63 NAP 1.79641
35 2GCG NDP 1.81818
36 1M2W NAD 1.82556
37 6EL3 NAP 1.83727
38 3NJ4 NAD 1.83908
39 3A06 NDP 1.8617
40 1F8F NAD 1.88679
41 2WPF WPF 1.89655
42 2WPF FAD 1.89655
43 6H3O FAD 1.89655
44 1DJN ADP 1.89655
45 4TXI FAD 1.89655
46 1F52 ADP 1.92308
47 2XVF FAD 1.93966
48 1GEG NAD 1.95312
49 1Q19 APC 1.98807
50 1Q19 SSC 1.98807
51 2CDU ADP 1.99115
52 2CDU FAD 1.99115
53 1JQ3 AAT 2.02703
54 4XYB NDP 2.04604
55 1YQZ FAD 2.05479
56 1Q9I FAD 2.10158
57 1Q9I TEO 2.10158
58 1CER NAD 2.1148
59 5VN0 FAD 2.12355
60 5VN0 NAI 2.12355
61 4YT4 FE9 2.13333
62 4DCM SAM 2.13333
63 2XVE FAD 2.15517
64 2PK3 A2R 2.18069
65 1VM6 NAD 2.19298
66 5DN9 NAD 2.1978
67 2BRY FAD 2.21328
68 3FUU ADN 2.21402
69 1LDN NAD 2.21519
70 4M3P HCS 2.21675
71 5ZW3 SAH 2.22222
72 1SC6 NAD 2.22772
73 4LHD GLY 2.23805
74 1PL6 NAD 2.24719
75 1PL6 572 2.24719
76 3RFV 15L 2.24719
77 3LRE ADP 2.25352
78 5EB4 FAD 2.25564
79 1I36 NAP 2.27273
80