-->
Receptor
PDB id Resolution Class Description Source Keywords
5VKT 1.83 Å NON-ENZYME: OTHER CINNAMYL ALCOHOL DEHYDROGENASES (SBCAD4) FROM SORGHUM BICOLO MOENCH SORGHUM BICOLOR CINNAMYL ALCOHOL DEHYDROGENASES CAD SINAPYL ALCHOHL DEHYDRSAD SORGHUM DEHYDROGENASE NADP+ NADPH P-COUMARALDEHYDECONIFERALDEHYDE SINAPALDEHYDE OXIDOREDUCTASE
Ref.: THE ENZYME ACTIVITY AND SUBSTRATE SPECIFICITY OF TW CINNAMYL ALCOHOL DEHYDROGENASES IN SORGHUM (SORGHUM BICOLOR), SBCAD2 AND SBCAD4. PLANT PHYSIOL. V. 174 2128 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ZN A:402;
A:401;
B:401;
B:402;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
65.409 Zn [Zn+2...
NAP A:405;
Valid;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
FMT A:404;
Invalid;
none;
submit data
46.025 C H2 O2 C(=O)...
GOL A:403;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
ACT B:403;
Invalid;
none;
submit data
59.044 C2 H3 O2 CC(=O...
MLT A:406;
Invalid;
none;
submit data
134.087 C4 H6 O5 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5VKT 1.83 Å NON-ENZYME: OTHER CINNAMYL ALCOHOL DEHYDROGENASES (SBCAD4) FROM SORGHUM BICOLO MOENCH SORGHUM BICOLOR CINNAMYL ALCOHOL DEHYDROGENASES CAD SINAPYL ALCHOHL DEHYDRSAD SORGHUM DEHYDROGENASE NADP+ NADPH P-COUMARALDEHYDECONIFERALDEHYDE SINAPALDEHYDE OXIDOREDUCTASE
Ref.: THE ENZYME ACTIVITY AND SUBSTRATE SPECIFICITY OF TW CINNAMYL ALCOHOL DEHYDROGENASES IN SORGHUM (SORGHUM BICOLOR), SBCAD2 AND SBCAD4. PLANT PHYSIOL. V. 174 2128 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5VKT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5FI3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 5VKT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 1YQD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 1YQX - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5H81 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 5FI3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 5VKT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
4 1YQD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 1YQX - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 3TWO - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 123
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NHD 0.68254 0.958904
10 NJP 0.661417 0.972973
11 NFD 0.658915 0.934211
12 NXX 0.619048 0.959459
13 DND 0.619048 0.959459
14 AMP NAD 0.606061 0.958904
15 ZID 0.605839 0.972603
16 NAQ 0.59854 0.922078
17 ATR 0.59292 0.917808
18 NAE 0.591241 0.946667
19 NDE 0.58042 0.986301
20 A22 0.571429 0.958904
21 NAJ 0.567164 0.986111
22 A2R 0.563025 0.932432
23 NDC 0.561644 0.922078
24 NA7 0.552846 0.907895
25 ODP 0.551471 0.935065
26 A2P 0.539823 0.930556
27 8ID 0.537313 0.910256
28 NPW 0.525547 0.8875
29 NZQ 0.521739 0.910256
30 CNA 0.521739 0.959459
31 NDP 0.514493 0.922078
32 PO4 PO4 A A A A PO4 0.503937 0.930556
33 1DG 0.503401 0.922078
34 DG1 0.503401 0.922078
35 TXP 0.5 0.922078
36 NMN AMP PO4 0.492958 0.921053
37 XNP 0.492958 0.875
38 25L 0.492308 0.958904
39 25A 0.492063 0.972222
40 NMN 0.486726 0.888889
41 NGD 0.485714 0.935065
42 9JJ 0.481707 0.8875
43 2AM 0.477876 0.891892
44 ADP 0.458333 0.945205
45 PAP 0.451613 0.931507
46 A2D 0.445378 0.945205
47 AN2 0.442623 0.932432
48 7L1 0.441558 0.777778
49 ADP PO3 0.44 0.944444
50 SAP 0.44 0.896104
51 AGS 0.44 0.896104
52 M33 0.439024 0.906667
53 AR6 AR6 0.438849 0.945205
54 BA3 0.438017 0.945205
55 OAD 0.43609 0.92
56 ADP BMA 0.43609 0.92
57 DQV 0.435714 0.958904
58 HEJ 0.435484 0.945205
59 ATP 0.435484 0.945205
60 OOB 0.435115 0.958904
61 B4P 0.434426 0.945205
62 AP5 0.434426 0.945205
63 GAP 0.433071 0.92
64 0WD 0.432432 0.922078
65 2A5 0.432 0.87013
66 5FA 0.432 0.945205
67 AQP 0.432 0.945205
68 AT4 0.430894 0.907895
69 00A 0.428571 0.909091
70 DAL AMP 0.427481 0.932432
71 CA0 0.427419 0.92
72 ADP ALF 0.426357 0.871795
73 ALF ADP 0.426357 0.871795
74 9X8 0.425373 0.871795
75 ACP 0.424 0.92
76 NAJ PZO 0.423841 0.897436
77 9SN 0.423358 0.897436
78 ADP VO4 0.423077 0.932432
79 VO4 ADP 0.423077 0.932432
80 WAQ 0.422222 0.884615
81 V3L 0.421875 0.945205
82 ACQ 0.421875 0.92
83 ADQ 0.421053 0.92
84 AR6 0.420635 0.918919
85 APR 0.420635 0.918919
86 ATP A A A 0.42029 0.958333
87 CO7 0.419753 0.786517
88 3OD 0.419118 0.92
89 1ZZ 0.419118 0.841463
90 DLL 0.41791 0.958904
91 AD9 0.417323 0.92
92 NAX 0.416667 0.875
93 OVE 0.416667 0.857143
94 MYR AMP 0.416058 0.841463
95 AV2 0.415385 0.868421
96 A3P 0.414634 0.944444
97 NNR 0.414414 0.72973
98 OMR 0.413793 0.831325
99 6YZ 0.412214 0.92
100 ANP 0.410853 0.92
101 A1R 0.410448 0.860759
102 ABM 0.409836 0.893333
103 A 0.408333 0.944444
104 AMP 0.408333 0.944444
105 SON 0.408 0.933333
106 PPS 0.407692 0.829268
107 5AL 0.407692 0.932432
108 NAI 0.406897 0.909091
109 7D3 0.406504 0.857143
110 ADX 0.404762 0.829268
111 ATF 0.40458 0.907895
112 3UK 0.404412 0.945946
113 TYR AMP 0.404255 0.921053
114 AMP DBH 0.404255 0.894737
115 139 0.402685 0.875
116 50T 0.401575 0.906667
117 SRP 0.401515 0.907895
118 A A 0.40146 0.972222
119 B5V 0.40146 0.933333
120 A3R 0.4 0.860759
121 3AM 0.4 0.90411
122 B5M 0.4 0.921053
123 FA5 0.4 0.933333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5VKT; Ligand: NAP; Similar sites found with APoc: 604
This union binding pocket(no: 1) in the query (biounit: 5vkt.bio1) has 31 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO5 PIH None
2 4MDB RLT None
3 1UO4 PIH None
4 1X87 NAD 1.10497
5 3WQQ NDP 1.10497
6 3WQQ IB3 1.10497
7 1U8X NAD 1.10497
8 5X20 NAD 1.28205
9 5GSN NAP 1.38122
10 1PN0 IPH 1.38122
11 1PN0 FAD 1.38122
12 4UHF BUA 1.41844
13 3HQ9 OXL 1.44928
14 1RM4 NDP 1.48368
15 5MIT NAP 1.52905
16 5MIT FAD 1.52905
17 1OMO NAD 1.5528
18 1LTH NAD 1.5674
19 1EZ4 NAD 1.57233
20 1C3V NDP 1.63265
21 4KP7 NAP 1.63934
22 4KP7 1UQ 1.63934
23 5X9D 80F 1.64474
24 1CER NAD 1.65746
25 4YCA NDP 1.65746
26 1K1Y MAL 1.65746
27 1YKJ PHB 1.65746
28 1YKJ FAD 1.65746
29 1TB4 PEJ 1.65746
30 4Z24 FAD 1.65746
31 1YS4 NAP 1.69492
32 2I3G NAP 1.70455
33 6GKV F2W 1.7094
34 5XK9 DMA 1.72414
35 3BP1 GUN 1.72414
36 4D42 W0I 1.77305
37 4D42 NAP 1.77305
38 4E5N NAD 1.81818
39 4JGP PYR 1.84332
40 4BGB ADP 1.84615
41 5Z2F NAP 1.88679
42 1DKU AP2 1.89274
43 2F5X ASP 1.92308
44 4BVA NDP 1.9337
45 4BVA T3 1.9337
46 1LVL NAD 1.9337
47 1T3D CYS 1.9337
48 1SAY PYR 1.93906
49 1UI0 URA 1.95122
50 3H9E NAD 2.02312
51 5OCM NAP 2.06186
52 4MP8 MLI 2.0649
53 4MP8 NAD 2.0649
54 5AOA PPI 2.0979
55 5NUF NAD 2.10843
56 5NUE NAD 2.10843
57 3LZW NAP 2.10843
58 3LZW FAD 2.10843
59 4E13 NAD 2.12014
60 4FC7 NAP 2.16606
61 4FC7 COA 2.16606
62 5GZ6 NDP 2.20994
63 5GZ6 7C3 2.20994
64 1VJT NAD 2.20994
65 1YY5 FAD 2.20994
66 4J36 1HR 2.20994
67 4J36 FAD 2.20994
68 4JDR FAD 2.20994
69 4ZCC FAD 2.20994
70 4ZCC NAI 2.20994
71 1RM0 D6P 2.20994
72 5XWV 8H6 2.20994
73 6A3J NAI 2.20994
74 5YAP NAI 2.20994
75 1RM0 NAI 2.20994
76 5YAP 8S0 2.20994
77 6A3J SOE 2.20994
78 3KLJ FAD 2.20994
79 5XWV NDP 2.20994
80 3CGB FAD 2.20994
81 2CDU ADP 2.21239
82 2CDU FAD 2.21239
83 2AG8 NAP 2.28137
84 3ITJ CIT 2.36686
85 4MDH NAD 2.39521
86 5MDH NAD 2.4024
87 2HJR APR 2.43902
88 1LUA NAP 2.43902
89 5A1T NAI 2.48619
90 5A1T OXM 2.48619
91 1X14 NAD 2.48619
92 5UAV TFB 2.48619
93 5UAV NDP 2.48619
94 1PJS NAD 2.48619
95 1UP7 NAD 2.48619
96 1GR0 NAD 2.48619
97 5MBX FAD 2.48619
98 5MBX SP5 2.48619
99 2BKX F6R 2.48619
100 1O0S NAI 2.48619
101 2B9W FAD 2.48619
102 4X9M FAD 2.48619
103 3ZNN FAD 2.48619
104 3ZNN 4WL 2.48619
105 4KQW NAP 2.48619
106 1N1G BCP 2.48619
107 5MPT SAH 2.48619
108 3GD4 NAD 2.48619
109 1KJ8 GAR 2.48619
110 5MZI FYK 2.48619
111 5MZI FAD 2.48619
112 5JCA FAD 2.48619
113 5JCA NDP 2.48619
114 3AB1 FAD 2.5
115 3SQP FAD 2.51046
116 2RI1 GLP 2.55319
117 1WPQ NAD 2.5788
118 5UR0 NAD 2.5788
119 5TTJ FAD 2.65306
120 5A04 BGC 2.65487
121 5A04 NDP 2.65487
122 2BDG PBZ 2.69058
123 2DM6 NAP 2.7027
124 2DM6 IMN 2.7027
125 2GLX NDP 2.71084
126 2VYN NAD 2.71903
127 6GAS FAD 2.71903
128 1GAD NAD 2.72727
129 1M0S CIT 2.73973
130 1RYD NDP 2.76243
131 1Z82 NDP 2.76243
132 1H6C NDP 2.76243
133 4XDZ NDP 2.76243
134 1H6C SIN 2.76243
135 3CIF NAD 2.76243
136 1OFL NGK GCD 2.76243
137 5FJN FAD 2.76243
138 5FJN BE2 2.76243
139 3CGD FAD 2.76243
140 1Q0H NDP 2.76243
141 3CGD COA 2.76243
142 3CGD NAD 2.76243
143 1Q0H FOM 2.76243
144 1VBH PEP 2.76243
145 3CIF G3H 2.76243
146 5CAE SIN 2.76243
147 1OBB NAD 2.76243
148 5CAE COA 2.76243
149 3AYI FAD 2.76243
150 3AYI HCI 2.76243
151 4M3P HCS 2.76243
152 4NTD FAD 2.76243
153 2VT3 ATP 2.7907
154 5LD5 NAD 2.7933
155 2ZB3 NDP 2.83286
156 1X7D ORN 2.85714
157 1X7D NAD 2.85714
158 3NGL NAP 2.89855
159 1HSL HIS 2.94118
160 3V1Y NAD 2.96736
161 4Z0H NAD 2.99401
162 5OJL TXP 3.03867
163 1F8G NAD 3.03867
164 5XVH NAP 3.03867
165 5I39 FAD 3.03867
166 5E4R NAP 3.03867
167 2B4R NAD 3.03867
168 2B4R AES 3.03867
169 2BGM NAJ 3.03867
170 3H8V ATP 3.03867
171 2EV9 SKM 3.04183
172 2EV9 NAP 3.04183
173 1K3T BRZ 3.06407
174 2QZZ EMF 3.14465
175 2QZZ NAP 3.14465
176 1ZQ9 SAM 3.15789
177 5KKA 6V0 3.20513
178 1GUZ NAD 3.22581
179 1UXG NAD 3.23625
180 1UXG FUM 3.23625
181 1P77 ATR 3.30882
182 4RDH AMP 3.31492
183 4D79 ATP 3.31492
184 4RDI ATP 3.31492
185 4XDY NAI 3.31492
186 4ZUL UN1 3.31492
187 5BUK FAD 3.31492
188 1U1I NAD 3.31492
189 6AA8 NAD 3.31492
190 5G3U FDA 3.31492
191 4RSL FAD 3.31492
192 5G3U ITW 3.31492
193 3U4C NDP 3.31492
194 2QA1 FAD 3.31492
195 2GSD NAD 3.31492
196 2NAD NAD 3.31492
197 4MUS LY0 3.31754
198 1PZG A3D 3.32326
199 4DPL NAP 3.34262
200 4Q9N NAI 3.3557
201 2DC1 NAD 3.38983
202 1B74 DGN 3.54331
203 4B7X NAP 3.57143
204 2BZ1 TAU 3.57143
205 2OOR NAD 3.59116
206 5M67 NAD 3.59116
207 5M67 ADE 3.59116
208 5M67 3D1 3.59116
209 3A06 NDP 3.59116
210 1GZ4 ATP 3.59116
211 2O4C NAD 3.59116
212 1LJ8 NAD 3.59116
213 3S5W NAP 3.59116
214 3A06 FOM 3.59116
215 1M2W NAD 3.59116
216 5GUD NDP 3.59116
217 5GUD 2IT 3.59116
218 5XWC 2IT 3.59116
219 5XWC 8GL 3.59116
220 5XWC NAP 3.59116
221 2QRK AMP 3.59116
222 4U8P FDA 3.59116
223 4U8P UDP 3.59116
224 4AP3 FAD 3.59116
225 4AP3 NAP 3.59116
226 2IVD FAD 3.59116
227 2DKH FAD 3.59116
228 4EUE NAI 3.59116
229 1L7E NAI 3.59116
230 4MIG G3F 3.59116
231 2E5V FAD 3.59116
232 3CMC NAD 3.59281
233 3WBF NAP 3.60656
234 3WBF API 3.60656
235 4Y9D NAI 3.60656
236 1KYQ NAD 3.64964
237 1DRV A3D 3.663
238 1PR9 NAP 3.68852
239 3D3W NAP 3.68852
240 3RC1 NAP 3.71429
241 1JAY NAP 3.77358
242 4UP3 NDP 3.82166
243 1FLJ GSH 3.84615
244 3ABI NAD 3.8674
245 3NJ4 NAD 3.8674
246 3NJ4 AFX 3.8674
247 1ZH8 NAP 3.8674
248 1MUU NAD 3.8674
249 1H82 GZZ 3.8674
250 1H82 FAD 3.8674
251 3ULK NDP 3.8674
252 2NU8 COA 3.8674
253 1J0X NAD 3.8674
254 2VVM FAD 3.8674
255 5J5Z FAD 3.8674
256 2VVL FAD 3.8674
257 3C1O NAP 3.8674
258 1O5O U5P 3.8674
259 2RGJ FAD 3.8674
260 2ZB4 NAP 3.92157
261 2ZB4 5OP 3.92157
262 2F1K NAP 3.94265
263 1O6Z NAD 3.9604
264 1BDB NAD 3.97112
265 2GZ3 NAP 4.09836
266 4PLG OXM 4.14365
267 4PLG NAI 4.14365
268 1MV8 NAD 4.14365
269 2VHW NAI 4.14365
270 4R5M NAP 4.14365
271 2YVF NAD 4.14365
272 2YVF FAD 4.14365
273 1J5P NAD 4.14365
274 1RYI GOA 4.14365
275 4YT4 FE9 4.14365
276 1RYI FAD 4.14365
277 1DSS NAD 4.14365
278 2AWN ADP 4.14365
279 3CTY FAD 4.14365
280 3ETG GLU 4.14365
281 3ETG NDP 4.14365
282 3ETG GTP 4.14365
283 5TS5 FAD 4.14365
284 4R5M 4NO 4.14365
285 4EDF UPG 4.14365
286 1VI2 NAD 4.14365
287 2PZI AXX 4.14365
288 5FFF NAP 4.14365
289 2WPF FAD 4.14365
290 5OC1 FAD 4.14365
291 2WPF WPF 4.14365
292 6CEP NAD 4.19162
293 6CEP OXM 4.19162
294 1J49 NAD 4.2042
295 1B8U NAD 4.25532
296 1B8U OAA 4.25532
297 2CUL FAD 4.31034
298 5ZI2 NAD 4.34783
299 5ZI2 ADP 4.34783
300 2A92 NAI 4.36137
301 4YAC NAI 4.3771
302 5YEC ATP 4.41176
303 2DT5 NAD 4.41989
304 5EXK MET 4.41989
305 4XYB NDP 4.41989
306 2PV7 NAD 4.41989
307 2C7G FAD 4.41989
308 2C7G ODP 4.41989
309 1NM5 NAD 4.4335
310 2WQ4 SFU 4.48718
311 1LDM NAD 4.55927
312 4JLS 3ZE 4.60526
313 4XB2 NDP 4.69613
314 1HKU NAD 4.69613
315 4XQC 13D 4.69613
316 4OOE FOM 4.69613
317 4OOE NDP 4.69613
318 4XQC NAD 4.69613
319 4XB2 HSE 4.69613
320 4GUS FAD 4.69613
321 4FWE FAD 4.69613
322 4HSU FAD 4.69613
323 4GUT FAD 4.69613
324 3AXB FAD 4.69613
325 3AXB PRO 4.69613
326 3DDN HPV 4.69613
327 2Z49 AMG 4.69613
328 1MO9 KPC 4.69613
329 4MOP 2H5 4.69613
330 1MO9 FAD 4.69613
331 4MUQ LY0 4.70588
332 5TC4 NAD 4.74684
333 4II2 ATP 4.81928
334 1WQ1 AF3 4.81928
335 2HMT NAI 4.86111
336 5G4L NDP 4.8951
337 2BD0 NAP 4.91803
338 1WOG 16D 4.91803
339 1YJQ NAP 4.9505
340 3QJ4 FAD 4.97076
341 1V8B NAD 4.97238
342 5N2I NAP 4.97238
343 5Z21 NAI 4.97238
344 3B6Z CO7 4.97238
345 1PS9 NAP 4.97238
346 3HAD NAD 4.97238
347 2ZXI FAD 4.97238
348 5NA1 FAD 4.97238
349 1PS9 FAD 4.97238
350 5TUF TDC 4.97238
351 5TUF FAD 4.97238
352 4TXI FAD 4.97238
353 5N6C NAD 5
354 1A5Z NAD 5.01567
355 5BSH PRO 5.05415
356 5T9E NAP 5.16605
357 1NPD NAD 5.20833
358 5L53 NAP 5.24691
359 2YYY NAP 5.24781
360 4ZGS NAD 5.24862
361 2IID FAD 5.24862
362 2IID PHE 5.24862
363 3OND NAD 5.24862
364 3OND ADN 5.24862
365 1P31 EPU 5.24862
366 5ZI9 FLC 5.24862
367 4HA6 FAD 5.24862
368 1G51 AMP 5.24862
369 4CJX NAP 5.32915
370 4KOA NDP 5.40541
371 6A0S HSE 5.42169
372 6A0S NDP 5.42169
373 1HDG NAD 5.42169
374 1SC6 NAD 5.44554
375 4CSD MFU 5.51471
376 1DLJ UGA 5.52486
377 1DLJ NAI 5.52486
378 1QMG APX 5.52486
379 1RSG FAD 5.52486
380 2PK3 A2R 5.52486
381 4D04 NAP 5.52486
382 4D04 FAD 5.52486
383 5JE8 NAD 5.62914
384 3KB6 NAD 5.68862
385 1NVM NAD 5.7971
386 1F06 2NP 5.80111
387 1F06 NDP 5.80111
388 5U5G NAP 5.80111
389 2RAB NAD 5.80111
390 2RAB FAD 5.80111
391 2JB2 PHE 5.80111
392 2JB2 FAD 5.80111
393 1EBF NAD 5.86592
394 5K4W THR 5.919
395 5K4W NAI 5.919
396 4D3F NAP 6.07735
397 1C1X NAD 6.07735
398 1BXG NAD 6.07735
399 1BW9 NAD 6.07735
400 1ZK7 FAD 6.07735
401 4TSK NDP 6.07735
402 1REO FAD 6.07735
403 3C7A NAD 6.07735
404 1FS5 TLA 6.07735
405 4M52 FAD 6.07735
406 3NKS FAD 6.07735
407 6F3N ADN 6.14407
408 6F3N NAD 6.14407
409 1UJ5 5RP 6.1674
410 2CVZ NDP 6.22837
411 6F3M NAD 6.30435
412 2V57 PRL 6.31579
413 2HK9 NAP 6.35359
414 2HK9 ATR 6.35359
415 4PLT NAI 6.35359
416 2XZ9 PYR 6.35359
417 6C4T NA7 6.35359
418 4PLT OXM 6.35359
419 3GGO NAI 6.35359
420 3GGO ENO 6.35359
421 2AHR NAP 6.35359
422 1O8B ABF 6.35359
423 5JWC FAD 6.35359
424 1HYE NAP 6.38978
425 2YVJ NAI 6.42202
426 5U5N NAD 6.45161
427 1VM6 NAD 6.57895
428 5YU3 PRO 6.62983
429 5YU3 NAD 6.62983
430 6C4M NAP 6.62983
431 4IV9 TSR 6.62983
432 5BWD FUM 6.66667
433 5Y8L HUI 6.77966
434 5Y8L NAD 6.77966
435 3B1F NAD 6.89655
436 1LSS NAD 6.90608
437 2ZJ1 ARJ 6.90608
438 2GCG NDP 6.90608
439 2ZJ1 NAD 6.90608
440 1SOW NAD 6.90608
441 5Z20 NAI 6.90608
442 1UWK URO 6.90608
443 1UWK NAD 6.90608
444 2Z3Y F2N 6.90608
445 1Y8Q ATP 6.90608
446 5U8U FAD 6.90608
447 2HQM FAD 6.90608
448 4WOE 3S5 6.90608
449 1WP4 NDP 6.92042
450 2GAG NAD 7.07071
451 1GV0 NAD 7.18232
452 5TOW ADN 7.18232
453 5TOW NAI 7.18232
454 5AOV NAP 7.18232
455 3AD8 NAD 7.18232
456 2DWU DGL 7.24638
457 2GN4 UD1 7.26744
458 2GN4 NDP 7.26744
459 2Q0L NAP 7.3955
460 1E5Q NDP 7.45856
461 3EF0 ALF 7.45856
462 1GQ2 NAP 7.45856
463 1PGP 6PG 7.45856
464 1COY FAD 7.45856
465 1YQZ FAD 7.45856
466 3QWB NDP 7.48503
467 4B4U NAP 7.59076
468 5EES NAP 7.69231
469 4JK3 NAD 7.72201
470 4J4H NAI 7.72201
471 4J4H 1J1 7.72201
472 1WDK NAD 7.73481
473 2G5C NAD 7.82918
474 2CVQ NDP 7.95107
475 1DJN ADP 8.01105
476 5AYV NAP 8.01105
477 5BVA FAD 8.01105
478 5AYV KPL 8.01105
479 6BII NAP 8.10811
480 1XHC FAD 8.17439
481 1KC7 PPR 8.28729
482 6BFN DL1 8.47953
483 5F7U GLC GLC 8.56354
484 2R4J 13P 8.56354
485 2R4J FAD 8.56354
486 5NXX 3Q7 8.58209
487 1DCP HBI 8.65385
488 5W3K NDP 8.83978
489 5W3K 9TY 8.83978
490 1V59 NAD 8.83978
491 1V59 FAD 8.83978
492 1ON3 DXX 8.83978
493 6ER9 FAD 8.83978
494 6ER9 NAP 8.83978
495 2PD4 DCN 9.09091
496 2PD4 NAD 9.09091
497 4ZVV GN0 9.11602
498 4ZVV NAD 9.11602
499 2FR1 NDP 9.39227
500 4L8V NAP 9.39227
501 3B20 NAD 9.43953
502 3B1J NAD 9.43953
503 3FZG SAM 9.5
504 5TWB FAD 9.59302
505 3ICT ADP 9.66851
506 3ICS ADP 9.66851
507 1EYQ NAR 9.66851
508 3BAZ NAP 9.90991
509 2UVO NAG 9.94152
510 6C4N NAP 9.94475
511 3FWN ATR 9.94475
512 1CF2 NAP 10.3858
513 9LDB NAD 10.4972
514 9LDT NAD 10.4972
515 1DIG NAP 10.4972
516 3NYC IAR 10.4972
517 3NYC FAD 10.4972
518 1DIG L37 10.4972
519 4CQM NAP 10.6557
520 1HYH NAD 10.6796
521 2NVK NAP 10.7735
522 1F8Y 5MD 10.828
523 1T26 GBD 10.8696
524 1T26 NAI 10.8696
525 2F5Z FAD 10.9375
526 4OM8 NAD 11.0032
527 4YSX FAD 11.0497
528 1LDN NAD 11.0759
529 2IZ1 ATR 11.326
530 1V6A TRE 11.326
531 4XZ3 COA 11.326
532 5VN0 NAI 11.326
533 4WAS COO 11.6022
534 5T9F TYR 11.6022
535 5T9F NAP 11.6022
536 4WAS NAP 11.6022
537 1O94 ADP 11.7424
538 1JNR FAD 12
539 3RNM FAD 12.069
540 3QV1 NAD 12.1951
541 2DBZ NAP 12.2754
542 2D2I NAP 12.4309
543 5ZIC BMA Z4Y NAG 12.4309
544 3WGT FAD 12.4309
545 3WGT QSC 12.4309
546 4YRY FAD 12.6812
547 2J8Z NAP 12.9834
548 3T31 FAD 12.9834
549 3T31 DCQ 12.9834
550 3VPH OXM 13.2258
551 3VPH NAD 13.2258
552 1NVT NAP 13.2404
553 5SXS NIZ 13.5359
554 5L95 AMP 13.75
555 1PTR PRB 14
556 2B5W NAP 14.8459
557 2NPX NAD 14.9171
558 1KOL NAD 15.7459
559 6F7X MFU 16.6667
560 1FWV SGA MAG FUC 17.1642
561 2BOS GLA GAL GLC NBU 17.6471
562 2BOS GLA GAL GLC 17.6471
563 1NYT NAP 19.0608
564 1YB5 NAP 19.6581
565 5ZZ6 NAD 20.1923
566 5ZZ6 ADP 20.1923
567 1KEV NDP 20.442
568 4A0S NAP 21.2707
569 2JHF NAD 22.0994
570 1YKF NAP 22.0994
571 1U3U NAD 22.3757
572 1U3U BNF 22.3757
573 1PL6 NAD 22.9282
574 1PL6 572 22.9282
575 3JYN NDP 23.0769
576 1N9G NAP 23.7569
577 2FZW NAD 25.4144
578 1E3I CXF 26.2431
579 1P0F NAP 27.0718
580 3GFB NAD 27.0718
581 4RVU NDP 27.0718
582 1JQY A32 27.1845
583 1LT3 GAL BGC 27.1845
584 4JBI NDP 27.9006
585 2DFV NAD 28.453
586 1D1T NAD 29.558
587 1CDO NAD 30.1105
588 2CDC XYP 30.1105
589 2CDC XYS 30.1105
590 2CDC NAP 30.1105
591 5EIN NAP 33.3333
592 4RQU NAD 34.8066
593 1F8F NAD 35.3591
594 1R37 NAD 38.3285
595 1R37 ETX 38.3285
596 5O9F NAD 41.1932
597 5O9F 9ON 41.1932
598 4W6Z 8ID 42.0749
599 4W6Z ETF 42.0749
600 3WLE NAD 42.8153
601 1H2B NAJ 45.4039
602 4GKV NAD 47.0238
603 1RJW ETF 48.9676
604 1LLU NAD 49.4152
Pocket No.: 2; Query (leader) PDB : 5VKT; Ligand: NAP; Similar sites found with APoc: 11
This union binding pocket(no: 2) in the query (biounit: 5vkt.bio2) has 32 residues
No: Leader PDB Ligand Sequence Similarity
1 4EVQ PHB 1.38122
2 5H6S HDH 1.38122
3 4WNP 3RJ 2.43902
4 1KZL CRM 2.88462
5 4O1M NAD 3.1746
6 1W8D NAP 3.8674
7 4KBA 1QM 4.41989
8 2XKO AKG 5.61798
9 4JGT PYR 6.68896
10 4QXB OGA 9.11854
11 2UVO NDG 9.94152
APoc FAQ
Feedback