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Receptor
PDB id Resolution Class Description Source Keywords
5VGR 2.1 Å NON-ENZYME: OTHER HUMAN ATLASTIN-3, GDP-BOUND HOMO SAPIENS G PROTEINS GTPASE MEMBRANE FUSION HYDROLASE
Ref.: TIMING AND RESET MECHANISM OF GTP HYDROLYSIS-DRIVEN CONFORMATIONAL CHANGES OF ATLASTIN. STRUCTURE V. 25 997 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP B:501;
A:501;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5VGR 2.1 Å NON-ENZYME: OTHER HUMAN ATLASTIN-3, GDP-BOUND HOMO SAPIENS G PROTEINS GTPASE MEMBRANE FUSION HYDROLASE
Ref.: TIMING AND RESET MECHANISM OF GTP HYDROLYSIS-DRIVEN CONFORMATIONAL CHANGES OF ATLASTIN. STRUCTURE V. 25 997 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 6B9D - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 6B9E - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 6B9F - GDP ALF n/a n/a
4 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 4IDQ - GDP ALF n/a n/a
6 4IDO - GDP ALF n/a n/a
7 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 6B9D - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 6B9E - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 6B9F - GDP ALF n/a n/a
4 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 4IDQ - GDP ALF n/a n/a
6 4IDO - GDP ALF n/a n/a
7 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5VGR; Ligand: GDP; Similar sites found with APoc: 567
This union binding pocket(no: 1) in the query (biounit: 5vgr.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 1W5T ANP 0.928074
2 1W5T ADP 0.928074
3 1VG8 GNP 0.966184
4 1VG1 GDP 1.08108
5 4IEE AGS 1.16009
6 1KK1 GNP 1.21951
7 6AU6 GDP 1.32626
8 4IHQ ADP 1.39211
9 1X6V ADP 1.39211
10 1TQ4 GDP 1.45278
11 5TSH ADP 1.62413
12 5TSH ANP 1.62413
13 1SKQ GDP 1.62413
14 1IHU AF3 1.62413
15 1IHU ADP 1.62413
16 3NHB ADP 1.63399
17 1XP8 AGS 1.63934
18 5KSZ GCP 1.65094
19 2NCD ADP 1.66667
20 2I4I AMP 1.67866
21 3BFX A3P 1.68919
22 2QEN ADP 1.71429
23 1F9V ADP 1.72911
24 3DC4 ADP 1.74419
25 2IYL GDP 1.76056
26 1J78 OLA 1.85615
27 4TTQ ATP 1.86047
28 3COB ADP 1.89702
29 3DEF GDP 1.9084
30 2RCN GDP 1.95531
31 4BAS GNP 2.01005
32 1D2E GDP 2.01511
33 2BVN GNP 2.03562
34 1D8T GDP 2.03562
35 1G3M PCQ 2.04082
36 1G3M A3P 2.04082
37 1YQT ADP 2.08817
38 1XKV ATP 2.08817
39 1SVM ATP 2.08817
40 5YV5 ADP 2.08817
41 1QHG ATP 2.08817
42 4YS0 ADP 2.08817
43 6B4K ANP 2.09302
44 3TK1 GDP 2.12121
45 4Q1A 2XZ 2.14286
46 4Q1A UDP 2.14286
47 3DZD ADP 2.17391
48 4R98 GNH 2.21402
49 1YZG GDP 2.23464
50 4QOS ADP 2.26415
51 2ZR9 DTP 2.29226
52 3R7F CP 2.30263
53 5EXT ADP 2.30769
54 2DPY ADP 2.32019
55 4DCT GDP 2.32019
56 2FAH GDP 2.32019
57 1MKY GDP 2.32019
58 1X8J A3P 2.32019
59 1A99 PUT 2.32558
60 1G6H ADP 2.33463
61 5MZN ADP 2.4032
62 2J5V PCA 2.45232
63 4HSE ADP 2.51889
64 2PL3 ADP 2.54237
65 4AG5 ADP 2.55102
66 4H1V GNP 2.5522
67 1QF5 RPL 2.5522
68 1QF5 GDP 2.5522
69 1QF9 C5P 2.57732
70 1QF9 ALF 2.57732
71 1QF9 ADP 2.57732
72 2WIC GNP 2.62172
73 5KUT GDP 2.6455
74 5UQW GDP 2.6455
75 5E5U MLI 2.65152
76 3P4X ADP 2.66344
77 2B8T THM 2.69058
78 1FP6 ADP 2.76817
79 2BO4 FLC 2.77078
80 2GKS ADP 2.78422
81 3FYH ADP 2.79503
82 1XMV ADP 2.80899
83 1X1R GDP 2.80899
84 1GOJ ADP 2.8169
85 4BFW ZVW 2.83019
86 4U00 ADP 2.86885
87 3BOS CDP 2.89256
88 2RGX AP5 2.91262
89 1D2N ANP 2.94118
90 5G48 1FL 2.94118
91 3BFV ADP 2.95203
92 3RAB GNP 2.95858
93 3ITJ CIT 2.95858
94 5U32 GDP 2.9661
95 1U8Z GDP 2.97619
96 4NE2 ADP 2.99401
97 4NE2 SH2 2.99401
98 2QG6 NMN 3.01508
99 4R43 GDP 3.01624
100 2IS6 ADP 3.01624
101 2ZPA ADP 3.01624
102 1NST A3P 3.01624
103 6B8B ADP 3.01624
104 5OCG GNP 3.01624
105 3B7G ANP 3.04348
106 2A5F GTP 3.10881
107 3KJI ADP 3.14961
108 5BQ5 ADP BEF 3.1746
109 3QKT ANP 3.24484
110 5Y6N ADP 3.24826
111 4A4Z ANP 3.24826
112 1OS1 PYR 3.24826
113 1OS1 ATP 3.24826
114 2X7I CIT 3.24826
115 5ZXD ATP 3.2967
116 6CS8 F9Y 3.30033
117 1MR3 G3D 3.31492
118 1E2K TMC 3.32326
119 1RJ9 GCP 3.33333
120 2OG2 MLI 3.34262
121 3FVQ ATP 3.34262
122 4FRZ ADP 3.36788
123 3ZQ6 ADP ALF 3.39506
124 2XZ9 PYR 3.39506
125 2GDJ ANP 3.40909
126 4OI4 ATP 3.47826
127 4NCN GTP 3.48028
128 1VKJ A3P 3.50877
129 1ZC3 GNP 3.53982
130 2HCJ GDP 3.58209
131 3BER AMP 3.61446
132 1S9D GDP 3.65854
133 4CVN ADP 3.66492
134 2AWN ADP 3.67454
135 2GWH A3P 3.69128
136 1YTM ATP 3.7123
137 2WJG GDP 3.7234
138 2A9K GDP 3.74332
139 1YZN GNP 3.78378
140 4UXH T5A 3.80435
141 2Q2Y ADP 3.81471
142 2Q2Y MKR 3.81471
143 1B0U ATP 3.81679
144 3A4M ADP 3.84615
145 4D81 ADP 3.88693
146 1PUJ GNP 3.90071
147 5LB3 ADP 3.94432
148 2CE7 ADP 3.94432
149 1NJF ADP 3.94432
150 1NJF AGS 3.94432
151 4PJ3 ANP 3.94432
152 4ZDJ UTP 3.94432
153 5I34 GDP 3.94432
154 5TIV A3P 3.95257
155 1S8F GDP 3.9548
156 2WOJ ADP ALF 3.9548
157 3ZS9 ADP ALF 3.9548
158 1OXV ANP 3.96601
159 1SVK ALF GDP 3.96601
160 3B9Q MLI 3.97351
161 4BQS K2Q 3.97727
162 4BQS ADP 3.97727
163 2CDN ADP 3.9801
164 2VVG ADP 4
165 5XKT GNP 4
166 5N69 ADP 4.0201
167 3VX3 ADP 4.03226
168 5ZB0 TYD 4.0404
169 5ZB0 ADP 4.0404
170 1UPT GTP 4.09357
171 5X40 ACP 4.10959
172 5CK5 GDP 4.11392
173 1R2Q GNP 4.11765
174 3REF GDP 4.12371
175 4HA6 FAD 4.13386
176 1NY5 ADP 4.13437
177 3Q85 GNP 4.14201
178 2O0J ADP 4.15584
179 3MJH GTP 4.16667
180 1G6O ADP 4.24242
181 1Y3A GDP 4.25532
182 1M7G AV2 4.2654
183 1M7G ADP 4.2654
184 1M7G ADX 4.2654
185 3ZFD ANP 4.2735
186 2BEK ATP 4.28016
187 2YOH WMJ 4.28571
188 1MH1 GNP 4.30108
189 2BME GNP 4.30108
190 2OM2 GDP 4.30769
191 1WF3 GNP 4.31894
192 2OFW ADX 4.32692
193 1G4U GDP 4.34783
194 1QHH ATP 4.34783
195 1GWN GTP 4.39024
196 5HR5 ADP 4.40835
197 3BD9 A3P 4.40835
198 1T8U UAP SGN IDS SGN 4.41176
199 1T8U A3P 4.41176
200 1BH2 GSP 4.44444
201 3AB3 GDP 4.47154
202 6BSX E7S 4.49438
203 2FJU GSP 4.49438
204 6BSX GDP 4.49438
205 5O74 GDP 4.56853
206 4YMU ATP 4.58333
207 1S3G AP5 4.60829
208 4MKF AP5 4.60829
209 4NON GDP 4.61538
210 5BYK OAQ 4.6332
211 5BYK A3P 4.6332
212 5FG3 GDP 4.64037
213 3EC1 GDP 4.64037
214 1Z6T ADP 4.64037
215 1RRC ADP 4.65116
216 4DID GDP 4.66321
217 1L2T ATP 4.68085
218 2CJW GDP 4.6875
219 1Z08 GNP 4.70588
220 1A4R GNH 4.71204
221 1A4R GDP 4.71204
222 5M04 GDP 4.72222
223 5KSP GDP 4.73684
224 1KAO GDP 4.79042
225 5BN3 ADP 4.80769
226 1O3Y GTP 4.81928
227 4M9Q GNP 4.84582
228 2BCG GDP 4.85437
229 1JJV ATP 4.85437
230 2W2X GSP 4.86486
231 1SQ5 ADP 4.87239
232 1NHX FTB 4.87239
233 1W7J ADP BEF 4.87239
234 1NHX PEP 4.87239
235 2GMV UN8 4.87239
236 2GMV PEP 4.87239
237 1M7B GTP 4.8913
238 2QQ0 ANP 4.8913
239 2QQ0 THM 4.8913
240 2ZEJ GDP 4.8913
241 2QQ0 TMP 4.8913
242 2QQ0 ADP 4.8913
243 5L3W GDP 4.90196
244 4DDY DN6 4.94297
245 1FZQ GDP 4.97238
246 2GCO GNP 4.97512
247 2GCN GDP 4.97512
248 1JJ7 ADP 5
249 5WRI A3P 5
250 4HI0 GDP 5.02513
251 2Z5F A3P 5.03356
252 1LVG ADP 5.05051
253 1ZIN AP5 5.06912
254 4MKG AP5 5.06912
255 2C3H GLC GLC 5.10204
256 5Z69 AGS 5.10753
257 2ORV 4TA 5.12821
258 2HT6 GDP 5.17241
259 2D2F ADP 5.2
260 5YT0 GDP 5.21978
261 4B47 GDP 5.23416
262 4R2I ANP 5.2381
263 5WRJ A3P 5.28053
264 2JJK R15 5.32544
265 5ZBR ANP 5.33333
266 1G7S GDP 5.33643
267 3SBD GNP 5.34759
268 1DAK ADP 5.35714
269 1DAK DPU 5.35714
270 1V8K ANP 5.36585
271 2QTV GNP 5.38922
272 4D0N GDP 5.40541
273 5HPY GDP 5.40541
274 3FWY ADP 5.41401
275 2ZPT A3P 5.42373
276 3QVV A3P 5.42373
277 3QVV 3QV 5.42373
278 1KMQ GNP 5.43478
279 1T5C ADP 5.44413
280 2ZFI ADP 5.46448
281 4TL6 ANP 5.5336
282 2WHX ADP 5.56845
283 3TBK ANP 5.56845
284 3RC3 ANP 5.56845
285 1VHT BA3 5.56845
286 2JLR ANP 5.56845
287 2XAU ADP 5.56845
288 5MEX SZZ 5.59006
289 5MEX PAP 5.59006
290 4X8O AP5 5.60748
291 6AIC AMP 5.60748
292 1TX4 ALF GDP 5.64972
293 4KFU ACP 5.66038
294 1P72 ADP 5.68862
295 3DKP ADP 5.71429
296 5HCN GCP 5.74713
297 1CS4 GSP 5.77778
298 3E70 GDP 5.79268
299 1Z0K GTP 5.7971
300 1R6B ADP 5.80046
301 1ZJ6 G3D 5.88235
302 1EK0 GNP 5.88235
303 4V0K GDP 5.91716
304 3H4S ADP 5.92593
305 1HE1 GDP 5.92593
306 2ZE7 DST 5.92885
307 2ZE7 AMP 5.92885
308 2XTZ GSP 5.9322
309 2XTN GTP 5.98291
310 4NU0 AP5 5.99078
311 4ITR GDP 6.01266
312 5NM7 GLY 6.01504
313 3A1S GDP 6.03248
314 2GK6 ADP 6.03248
315 2FSH ANP 6.03248
316 5UPK GNP 6.06936
317 4GOX A3P 6.07029
318 1YRB GDP 6.10687
319 4FCW ADP 6.10932
320 6DEF GCP 6.13811
321 1W4R TTP 6.15385
322 1USF NAP 6.17978
323 1JI0 ATP 6.25
324 5EP2 AZU 6.25
325 4PFO ADP 6.2645
326 2GJ8 ALF GDP 6.39535
327 5GVR LMR 6.41026
328 3FB4 AP5 6.48148
329 3UIE ANP 6.5
330 4GBM A3P 6.50155
331 5Z2M GTP 6.52174
332 1Z2A GDP 6.54762
333 2G77 GDP 6.56566
334 2G77 AF3 6.56566
335 4HDO GNP 6.58683
336 2J0V GDP 6.60377
337 2HF9 GSP 6.63717
338 3WXM GTP 6.64894
339 4P4T GDP 6.66667
340 1DS6 GDP 6.66667
341 4LC1 GDP 6.72854
342 1UJ2 ADP 6.74603
343 1UJ2 C5P 6.74603
344 3GJ4 GDP 6.78733
345 3GJ3 GDP 6.78733
346 3GJ5 GDP 6.78733
347 3GJ0 GDP 6.78733
348 2W58 ADP 6.93069
349 3CH5 GDP 6.94444
350 5BXQ GDP 6.94444
351 1IBR GNP 6.94444
352 3HU3 AGS 6.96056
353 2ZJ5 ADP 6.96056
354 1NRJ GTP 6.96203
355 3B5J 12D 6.99588
356 1Q20 PLO 7.02341
357 1Q20 A3P 7.02341
358 3QXC ATP 7.02479
359 2F9L GDP 7.03518
360 5H4S RAM 7.04225
361 1YZQ GNP 7.05882
362 4JD3 PLM 7.08215
363 4JD3 COA 7.08215
364 3GJ7 GDP 7.14286
365 1ZUI SKM 7.14286
366 1G3Q ADP 7.173
367 3PQC GDP 7.17949
368 1SVI GDP 7.17949
369 4ZG4 VO4 ADP 7.19258
370 3T5G GDP 7.23684
371 2PEZ DAT 7.26257
372 2PEZ GGZ 7.26257
373 4ZNL BEF ADP 7.29927
374 1OIX GDP 7.32984
375 1OIV GDP 7.32984
376 5TB5 GDP 7.33333
377 4LJ9 ACP 7.37463
378 2VB6 ADP BEF 7.38255
379 5XC5 GTP 7.38636
380 1UKZ ADP 7.38916
381 1GUA GNP 7.40741
382 5TAR GDP 7.43243
383 4LPS GDP 7.43802
384 5IRC GDP 7.46269
385 2FH5 GTP 7.47664
386 3RWO GDP 7.56757
387 1TU3 GNP 7.59494
388 1G16 GDP 7.64706
389 1GXU 2HP 7.69231
390 6CIT GNP 7.69231
391 5UWU GNP 7.69231
392 1YVD GNP 7.69231
393 5UWJ GNP 7.69231
394 5UWH GNP 7.69231
395 5UWT GNP 7.69231
396 5DIF GNP 7.69231
397 5DHF GNP 7.69231
398 5UWP GNP 7.69231
399 5UWO GNP 7.69231
400 5UWW GNP 7.69231
401 5UWS GNP 7.69231
402 5UWQ GNP 7.69231
403 5UWI GNP 7.69231
404 5UWR GNP 7.69231
405 1AQU A3P 7.74411
406 2WJH FLC 7.83133
407 2WJH GDP 7.83133
408 5WLB GNP 7.83133
409 2WKQ GTP 7.83133
410 4U5X GNP 7.86517
411 4PX9 ADP 7.87671
412 2BIF SIN 7.88863
413 2BIF ANP 7.88863
414 4WZA ADP 7.88863
415 4WZA ACP 7.88863
416 3IUY AMP 7.89474
417 1NN5 ANP 7.90698
418 1NN5 2DT 7.90698
419 4RD0 GDP 7.95181
420 5L3V GDP 8.12065
421 1DAR GDP 8.12065
422 5L3S GNP 8.12065
423 5L3S G 8.12065
424 1Z83 AP5 8.16327
425 1U0J ADP 8.2397
426 4XTR ATP 8.29493
427 4XVU ATP 8.29493
428 4XTR ADP 8.29493
429 1B7T ADP 8.33333
430 2C78 GNP 8.35267
431 2D7C GTP 8.38323
432 1M2O GNP 8.42105
433 2XT3 ADP 8.43023
434 1GP2 GDP 8.4507
435 6CRK GDP 8.4507
436 3BC1 GNP 8.47458
437 1Z0J GTP 8.47458
438 1WA5 GTP 8.52273
439 2C9O ADP 8.58469
440 1K6M AGS 8.58469
441 1LVK MNT BEF 8.58469
442 1F6B GDP 8.58586
443 2C77 GNP 8.64198
444 3TTM PUT 8.67052
445 1OW3 GDP 8.67769
446 2QZ4 ADP 8.77863
447 5AK0 8V1 8.81671
448 3W5J GDP 8.82353
449 1RYH GNP 8.86699
450 3IIJ ADP 8.88889
451 1H65 GDP 8.88889
452 2A5J GDP 8.90052
453 2NGR GDP 8.97436
454 3Q72 GNP 9.03614
455 1R4A GNP 9.09091
456 1KO8 6PG 9.14286
457 1BG2 ADP 9.23077
458 1D5C GDP 9.25926
459 1FNN ADP 9.28074
460 5L3R GCP 9.30233
461 4KBF AMP 9.31507
462 1KY3 GDP 9.34066
463 4C4P GNP 9.34579
464 1KK8 BEF ADP 9.35252
465 3H86 AP5 9.375
466 1F2U ATP 9.45946
467 1Z0F GDP 9.49721
468 1VG0 GDP 9.51276
469 1VG9 GDP 9.51276
470 1TAD ALF 9.5679
471 1TAD GDP 9.5679
472 1IN4 ADP 9.58084
473 4RW3 SHV 9.60265
474 6C90 ADP 9.61539
475 3MGB PAP 9.71787
476 4WOP CTP 9.77778
477 1CR1 TTP 9.7973
478 4WZ6 ATP 10
479 1NF3 GNP 10.1562
480 1FQJ GDP 10.2041
481 1FQK GDP 10.2041
482 1FQK ALF 10.2041
483 1OYY AGS 10.2088
484 1KSH GDP 10.2151
485 1W0J ADP 10.2941
486 2CK3 ANP 10.2941
487 1W0J ADP BEF 10.2941
488 2CK3 ADP 10.2941
489 1Z0A GDP 10.3448
490 1GRN GDP 10.3448
491 2C5L GTP 10.4046
492 2Y65 ADP 10.411
493 3RLF ANP 10.473
494 4K81 GTP 10.5263
495 5I0H ADP BEF 10.6729
496 6D56 GNP 10.7784
497 6D5H GNP 10.7784
498 6BVJ GNP 10.7784
499 6D5J GNP 10.7784
500 6BVL GNP 10.7784
501 6D59 GNP 10.7784
502 6BVK GNP 10.7784
503 6D5V GNP 10.7784
504 6BVI GNP 10.7784
505 6D5G GNP 10.7784
506 6D5E GNP 10.7784
507 1LFD GNP 10.7784
508 6D5L GNP 10.7784
509 6BVM GNP 10.7784
510 6D5M GNP 10.7784
511 6D55 GNP 10.7784
512 3CX8 GSP 10.8374
513 1CLU DBG 10.8434
514 1WQ1 GDP 10.8434
515 3KUD GDP 10.8434
516 1WQ1 AF3 10.8434
517 3DDC GNP 10.8434
518 1NVV GNP 10.8434
519 4QM7 GTP 11.1111
520 3QBT GNP 11.4943
521 3TMK T5A 11.5741
522 1RE0 GDP 11.7647
523 1AKY AP5 11.8182
524 6G14 G4P 11.9048
525 2ODE ALF GDP 12.0567
526 2CHG ANP 12.065
527 3MD0 GDP 12.1127
528 3T12 GDP ALF 12.1212
529 3T1O GDP 12.1212
530 2IXE ATP 12.1771
531 1G41 ADP 12.529
532 1G7C 5GP 12.766
533 5UIV ADP 13.2159
534 3KTA AP5 13.2948
535 1XEX ATP 13.3721
536 3M1I GTP 13.6126
537 2V7Q ATP 13.6364
538 2V7Q ADP 13.6364
539 1BO4 COA 13.6905
540 1CXZ GSP 13.9535
541 3QF7 ANP 14
542 2HV8 GTP 14.0625
543 5DI9 GNP 14.2857
544 1E96 GTP 14.2857
545 1ION ADP 14.8148
546 5O2T GSP 14.9733
547 6FA4 GNP 15.0289
548 2FFQ GSP 15.2047
549 3GJ8 GDP 15.2174
550 1J2J GTP 15.5556
551 1I4D GDP 15.625
552 1ZD9 GDP 15.9574
553 1XX6 ADP 16.7539
554 1OFH ADP 17.4194
555 4HAT GNP 18.5714
556 3ZIA ADP 19.0476
557 3ZIA ATP 19.0476
558 2UZI GTP 19.2308
559 2KIN ADP 20
560 1Z06 GNP 21.164
561 5KDO GDP 21.6216
562 1GOT GDP 21.9178
563 5LS7 ACO 31.7073
564 2QN6 GDP 33.3333
565 2D7D ADP 35
566 2B8W ALF 5GP 37.8049
567 1F5N GNP 39.6752
Pocket No.: 2; Query (leader) PDB : 5VGR; Ligand: GDP; Similar sites found with APoc: 2
This union binding pocket(no: 2) in the query (biounit: 5vgr.bio2) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 3TTN SPD 2.64706
2 1FQJ ALF 10.2041
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