Receptor
PDB id Resolution Class Description Source Keywords
5QY7 1.67 Å NON-ENZYME: OTHER PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX W FRAGMENT F2X-ENTRY C08A SACCHAROMYCES CEREVISIAE (STRAIN ATCC S288C) FRAGMAX FRAGMAXAPP FRAGMENT SCREENING RNASEH LIKE DOMAINDOMAIN U5 SNRNP ASSEMBLY SPLICING F2X-ENTRY
Ref.: F2X-UNIVERSAL AND F2X-ENTRY: STRUCTURALLY DIVERSE C LIBRARIES FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING. STRUCTURE V. 28 694 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 A:2101;
A:2102;
 Invalid;
Invalid;
 none;
none;
 submit data
96.063 O4 S [O-]S...
USJ B:401;
 Valid;
 Atoms found MORE than expected: % Diff = 3;
 submit data
165.189 C9 H11 N O2 CN1[C...
PGR A:2103;
 Invalid;
 none;
 submit data
76.094 C3 H8 O2 C[C@H...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5R0D 1.27 Å NON-ENZYME: OTHER PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX W FRAGMENT F2X-ENTRY C11, DMSO-FREE SACCHAROMYCES CEREVISIAE (STRAIN ATCC S288C) FRAGMAX FRAGMAXAPP FRAGMENT SCREENING RNASEH LIKE DOMAINDOMAIN U5 SNRNP ASSEMBLY SPLICING
Ref.: F2X-UNIVERSAL AND F2X-ENTRY: STRUCTURALLY DIVERSE C LIBRARIES FOR CRYSTALLOGRAPHIC FRAGMENT SCREENING. STRUCTURE V. 28 694 2020
Members (35)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 5R09 - SYG C9 H13 N O CC[C@@H](c....
2 5R0G - SYJ C11 H10 F N O3 S c1ccc(c(c1....
3 5QY1 - R8A C6 H8 N2 O c1cc(c(nc1....
4 5QYB - R9G C12 H15 N O2 COc1cccc(c....
5 5R0B - SY7 C28 H30 N6 O4 COc1cc(ccn....
6 5QYK - SZA C12 H12 N2 O S c1cc(sc1)C....
7 5R0C - R8V C9 H9 N O2 CN1[C@H](c....
8 5QY7 - USJ C9 H11 N O2 CN1[C@H](c....
9 5QYD - R9S C9 H11 N O Cc1ccccc1C....
10 5R0M - SZA C12 H12 N2 O S c1cc(sc1)C....
11 5R0E - SY4 C9 H12 F2 N2 O2 S CCCS(=O)(=....
12 5QYC - SYJ C11 H10 F N O3 S c1ccc(c(c1....
13 5QYJ - TBJ C11 H20 N2 O2 C1CCC(C1)N....
14 5R0J - RBJ C8 H11 N O CNCc1ccc(c....
15 5QY4 - T9S C10 H12 N2 O2 CCOC(=O)N1....
16 5QYI - SZ7 C9 H10 N2 O S c1cc(sc1)/....
17 5R08 - R8A C6 H8 N2 O c1cc(c(nc1....
18 5QYE - USP C8 H10 N2 O2 CN1c2ccc(c....
19 5QY5 - SYA C8 H5 F3 O3 COc1c(c(cc....
20 5R0K - SZ7 C9 H10 N2 O S c1cc(sc1)/....
21 5R0L - TBJ C11 H20 N2 O2 C1CCC(C1)N....
22 5QY3 - SYG C9 H13 N O CC[C@@H](c....
23 5R0H - R9S C9 H11 N O Cc1ccccc1C....
24 5QYH - T9V C9 H11 N O2 CC(=O)Nc1c....
25 5QY6 - SY7 C28 H30 N6 O4 COc1cc(ccn....
26 5QY2 - TJ1 C5 H8 N2 O2 CC(C)C1=NO....
27 5R0D - R8Y C10 H13 N O3 S CCN(CCC(=O....
28 5QYG - RBJ C8 H11 N O CNCc1ccc(c....
29 5QY8 - TJV C8 H7 N O2 S c1cc2c(cc1....
30 5R0I - SYV C8 H8 N2 O2 CN1c2ccc(c....
31 5R0F - R9G C12 H15 N O2 COc1cccc(c....
32 5QY9 - R8Y C10 H13 N O3 S CCN(CCC(=O....
33 5QYF - T9Y C7 H7 F3 N2 O2 CCOC(=O)c1....
34 5QYA - SY4 C9 H12 F2 N2 O2 S CCCS(=O)(=....
35 5R0A - SYA C8 H5 F3 O3 COc1c(c(cc....
70% Homology Family (35)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 5R09 - SYG C9 H13 N O CC[C@@H](c....
2 5R0G - SYJ C11 H10 F N O3 S c1ccc(c(c1....
3 5QY1 - R8A C6 H8 N2 O c1cc(c(nc1....
4 5QYB - R9G C12 H15 N O2 COc1cccc(c....
5 5R0B - SY7 C28 H30 N6 O4 COc1cc(ccn....
6 5QYK - SZA C12 H12 N2 O S c1cc(sc1)C....
7 5R0C - R8V C9 H9 N O2 CN1[C@H](c....
8 5QY7 - USJ C9 H11 N O2 CN1[C@H](c....
9 5QYD - R9S C9 H11 N O Cc1ccccc1C....
10 5R0M - SZA C12 H12 N2 O S c1cc(sc1)C....
11 5R0E - SY4 C9 H12 F2 N2 O2 S CCCS(=O)(=....
12 5QYC - SYJ C11 H10 F N O3 S c1ccc(c(c1....
13 5QYJ - TBJ C11 H20 N2 O2 C1CCC(C1)N....
14 5R0J - RBJ C8 H11 N O CNCc1ccc(c....
15 5QY4 - T9S C10 H12 N2 O2 CCOC(=O)N1....
16 5QYI - SZ7 C9 H10 N2 O S c1cc(sc1)/....
17 5R08 - R8A C6 H8 N2 O c1cc(c(nc1....
18 5QYE - USP C8 H10 N2 O2 CN1c2ccc(c....
19 5QY5 - SYA C8 H5 F3 O3 COc1c(c(cc....
20 5R0K - SZ7 C9 H10 N2 O S c1cc(sc1)/....
21 5R0L - TBJ C11 H20 N2 O2 C1CCC(C1)N....
22 5QY3 - SYG C9 H13 N O CC[C@@H](c....
23 5R0H - R9S C9 H11 N O Cc1ccccc1C....
24 5QYH - T9V C9 H11 N O2 CC(=O)Nc1c....
25 5QY6 - SY7 C28 H30 N6 O4 COc1cc(ccn....
26 5QY2 - TJ1 C5 H8 N2 O2 CC(C)C1=NO....
27 5R0D - R8Y C10 H13 N O3 S CCN(CCC(=O....
28 5QYG - RBJ C8 H11 N O CNCc1ccc(c....
29 5QY8 - TJV C8 H7 N O2 S c1cc2c(cc1....
30 5R0I - SYV C8 H8 N2 O2 CN1c2ccc(c....
31 5R0F - R9G C12 H15 N O2 COc1cccc(c....
32 5QY9 - R8Y C10 H13 N O3 S CCN(CCC(=O....
33 5QYF - T9Y C7 H7 F3 N2 O2 CCOC(=O)c1....
34 5QYA - SY4 C9 H12 F2 N2 O2 S CCCS(=O)(=....
35 5R0A - SYA C8 H5 F3 O3 COc1c(c(cc....
50% Homology Family (35)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 5R09 - SYG C9 H13 N O CC[C@@H](c....
2 5R0G - SYJ C11 H10 F N O3 S c1ccc(c(c1....
3 5QY1 - R8A C6 H8 N2 O c1cc(c(nc1....
4 5QYB - R9G C12 H15 N O2 COc1cccc(c....
5 5R0B - SY7 C28 H30 N6 O4 COc1cc(ccn....
6 5QYK - SZA C12 H12 N2 O S c1cc(sc1)C....
7 5R0C - R8V C9 H9 N O2 CN1[C@H](c....
8 5QY7 - USJ C9 H11 N O2 CN1[C@H](c....
9 5QYD - R9S C9 H11 N O Cc1ccccc1C....
10 5R0M - SZA C12 H12 N2 O S c1cc(sc1)C....
11 5R0E - SY4 C9 H12 F2 N2 O2 S CCCS(=O)(=....
12 5QYC - SYJ C11 H10 F N O3 S c1ccc(c(c1....
13 5QYJ - TBJ C11 H20 N2 O2 C1CCC(C1)N....
14 5R0J - RBJ C8 H11 N O CNCc1ccc(c....
15 5QY4 - T9S C10 H12 N2 O2 CCOC(=O)N1....
16 5QYI - SZ7 C9 H10 N2 O S c1cc(sc1)/....
17 5R08 - R8A C6 H8 N2 O c1cc(c(nc1....
18 5QYE - USP C8 H10 N2 O2 CN1c2ccc(c....
19 5QY5 - SYA C8 H5 F3 O3 COc1c(c(cc....
20 5R0K - SZ7 C9 H10 N2 O S c1cc(sc1)/....
21 5R0L - TBJ C11 H20 N2 O2 C1CCC(C1)N....
22 5QY3 - SYG C9 H13 N O CC[C@@H](c....
23 5R0H - R9S C9 H11 N O Cc1ccccc1C....
24 5QYH - T9V C9 H11 N O2 CC(=O)Nc1c....
25 5QY6 - SY7 C28 H30 N6 O4 COc1cc(ccn....
26 5QY2 - TJ1 C5 H8 N2 O2 CC(C)C1=NO....
27 5R0D - R8Y C10 H13 N O3 S CCN(CCC(=O....
28 5QYG - RBJ C8 H11 N O CNCc1ccc(c....
29 5QY8 - TJV C8 H7 N O2 S c1cc2c(cc1....
30 5R0I - SYV C8 H8 N2 O2 CN1c2ccc(c....
31 5R0F - R9G C12 H15 N O2 COc1cccc(c....
32 5QY9 - R8Y C10 H13 N O3 S CCN(CCC(=O....
33 5QYF - T9Y C7 H7 F3 N2 O2 CCOC(=O)c1....
34 5QYA - SY4 C9 H12 F2 N2 O2 S CCCS(=O)(=....
35 5R0A - SYA C8 H5 F3 O3 COc1c(c(cc....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: USJ; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 USJ 1 1
Similar Ligands (3D)
Ligand no: 1; Ligand: USJ; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5R0D; Ligand: R8Y; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5r0d.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
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