Receptor
PDB id Resolution Class Description Source Keywords
5OLR 1.07 Å EC: 4.-.-.- RHAMNOGALACTURONAN LYASE BACTEROIDES THETAIOTAOMICRON PECTIN PL9 POLYSACCHARIDE LYASE FAMILY 9 RHAMNOGALACTURONENDO-ACTING ENZYME LYASE
Ref.: DIETARY PECTIC GLYCANS ARE DEGRADED BY COORDINATED PATHWAYS IN HUMAN COLONIC BACTEROIDES. NAT MICROBIOL V. 3 210 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA B:602;
A:602;
C:603;
A:603;
B:603;
C:602;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
submit data
40.078 Ca [Ca+2...
PO4 B:601;
A:601;
C:601;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
94.971 O4 P [O-]P...
RAM ADA RAM D:1;
E:1;
F:1;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
485.415 n/a O=C([...
PGE A:607;
Invalid;
none;
submit data
150.173 C6 H14 O4 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5OLR 1.07 Å EC: 4.-.-.- RHAMNOGALACTURONAN LYASE BACTEROIDES THETAIOTAOMICRON PECTIN PL9 POLYSACCHARIDE LYASE FAMILY 9 RHAMNOGALACTURONENDO-ACTING ENZYME LYASE
Ref.: DIETARY PECTIC GLYCANS ARE DEGRADED BY COORDINATED PATHWAYS IN HUMAN COLONIC BACTEROIDES. NAT MICROBIOL V. 3 210 2018
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 5OLR - RAM ADA RAM n/a n/a
2 5OLS - RAM ADA RAM n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 59 families.
1 5OLR - RAM ADA RAM n/a n/a
2 5OLS - RAM ADA RAM n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 47 families.
1 5OLR - RAM ADA RAM n/a n/a
2 5OLS - RAM ADA RAM n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: RAM ADA RAM; Similar ligands found: 17
No: Ligand ECFP6 Tc MDL keys Tc
1 RAM ADA RAM 1 1
2 GTR RAM GTR RAM GTR RAM 0.676471 0.90625
3 ADA ADA ADA ADA 0.514706 0.84375
4 ADA ADA ADA ADA ADA ADA 0.514706 0.84375
5 ADA ADA ADA ADA ADA 0.514706 0.84375
6 ADA ADA ADA ADA ADA M8C 0.486486 0.848485
7 ADA ADA ADA 0.472973 0.72973
8 M8C ADA ADA ADA ADA M8C 0.467532 0.878788
9 ADA M8C M8C M8C ADA ADA 0.461538 0.878788
10 ADA ADA 0.455882 0.870968
11 M8C ADA ADA ADA M8C M8C 0.455696 0.878788
12 ADA ADA ADA ADA M8C M8C 0.455696 0.878788
13 LGU MAV BEM 0.453333 0.771429
14 RAM GAD 0.438356 0.875
15 ADA M8C M8C M8C M8C ADA 0.435897 0.878788
16 GCU MAV MAW 0.402439 0.794118
17 MAV LGU MAV BEM 0.402439 0.794118
Similar Ligands (3D)
Ligand no: 1; Ligand: RAM ADA RAM; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5OLR; Ligand: RAM ADA RAM; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5olr.bio3) has 11 residues
No: Leader PDB Ligand Sequence Similarity
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