Receptor
PDB id Resolution Class Description Source Keywords
5OEC 2.3 Å NON-ENZYME: OTHER HUMAN RAB32 (18-201):GDP IN COMPLEX WITH SALMONELLA GTGE (21 MUTANT SALMONELLA CHOLERAESUIS RAB GTPASE POSTTRANSLATIONAL MODIFICATION PROTEOLYSIS SALINFECTION HYDROLASE
Ref.: THE PROTEASE GTGE FROM SALMONELLA EXCLUSIVELY TARGE INACTIVE RAB GTPASES. NAT COMMUN V. 9 44 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG B:901;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
GDP B:900;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5OEC 2.3 Å NON-ENZYME: OTHER HUMAN RAB32 (18-201):GDP IN COMPLEX WITH SALMONELLA GTGE (21 MUTANT SALMONELLA CHOLERAESUIS RAB GTPASE POSTTRANSLATIONAL MODIFICATION PROTEOLYSIS SALINFECTION HYDROLASE
Ref.: THE PROTEASE GTGE FROM SALMONELLA EXCLUSIVELY TARGE INACTIVE RAB GTPASES. NAT COMMUN V. 9 44 2018
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5OEC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5OEC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5OEC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5OEC; Ligand: GDP; Similar sites found with APoc: 71
This union binding pocket(no: 1) in the query (biounit: 5oec.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 3MD0 GDP 3.27869
2 1D8T GDP 5.07614
3 1KK1 GNP 6.01093
4 1YRB GDP 6.87023
5 5CK5 GDP 7.10383
6 4DCT GDP 7.10383
7 2AWN ADP 7.61421
8 1SKQ GDP 9.28962
9 6G14 G4P 9.28962
10 5KUT GDP 9.28962
11 2QN6 GDP 11.828
12 2WJG GDP 12.234
13 2RCN GDP 14.2132
14 4LC1 GDP 23.4973
15 1RE0 GDP 24.3902
16 5YT0 GDP 30.6011
17 5FG3 GDP 30.6011
18 1FZQ GDP 31.4917
19 1DS6 GDP 33.8798
20 1MH1 GNP 33.8798
21 1ZJ6 G3D 34.9727
22 3Q85 GNP 36.0947
23 3T5G GDP 38.1215
24 4D0N GDP 38.7978
25 1E96 GTP 38.7978
26 1I4D GDP 39.3443
27 2A9K GDP 41.5301
28 2J0V GDP 42.623
29 5TB5 GDP 43.2432
30 5TAR GDP 43.2432
31 3Q72 GNP 43.3735
32 2CJW GDP 45.9016
33 2HT6 GDP 46.5517
34 1R4A GNP 46.6667
35 1KAO GDP 46.7066
36 3M1I GTP 47.541
37 1U8Z GDP 47.619
38 2C5L GTP 47.9769
39 1GUA GNP 48.503
40 3GJ4 GDP 48.6339
41 3GJ7 GDP 48.6339
42 3GJ5 GDP 48.6339
43 3GJ8 GDP 48.6339
44 5WLB GNP 48.7952
45 6D5E GNP 49.1018
46 6BVJ GNP 49.1018
47 6BVL GNP 49.1018
48 6D5J GNP 49.1018
49 6BVK GNP 49.1018
50 6D5H GNP 49.1018
51 6D5G GNP 49.1018
52 3GJ3 GDP 49.1803
53 5BXQ GDP 49.1803
54 3GJ0 GDP 49.1803
55 3CH5 GDP 49.1803
56 5UWQ GNP 49.1803
57 5UWO GNP 49.1803
58 5UWS GNP 49.1803
59 5UWW GNP 49.1803
60 6CIT GNP 49.1803
61 5UWU GNP 49.1803
62 5UWP GNP 49.1803
63 5UWH GNP 49.1803
64 5UWT GNP 49.1803
65 4HAT GNP 49.1803
66 5DHF GNP 49.1803
67 1WQ1 GDP 49.3976
68 1CLU DBG 49.3976
69 3KUD GDP 49.3976
70 1Z0J GTP 49.4118
71 4HDO GNP 49.7006
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