Receptor
PDB id Resolution Class Description Source Keywords
5NO9 1.75 Å NON-ENZYME: OTHER NLPPYA IN COMPLEX WITH MANNOSAMINE PYTHIUM APHANIDERMATUM ACTINOPORIN-LIKE PROTEINS NEP1-LIKE PROTEINS COMPLEX WITH TOXIN
Ref.: EUDICOT PLANT-SPECIFIC SPHINGOLIPIDS DETERMINE HOST SELECTIVITY OF MICROBIAL NLP CYTOLYSINS. SCIENCE V. 358 1431 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG C:301;
B:301;
A:301;
D:301;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
95Z D:302;
Valid;
none;
submit data
179.171 C6 H13 N O5 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5NNW 1.54 Å NON-ENZYME: OTHER NLPPYA IN COMPLEX WITH GLUCOSAMINE PYTHIUM APHANIDERMATUM ACTINOPORIN-LIKE PROTEINS NEP1-LIKE PROTEINS COMPLEX TOXI
Ref.: EUDICOT PLANT-SPECIFIC SPHINGOLIPIDS DETERMINE HOST SELECTIVITY OF MICROBIAL NLP CYTOLYSINS. SCIENCE V. 358 1431 2017
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5NO9 - 95Z C6 H13 N O5 C([C@@H]1[....
2 5NNW - GCS C6 H13 N O5 C([C@@H]1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5NO9 - 95Z C6 H13 N O5 C([C@@H]1[....
2 5NNW - GCS C6 H13 N O5 C([C@@H]1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5NO9 - 95Z C6 H13 N O5 C([C@@H]1[....
2 5NNW - GCS C6 H13 N O5 C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 95Z; Similar ligands found: 29
No: Ligand ECFP6 Tc MDL keys Tc
1 PA1 1 1
2 95Z 1 1
3 GCS 1 1
4 X6X 1 1
5 1GN 1 1
6 4R1 0.488372 0.729167
7 GLP 0.488372 0.729167
8 FUB 0.483871 0.684211
9 Z6J 0.483871 0.684211
10 AHR 0.483871 0.684211
11 32O 0.483871 0.684211
12 RIB 0.483871 0.684211
13 BMA 0.457143 0.777778
14 MAN 0.457143 0.777778
15 BGC 0.457143 0.777778
16 GIV 0.457143 0.777778
17 GLC 0.457143 0.777778
18 WOO 0.457143 0.777778
19 GAL 0.457143 0.777778
20 ALL 0.457143 0.777778
21 GLA 0.457143 0.777778
22 GXL 0.457143 0.777778
23 3LJ 0.454545 0.636364
24 2FG 0.421053 0.7
25 GAF 0.421053 0.7
26 G2F 0.421053 0.7
27 SHG 0.421053 0.7
28 2GS 0.4 0.7
29 GP1 0.4 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5NNW; Ligand: GCS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5nnw.bio4) has 8 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback