Receptor
PDB id Resolution Class Description Source Keywords
5NM7 1.72 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF BURKHOLDERIA AP3 PHAGE ENDOLYSIN BURKHOLDERIA PEPTIDOGLYCAN BINDING DOMAIN LYSOZYME FAMILY HYDROLASE
Ref.: MODULAR ENDOLYSIN OF BURKHOLDERIA AP3 PHAGE HAS THE LYSOZYME-LIKE CATALYTIC SUBUNIT DISCOVERED TO DATE CATALYTIC ASPARTATE RESIDUE. SCI REP V. 7 14501 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GLY A:302;
G:302;
A:301;
G:301;
G:303;
Invalid;
Invalid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
submit data
75.067 C2 H5 N O2 C(C(=...
PGE G:304;
Invalid;
none;
submit data
150.173 C6 H14 O4 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5NM7 1.72 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF BURKHOLDERIA AP3 PHAGE ENDOLYSIN BURKHOLDERIA PEPTIDOGLYCAN BINDING DOMAIN LYSOZYME FAMILY HYDROLASE
Ref.: MODULAR ENDOLYSIN OF BURKHOLDERIA AP3 PHAGE HAS THE LYSOZYME-LIKE CATALYTIC SUBUNIT DISCOVERED TO DATE CATALYTIC ASPARTATE RESIDUE. SCI REP V. 7 14501 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 5NM7 - GLY C2 H5 N O2 C(C(=O)O)N
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 5NM7 - GLY C2 H5 N O2 C(C(=O)O)N
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 5NM7 - GLY C2 H5 N O2 C(C(=O)O)N
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLY; Similar ligands found: 5
No: Ligand ECFP6 Tc MDL keys Tc
1 GLY 1 1
2 BAL 0.5625 0.708333
3 ABU 0.473684 0.708333
4 MCR 0.466667 0.65
5 2RA 0.421053 0.692308
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5NM7; Ligand: GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5nm7.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5NM7; Ligand: GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5nm7.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5NM7; Ligand: GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 5nm7.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 5NM7; Ligand: GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5nm7.bio2) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 5NM7; Ligand: GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 5nm7.bio2) has 8 residues
No: Leader PDB Ligand Sequence Similarity
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