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Receptor
PDB id Resolution Class Description Source Keywords
5LEF 2.09 Å NON-ENZYME: OTHER RAB6A:KIF20A COMPLEX HOMO SAPIENS RAB GTPASE KINESIN MOTOR PROTEIN COMPLEX PROTEIN TRANSPO
Ref.: COUPLING FISSION AND EXIT OF RAB6 VESICLES AT GOLGI THROUGH KINESIN-MYOSIN INTERACTIONS. NAT COMMUN V. 8 1254 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:204;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
IPA B:205;
Invalid;
none;
submit data
60.095 C3 H8 O CC(C)...
MG B:202;
A:202;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
SO4 B:204;
A:203;
B:203;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
GTP A:201;
B:201;
Valid;
Valid;
none;
none;
submit data
523.18 C10 H16 N5 O14 P3 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5LEF 2.09 Å NON-ENZYME: OTHER RAB6A:KIF20A COMPLEX HOMO SAPIENS RAB GTPASE KINESIN MOTOR PROTEIN COMPLEX PROTEIN TRANSPO
Ref.: COUPLING FISSION AND EXIT OF RAB6 VESICLES AT GOLGI THROUGH KINESIN-MYOSIN INTERACTIONS. NAT COMMUN V. 8 1254 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5LEF - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5LEF - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5LEF - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GTP; Similar ligands found: 156
No: Ligand ECFP6 Tc MDL keys Tc
1 GTP 1 1
2 GP3 0.921053 0.973684
3 GDP 0.909091 1
4 GSP 0.853659 0.948718
5 GNH 0.82716 0.986667
6 G1R 0.819277 0.986667
7 GAV 0.811765 0.961039
8 9GM 0.809524 0.973684
9 GNP 0.809524 0.973684
10 GCP 0.797619 0.973684
11 5GP 0.797468 0.986486
12 G 0.797468 0.986486
13 GMV 0.764706 0.973684
14 G2R 0.764045 0.961039
15 G5P 0.755319 0.973684
16 GTG 0.752688 0.936709
17 G2P 0.747126 0.961039
18 G3A 0.744681 0.973684
19 GDD 0.741935 0.961039
20 GDC 0.741935 0.961039
21 GKE 0.741935 0.961039
22 0O2 0.736264 0.986486
23 GP2 0.729412 0.961039
24 6CK 0.726316 0.936709
25 Y9Z 0.723404 0.902439
26 GPG 0.717391 0.961039
27 GFB 0.715789 0.961039
28 GDR 0.715789 0.961039
29 GPD 0.704082 0.925
30 GKD 0.693878 0.961039
31 JB2 0.693878 0.961039
32 GDX 0.686869 0.973684
33 ALF 5GP 0.685393 0.888889
34 GH3 0.681319 0.973333
35 YGP 0.677083 0.901235
36 G3D 0.67033 0.986486
37 GDP AF3 0.659574 0.888889
38 ALF GDP 0.659574 0.888889
39 GDP ALF 0.659574 0.888889
40 DGT 0.659341 0.923077
41 GMP 0.658228 0.88
42 G4P 0.655914 0.986486
43 JB3 0.653846 0.948718
44 NGD 0.647619 0.961039
45 CAG 0.642202 0.880952
46 2MD 0.62963 0.891566
47 MGP 0.619565 0.961039
48 U2G 0.616822 0.936709
49 6G0 0.612903 0.961039
50 MGD 0.612613 0.891566
51 TPG 0.608696 0.840909
52 CG2 0.605505 0.936709
53 GDP 7MG 0.601942 0.911392
54 FEG 0.601852 0.879518
55 G G 0.598039 0.948052
56 ZGP 0.59633 0.869048
57 PGD 0.591304 0.925
58 MD1 0.591304 0.891566
59 3GP 0.590909 0.946667
60 GPX 0.581633 0.946667
61 DGI 0.580645 0.923077
62 IDP 0.576087 0.972973
63 DBG 0.567797 0.948718
64 2GP 0.555556 0.96
65 FE9 0.555556 0.776596
66 G4M 0.547619 0.880952
67 BGO 0.544643 0.924051
68 GCP G 0.543689 0.921053
69 ATP 0.537634 0.92
70 HEJ 0.537634 0.92
71 G1G 0.533898 0.925
72 AQP 0.531915 0.92
73 5FA 0.531915 0.92
74 A G 0.525862 0.935065
75 G A A A 0.525862 0.923077
76 U A G G 0.521368 0.935065
77 HFD 0.520833 0.873418
78 R5I 0.520408 0.946667
79 R7I 0.520408 0.946667
80 01G 0.518868 0.902439
81 P2G 0.510638 0.883117
82 ITT 0.510638 0.868421
83 AKW 0.504348 0.890244
84 GGM 0.504274 0.901235
85 G1R G1R 0.504065 0.924051
86 DGP 0.5 0.910256
87 PGD O 0.5 0.850575
88 MGO 0.5 0.864198
89 DG 0.5 0.910256
90 P1G 0.5 0.871795
91 GTA 0.495495 0.936709
92 PRT 0.490741 0.959459
93 B4P 0.489362 0.894737
94 AP5 0.489362 0.894737
95 IMP 0.489362 0.959459
96 G U 0.487179 0.9
97 7DT 0.484536 0.906667
98 GPC 0.479339 0.879518
99 G C 0.478992 0.9
100 BA3 0.478723 0.894737
101 ADP 0.473684 0.92
102 G2Q 0.471698 0.961039
103 6YZ 0.470588 0.896104
104 G7M 0.46875 0.948052
105 C1Z 0.462963 0.986486
106 25L 0.458716 0.907895
107 A2D 0.457447 0.894737
108 RGT 0.45045 0.909091
109 AGS 0.45 0.873418
110 SAP 0.45 0.873418
111 SGP 0.44898 0.82716
112 A4P 0.445378 0.869048
113 G G G RPC 0.442623 0.875
114 ANP 0.441176 0.896104
115 ACQ 0.441176 0.896104
116 8GT 0.441176 0.875
117 APC G U 0.44 0.886076
118 AT4 0.438776 0.884615
119 G U34 0.438017 0.888889
120 6AD 0.436893 0.841463
121 G G G C 0.433071 0.9125
122 UP5 0.432203 0.873418
123 PCG 0.431373 0.933333
124 C2E 0.431373 0.921053
125 35G 0.431373 0.933333
126 A G C C 0.429688 0.911392
127 T99 0.427184 0.884615
128 5GP 5GP 0.427184 0.883117
129 TAT 0.427184 0.884615
130 AR6 0.425743 0.894737
131 APR 0.425743 0.894737
132 7DD 0.424242 0.906667
133 AN2 0.424242 0.907895
134 DG DG 0.423423 0.865854
135 AD9 0.421569 0.896104
136 M33 0.42 0.883117
137 7D4 0.42 0.835443
138 UCG 0.419847 0.911392
139 HDV 0.419048 0.825
140 H6Y 0.419048 0.946667
141 G C C C 0.416667 0.924051
142 ACP 0.415842 0.896104
143 T5A 0.414634 0.802326
144 A1R 0.412844 0.839506
145 ADQ 0.412844 0.871795
146 MGQ 0.412844 0.935897
147 A3R 0.412844 0.839506
148 MGT 0.411215 0.823529
149 A G U 0.410072 0.888889
150 93A 0.41 0.833333
151 A22 0.407407 0.907895
152 CA0 0.405941 0.896104
153 ATF 0.40566 0.884615
154 AGO 0.404762 0.888889
155 MGV 0.401786 0.890244
156 CGP 0.4 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5LEF; Ligand: GTP; Similar sites found with APoc: 498
This union binding pocket(no: 1) in the query (biounit: 5lef.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 5KUT GDP None
2 3W5J GDP None
3 5FUI APY None
4 1VHT BA3 None
5 1GXU 2HP None
6 1PTR PRB None
7 1ION ADP None
8 1AKY AP5 None
9 2GNK ATP None
10 2YIP YIO None
11 1S3G AP5 1.04712
12 1JI0 ATP 1.57068
13 1XX6 ADP 1.57068
14 1DAK DPU 1.57068
15 1DAK ADP 1.57068
16 1E2K TMC 1.57068
17 2Z5F A3P 1.57068
18 1WY7 SAH 1.57068
19 3BER AMP 1.57068
20 1BO4 COA 1.78571
21 1JJ7 ADP 2.09424
22 4H1V GNP 2.6178
23 4D81 ADP 2.6178
24 4IEE AGS 2.6178
25 5GVR LMR 2.6178
26 1IN4 ADP 2.6178
27 2WW4 ADP 2.6178
28 1KO8 6PG 2.85714
29 3B9Q MLI 3.14136
30 1B0U ATP 3.14136
31 3FWY ADP 3.14136
32 4IHQ ADP 3.14136
33 4WOP CTP 3.14136
34 3QXC ATP 3.14136
35 6AR9 3L4 3.14136
36 2Q37 3AL 3.31492
37 6B8B ADP 3.61446
38 4LC1 GDP 3.66492
39 2W58 ADP 3.66492
40 2HCJ GDP 3.66492
41 3A4M ADP 3.66492
42 1D2E GDP 3.66492
43 2PL3 ADP 3.66492
44 1P72 ADP 3.66492
45 5H4S RAM 3.66492
46 2BVN GNP 4.18848
47 1D8T GDP 4.18848
48 2D2F ADP 4.18848
49 1H65 GDP 4.18848
50 1C3X 8IG 4.18848
51 4MKG AP5 4.18848
52 3FB4 AP5 4.18848
53 3VM7 GLC 4.18848
54 1YZG GDP 4.54545
55 1YQT ADP 4.54545
56 2XTN GTP 4.54545
57 5L3R GCP 4.54545
58 4X8O AP5 4.54545
59 5I34 GDP 4.54545
60 1QF9 ALF 4.54545
61 1QF9 ADP 4.54545
62 1QF9 C5P 4.54545
63 4R98 GNH 4.71204
64 4ZG4 VO4 ADP 4.71204
65 1LVK MNT BEF 4.71204
66 1FNN ADP 4.71204
67 1AQU A3P 4.71204
68 2QZ4 ADP 4.71204
69 1ZIN AP5 4.71204
70 1CR1 TTP 4.71204
71 3KIH GDL 5.15464
72 3T12 GDP ALF 5.2356
73 3T1O GDP 5.2356
74 1U0J ADP 5.2356
75 1OYY AGS 5.2356
76 4MKF AP5 5.2356
77 1O8B ABF 5.2356
78 5EXT ADP 5.2356
79 2QQ0 ANP 5.43478
80 2QQ0 TMP 5.43478
81 2QQ0 ADP 5.43478
82 2A5F GTP 5.71429
83 1XP8 AGS 5.7377
84 4UCI ADN 5.75916
85 4QM7 GTP 5.84795
86 2WIC GNP 5.99251
87 5YT0 GDP 6.06061
88 2AWN ADP 6.06061
89 4YMU ATP 6.06061
90 3DZD ADP 6.06061
91 2ZPA ADP 6.06061
92 5NM7 GLY 6.06061
93 3BFV ADP 6.06061
94 2VVG ADP 6.28272
95 2RCN GDP 6.28272
96 3NHB ADP 6.28272
97 1QF5 GDP 6.28272
98 1QF5 RPL 6.28272
99 3DC4 ADP 6.28272
100 4NU0 AP5 6.28272
101 5BQ5 ADP BEF 6.34921
102 3MD0 GDP 6.80628
103 3TK1 GDP 6.80628
104 3DEF GDP 6.80628
105 4O48 ASP 6.80628
106 4U60 SIA GAL BGC NGA GAL 6.80628
107 1TL2 NDG 6.80628
108 3BOS CDP 6.80628
109 1JAY F42 7.07547
110 3KTA AP5 7.14286
111 1RRC ADP 7.32984
112 1SQ5 ADP 7.32984
113 4NE2 SH2 7.32984
114 4NE2 ADP 7.32984
115 3A1S GDP 7.57576
116 2OG2 MLI 7.57576
117 4AG5 ADP 7.57576
118 2B8W ALF 5GP 7.57576
119 4R43 GDP 7.57576
120 5SXS NIZ 7.57576
121 3H86 AP5 7.57576
122 1SQL GUN 7.57576
123 1I0B PEL 7.57576
124 1TAD ALF 7.8534
125 1TAD GDP 7.8534
126 5I0H ADP BEF 7.8534
127 2ZFI ADP 7.8534
128 1G3Q ADP 7.8534
129 5CK5 GDP 8.37696
130 4KBF AMP 8.37696
131 4IOK ADP 8.37696
132 4IOK XPO 8.37696
133 1R4A GNP 8.48485
134 3KIF GDL 8.49057
135 2XT3 ADP 8.90052
136 4M9Q GNP 9.09091
137 3EC1 GDP 9.09091
138 2GJ8 ALF GDP 9.09091
139 5XKT GNP 9.09091
140 1IWE IMP 9.09091
141 2GDJ ANP 9.09091
142 4IDN GNP 9.09091
143 1ZUI SKM 9.09091
144 6CS8 F9Y 9.09091
145 1YTM ATP 9.09091
146 1SVM ATP 9.09091
147 3ITJ CIT 9.09091
148 4GBM A3P 9.09091
149 1D2N ANP 9.09091
150 5ZB0 TYD 9.09091
151 5ZB0 ADP 9.09091
152 4TTQ ATP 9.09091
153 3FYH ADP 9.09091
154 1NHX FTB 9.09091
155 1NHX PEP 9.09091
156 1LVG ADP 9.42408
157 2Q2Y ADP 9.42408
158 2Q2Y MKR 9.42408
159 4RHS SIA SIA GAL 9.83607
160 1GOJ ADP 9.94764
161 2IXE ATP 9.94764
162 3P13 RIP 10.4167
163 1SKQ GDP 10.6061
164 4KFU ACP 10.6061
165 5M04 GDP 10.6061
166 3KJI ADP 10.6061
167 3ZS9 ADP ALF 10.6061
168 6C90 ADP 10.6061
169 2WOJ ADP ALF 10.6061
170 4XTR ATP 10.6061
171 4XVU ATP 10.6061
172 5MZN ADP 10.6061
173 1L2T ATP 10.6061
174 4XTR ADP 10.6061
175 2BEK ATP 10.6061
176 3BFX A3P 10.6061
177 1R6B ADP 10.6061
178 3QVV A3P 10.6061
179 2WJH FLC 10.8434
180 2WJH GDP 10.8434
181 5UIV ADP 10.9948
182 4FCW ADP 10.9948
183 2IYL GDP 10.9948
184 4ZDJ UTP 10.9948
185 2WJG GDP 11.1702
186 2ZR9 DTP 12.0419
187 1UJ2 ADP 12.0419
188 1UJ2 C5P 12.0419
189 5FG3 GDP 12.1212
190 1YRB GDP 12.1212
191 2QN6 GDP 12.1212
192 2C77 GNP 12.1212
193 4RD0 GDP 12.1212
194 3WXM GTP 12.1212
195 2C78 GNP 12.1212
196 1G7C 5GP 12.1212
197 1V8K ANP 12.1212
198 1RJ9 GCP 12.1212
199 5LB3 ADP 12.1212
200 3DKP ADP 12.1212
201 5L3V GDP 12.1212
202 2OFW ADX 12.1212
203 1G8S MET 12.1212
204 2PEZ DAT 12.1212
205 2PEZ GGZ 12.1212
206 4TL6 ANP 12.1212
207 4GOX A3P 12.1212
208 3A06 FOM 12.1212
209 3IUY AMP 12.1212
210 1OGD RIP 12.1212
211 1W0H AMP 12.1212
212 2H6B 3C4 12.5654
213 4U00 ADP 13.089
214 4LJ9 ACP 13.089
215 3FVQ ATP 13.089
216 5KSP GDP 13.1579
217 1B4P GPS 13.6126
218 1KK1 GNP 13.6364
219 3PQC GDP 13.6364
220 1G6H ADP 13.6364
221 1M7G AV2 13.6364
222 4NON GDP 13.6364
223 1SVI GDP 13.6364
224 4PX9 ADP 13.6364
225 2DPY ADP 13.6364
226 1XKV ATP 13.6364
227 4R2I ANP 13.6364
228 2C9O ADP 13.6364
229 2D7D ADP 13.6364
230 1VKJ A3P 13.6364
231 3HU3 AGS 13.6364
232 4QRH 0O2 13.6364
233 4HUT ATP 13.6364
234 1M7G ADP 13.6364
235 2GKS ADP 13.6364
236 2ATJ BHO 13.6364
237 1M7G ADX 13.6364
238 2X7I CIT 13.6364
239 3B5J 12D 14.1361
240 2CHG ANP 14.1361
241 3CX8 GSP 14.6597
242 3AB3 GDP 14.6597
243 1FP6 ADP 14.6597
244 5Y6N ADP 14.6597
245 4NCN GTP 15.1515
246 6DEF GCP 15.1515
247 1TQ4 GDP 15.1515
248 5ZXD ATP 15.1515
249 1NJF ADP 15.1515
250 1NJF AGS 15.1515
251 5AK0 8V1 15.1515
252 4Q1A UDP 15.1515
253 4Q1A 2XZ 15.1515
254 3QKT ANP 15.1515
255 2BIF ANP 15.1515
256 2BIF SIN 15.1515
257 1K6M AGS 15.1515
258 5X40 ACP 15.1515
259 2O0J ADP 15.1515
260 4PJ3 ANP 15.1515
261 1F2U ATP 15.1515
262 4PU6 ASP 15.1515
263 4A9C B5F 15.1515
264 3UIE ANP 15.1515
265 1G41 ADP 15.1515
266 5HR5 ADP 15.1515
267 3QOX SAH 15.1515
268 1F9V ADP 15.1515
269 3RLF ANP 15.1832
270 3B7G ANP 15.1832
271 1WF3 GNP 15.7068
272 1CS4 GSP 16.6667
273 6AU6 GDP 16.6667
274 2NCD ADP 16.6667
275 1OXV ANP 16.6667
276 2CDN ADP 16.6667
277 2FAH GDP 16.6667
278 4QOS ADP 16.6667
279 1P9B GDP 16.6667
280 1OFH ADP 16.6667
281 5MEX PAP 16.6667
282 4ZNL BEF ADP 16.6667
283 1NN5 ANP 16.7539
284 1NN5 2DT 16.7539
285 2JK0 ASP 16.7539
286 1PUJ GNP 17.2775
287 2OFD NGA 17.6056
288 4JLS 3ZE 17.7632
289 1RE0 GDP 18.1818
290 3ZFD ANP 18.1818
291 5TSH ANP 18.1818
292 5TSH ADP 18.1818
293 3TBK ANP 18.1818
294 6B4K ANP 18.1818
295 1NST A3P 18.1818
296 2QG6 NMN 18.1818
297 1BG2 ADP 18.3246
298 1UPT GTP 18.7134
299 1S9D GDP 19.697
300 3P4X ADP 19.697
301 1IHU AF3 19.697
302 1IHU ADP 19.697
303 4C2C ALA ALA ALA 19.697
304 1OS1 PYR 19.697
305 4PVR ASP 19.697
306 1OS1 ATP 19.697
307 4CLO XP0 19.697
308 4WZ6 ATP 19.8953
309 1DAR GDP 19.8953
310 1FQJ ALF 21.2121
311 1FQK ALF 21.2121
312 2ODE ALF GDP 21.2121
313 1FQJ GDP 21.2121
314 1FQK GDP 21.2121
315 1SVK ALF GDP 21.2121
316 1Y3A GDP 21.2121
317 6CRK GDP 21.2121
318 1GOT GDP 21.2121
319 2WHX ADP 21.2121
320 1KK8 BEF ADP 21.2121
321 1GP2 GDP 21.2121
322 5KDO GDP 21.2121
323 1B7T ADP 21.2121
324 1F5N GNP 21.2121
325 2GK6 ADP 21.2121
326 1APZ ASP 21.2121
327 1NY5 ADP 21.2121
328 2J5V PCA 21.2121
329 2JLR ANP 21.2121
330 1MR3 G3D 22.0994
331 1ZJ6 G3D 22.4599
332 1BH2 GSP 22.5131
333 2OM2 GDP 22.5131
334 1KSH GDP 22.7273
335 5U32 GDP 22.7273
336 3E70 GDP 22.7273
337 4WZA ACP 22.7273
338 4WZA ADP 22.7273
339 5BN3 ADP 22.7273
340 1G6O ADP 22.7273
341 1W7J ADP BEF 22.7273
342 3RC3 ANP 22.7273
343 2FSH ANP 22.7273
344 2YOH WMJ 22.7273
345 2Y65 ADP 23.0366
346 4V0K GDP 23.0769
347 2XTZ GSP 24.2424
348 3COB ADP 24.2424
349 4FRZ ADP 24.2424
350 1W0J ADP 24.2424
351 2CK3 ANP 24.2424
352 2XAU ADP 24.2424
353 1W0J ADP BEF 24.2424
354 2V7Q ATP 24.2424
355 2CK3 ADP 24.2424
356 1X6V ADP 24.2424
357 2BO4 FLC 24.2424
358 2V7Q ADP 24.2424
359 3H4S ADP 24.2424
360 1M2O GNP 25.2632
361 3FJG 3PG 25.6544
362 4PFO ADP 25.7576
363 2GWH A3P 25.7576
364 3TMK T5A 25.7576
365 2KIN ADP 26
366 2J73 GLC GLC GLC 27.1845
367 5HCN GCP 27.2727
368 4CVN ADP 27.2727
369 4P4T GDP 27.2727
370 5N69 ADP 27.2727
371 3QF7 ANP 27.2727
372 6G14 G4P 27.7487
373 1NRJ GTP 27.9817
374 4HI0 GDP 28.2723
375 2QTV GNP 28.7425
376 1G7S GDP 28.7879
377 1T5C ADP 29.3194
378 1XMV ADP 29.3194
379 2CE7 ADP 30.303
380 4A4Z ANP 30.303
381 2QEN ADP 30.303
382 4BAS GNP 30.3665
383 4BQS K2Q 31.25
384 4BQS ADP 31.25
385 4DCT GDP 32.4607
386 2FH5 GTP 33.3333
387 5YV5 ADP 33.3333
388 5ZBR ANP 33.3333
389 4HSE ADP 33.3333
390 2ZEJ GDP 33.6957
391 2HF9 GSP 34.0314
392 1JJV ATP 34.8485
393 5L3S GNP 34.8485
394 5L3W GDP 34.8485
395 5L3S G 34.8485
396 1FZQ GDP 35.9116
397 4B47 GDP 36.1257
398 5KSZ GCP 36.3636
399 4YS0 ADP 36.3636
400 2RGX AP5 36.3636
401 3IIJ ADP 36.3636
402 4BFW ZVW 36.3636
403 1MKY GDP 37.8788
404 3ZIA ADP 37.8788
405 3ZIA ATP 37.8788
406 5Z69 AGS 37.8788
407 3VX3 ADP 37.8788
408 1F6B GDP 39.267
409 1ZD9 GDP 39.3939
410 2VB6 ADP BEF 39.3939
411 2IS6 ADP 39.3939
412 3ZQ6 ADP ALF 39.3939
413 2WZF BGC 39.3939
414 4OI4 ATP 39.3939
415 1W5T ANP 40.9091
416 1W5T ADP 40.9091
417 1J2J GTP 40.9639
418 1O3Y GTP 40.9639
419 2WKQ GTP 42.4084
420 1Z6T ADP 42.4242
421 5OCG GNP 42.8571
422 1OW3 GDP 43.4555
423 5TB5 GDP 43.7838
424 5TAR GDP 43.7838
425 3SBD GNP 43.8503
426 4LPS GDP 43.9394
427 2J0V GDP 43.9791
428 3REF GDP 43.9791
429 5UQW GDP 44.4444
430 2W2X GSP 44.8649
431 5HPY GDP 44.8649
432 2G77 GDP 45.0262
433 2G77 AF3 45.0262
434 2GCO GNP 45.2736
435 2GCN GDP 45.2736
436 4D0N GDP 45.4054
437 1GWN GTP 45.5497
438 1RYH GNP 45.5497
439 1G4U GDP 45.6522
440 1G4U AF3 45.6522
441 1CXZ GSP 46.1538
442 1MH1 GNP 46.2366
443 1HE1 GDP 46.5909
444 1HE1 AF3 46.5909
445 4DID GDP 46.5969
446 2FJU GSP 46.6292
447 1TX4 ALF GDP 46.8927
448 3M1I GTP 47.1204
449 3GJ4 GDP 47.1204
450 3GJ7 GDP 47.1204
451 3GJ5 GDP 47.1204
452 1GRN GDP 47.1204
453 1A4R GNH 47.1204
454 1A4R GDP 47.1204
455 1GRN AF3 47.1204
456 4ITR GDP 47.1204
457 2NGR GDP 47.1204
458 3GJ8 GDP 47.1204
459 2NGR AF3 47.1204
460 1M7B GTP 47.2826
461 6FA4 GNP 47.3988
462 5UPK GNP 47.5676
463 3BC1 GNP 47.644
464 5DIF GNP 47.644
465 5UWW GNP 47.644
466 4HAT GNP 47.644
467 5UWP GNP 47.644
468 5UWT GNP 47.644
469 5UWQ GNP 47.644
470 6CIT GNP 47.644
471 5UWU GNP 47.644
472 5UWO GNP 47.644
473 5DHF GNP 47.644
474 5UWH GNP 47.644
475 5UWS GNP 47.644
476 5UWJ GNP 47.644
477 1I4D GDP 47.644
478 5UWI GNP 47.644
479 5UWR GNP 47.644
480 1IBR GNP 47.644
481 3GJ3 GDP 47.644
482 5DI9 GNP 47.644
483 5BXQ GDP 47.644
484 1E96 GTP 47.644
485 3CH5 GDP 47.644
486 1DS6 GDP 47.644
487 3GJ0 GDP 47.644
488 4U5X GNP 47.7528
489 1Z06 GNP 48.1481
490 2CJW GDP 48.1675
491 1X1R GDP 48.3146
492 3Q85 GNP 48.5207
493 3T5G GDP 48.6188
494 5WLB GNP 49.3976
495 5IRC GDP 49.4624
496 5O2T GSP 49.7041
497 2C5L GTP 49.711
498 1NF3 GNP 49.7382
499 3DDC GNP 50
Pocket No.: 2; Query (leader) PDB : 5LEF; Ligand: GTP; Similar sites found with APoc: 21
This union binding pocket(no: 2) in the query (biounit: 5lef.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 1GG6 APL 3.05344
2 5E5U MLI 3.14136
3 1T8U A3P 3.14136
4 1G3M A3P 4.71204
5 1G3M PCQ 4.71204
6 6AIC AMP 6.06061
7 2HIM ASN 6.80628
8 2X52 GYT 7.01754
9 1OBV FMN 7.69231
10 1Q20 A3P 7.8534
11 1Q20 PLO 7.8534
12 1PVC ILE SER GLU VAL 8.37696
13 1P4V GLY 9.09091
14 5DT6 GLU 12.1212
15 6HL7 CP 12.1212
16 4Z2S NDG 12.6761
17 4Z2S NAG 12.6761
18 2VHJ ADP 13.6364
19 6ACS CIT 15.1515
20 3MGB PAP 18.1818
21 4C2G ALA ALA ALA ALA 27.2727
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