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Receptor
PDB id Resolution Class Description Source Keywords
5L3V 2.3 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE CRENARCHAEAL SRP54 GTPASE BOUND TO GDP SULFOLOBUS SOLFATARICUS CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE SIGNALING PROTEIN PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 A:303;
A:302;
B:302;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
GDP B:301;
A:301;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5L3V 2.3 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE CRENARCHAEAL SRP54 GTPASE BOUND TO GDP SULFOLOBUS SOLFATARICUS CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE SIGNALING PROTEIN PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 286 families.
1 5L3V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5L3V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 1O87 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2NG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1NG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 2C03 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1JPJ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 2C04 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
7 1JPN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 5L3V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5L3V; Ligand: GDP; Similar sites found with APoc: 694
This union binding pocket(no: 1) in the query (biounit: 5l3v.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 5TIV A3P 1.58103
2 1S7N COA 1.64835
3 1P72 ADP 1.67224
4 2F5X ASP 1.67224
5 3BD9 A3P 1.78571
6 5EP2 AZU 1.95312
7 4NCN GTP 2.00669
8 4TMZ GSP 2.00669
9 4YJ1 ADP 2.00669
10 5WRJ A3P 2.00669
11 6F97 FAD 2.00669
12 2X7I CIT 2.00669
13 3CV2 OXL 2.00669
14 1I0B PEL 2.00669
15 4UTG ANP 2.00669
16 2JJK R15 2.07101
17 1VKJ A3P 2.10526
18 5NM7 GLY 2.25564
19 4AG5 ADP 2.34114
20 5TSH ADP 2.34114
21 1MKY GDP 2.34114
22 5TSH ANP 2.34114
23 4PFO ADP 2.34114
24 1E2K TMC 2.34114
25 3ZFD ANP 2.34114
26 2ZJ5 ADP 2.34114
27 5K5Z ANP 2.34114
28 1NST A3P 2.34114
29 4GID 0GH 2.34114
30 4K91 SIN 2.34114
31 6FHO FAD 2.34114
32 5HV7 RBL 2.34114
33 5WRI A3P 2.34114
34 1QO8 FAD 2.34114
35 1J99 AND 2.38908
36 2F3R G5P 2.41546
37 2RCN GDP 2.67559
38 5GOE GDP 2.67559
39 2OBM ADP 2.67559
40 4R43 GDP 2.67559
41 2Q2Y ADP 2.67559
42 2Q2Y MKR 2.67559
43 4IDN GNP 2.67559
44 3TBK ANP 2.67559
45 2O0J ADP 2.67559
46 5Y6N ADP 2.67559
47 3BFX A3P 2.67559
48 4AT0 FAD 2.67559
49 1X8J A3P 2.67559
50 4R5M NAP 2.67559
51 2VB6 ADP BEF 2.68456
52 4DKX GDP 2.77778
53 2AWN ADP 3.01003
54 1QF5 RPL 3.01003
55 1QF5 GDP 3.01003
56 3COB ADP 3.01003
57 5KSZ GCP 3.01003
58 1F9V ADP 3.01003
59 4FRZ ADP 3.01003
60 5M7P ADP 3.01003
61 5MZN ADP 3.01003
62 3ZS9 ADP ALF 3.01003
63 2WOJ ADP ALF 3.01003
64 2GWH A3P 3.02013
65 4DID GDP 3.10881
66 1FP6 ADP 3.11419
67 1A4R GNH 3.14136
68 1A4R GDP 3.14136
69 4Q1A 2XZ 3.21429
70 4Q1A UDP 3.21429
71 4WEI GLC GAL 3.2491
72 4YC7 GNP 3.31492
73 3EC1 GDP 3.34448
74 5ZXD ATP 3.34448
75 1XKV ATP 3.34448
76 2WKQ GTP 3.34448
77 2D7D ADP 3.34448
78 2I4I AMP 3.34448
79 1NHX FTB 3.34448
80 1NHX PEP 3.34448
81 4HSE ADP 3.34448
82 2GMV PEP 3.34448
83 1OS1 ATP 3.34448
84 1GR0 NAD 3.34448
85 1OS1 PYR 3.34448
86 2GMV UN8 3.34448
87 2PL3 ADP 3.38983
88 2NGR GDP 3.4188
89 2ORV 4TA 3.4188
90 5X40 ACP 3.42466
91 4WZ6 ATP 3.44828
92 5BYK OAQ 3.4749
93 5BYK A3P 3.4749
94 5H4S RAM 3.52113
95 1YZQ GNP 3.52941
96 3ICS FAD 3.57143
97 2ZX2 RAM 3.58974
98 1T8U UAP SGN IDS SGN 3.67647
99 1T8U A3P 3.67647
100 5W76 GDP 3.67893
101 2Y65 ADP 3.67893
102 4IHQ ADP 3.67893
103 5IRN ADP 3.67893
104 4PJ3 ANP 3.67893
105 4GOX A3P 3.67893
106 1NY5 ADP 3.67893
107 3QKT ANP 3.67893
108 2GQT FAD 3.73134
109 5Z69 AGS 3.76344
110 4PX9 ADP 3.76712
111 2J0V GDP 3.77358
112 4Z7X 3CX 3.78151
113 3DEF GDP 3.81679
114 5JCP GDP ALF 3.81862
115 2GCO GNP 3.9801
116 2GCN GDP 3.9801
117 1NJF ADP 4
118 1NJF AGS 4
119 1SKQ GDP 4.01338
120 1GOJ ADP 4.01338
121 5W75 GDP 4.01338
122 1YQT ADP 4.01338
123 3VMF GTP 4.01338
124 6AU6 GDP 4.01338
125 3WXM GTP 4.01338
126 1OXV ANP 4.01338
127 1WDT GTP 4.01338
128 1YTM ATP 4.01338
129 1RRC ADP 4.01338
130 4KBF AMP 4.01338
131 5IRR GSP 4.01338
132 1R6B ADP 4.01338
133 5W75 SUC 4.01338
134 2ODE ALF GDP 4.01338
135 1SVK ALF GDP 4.01338
136 4A4Z ANP 4.01338
137 2ZW5 COA 4.01338
138 6FA4 GNP 4.04624
139 2ZPT A3P 4.0678
140 2ZFI ADP 4.09836
141 1SVI GDP 4.10256
142 1W4R TTP 4.10256
143 1U0J ADP 4.11985
144 1QF9 ALF 4.12371
145 1QF9 ADP 4.12371
146 1QF9 C5P 4.12371
147 3QXC ATP 4.13223
148 1YVD GNP 4.14201
149 1OW3 GDP 4.14508
150 1BO4 COA 4.16667
151 1B0U ATP 4.19847
152 5KUT GDP 4.2328
153 5UQW GDP 4.2328
154 5OCG GNP 4.2328
155 1KSH GDP 4.30108
156 5TB5 GDP 4.32432
157 5TAR GDP 4.32432
158 6BC0 GSP 4.32432
159 5HPY GDP 4.32432
160 6BCB GSP 4.32432
161 4P3Y GDP 4.34783
162 3U6B GDP 4.34783
163 1D8T GDP 4.34783
164 2VVG ADP 4.34783
165 3U6K GDP 4.34783
166 5JBQ GDP 4.34783
167 4G5G GDP 4.34783
168 4PC3 GDP 4.34783
169 2HCJ GDP 4.34783
170 2DPY ADP 4.34783
171 2BVN GNP 4.34783
172 1KMQ GNP 4.34783
173 6B4K ANP 4.34783
174 1G6O ADP 4.34783
175 4XGU ADP 4.34783
176 2QQ0 ANP 4.34783
177 2QQ0 ADP 4.34783
178 2QQ0 TMP 4.34783
179 2QQ0 THM 4.34783
180 2ZPA ADP 4.34783
181 5YV5 ADP 4.34783
182 1Q19 SSC 4.34783
183 1Q20 A3P 4.34783
184 1Q20 PLO 4.34783
185 3NTA FAD 4.34783
186 3NTD FAD 4.34783
187 3NT6 FAD 4.34783
188 4J36 1HR 4.34783
189 4J36 FAD 4.34783
190 2D2F ADP 4.4
191 4M9Q GNP 4.40529
192 4RZ3 ADP 4.40678
193 3T5G GDP 4.41989
194 1UKZ ADP 4.4335
195 3H4S ADP 4.44444
196 1CS4 GSP 4.44444
197 1H65 GDP 4.44444
198 4XOI GTP 4.44444
199 4U5X GNP 4.49438
200 4U00 ADP 4.5082
201 4DDY DN6 4.56274
202 3PQC GDP 4.61538
203 3Q9L ATP 4.61538
204 5WDR GNP 4.67836
205 4WZA ACP 4.68227
206 4WZA ADP 4.68227
207 1G41 ADP 4.68227
208 2FAH GDP 4.68227
209 2OZE AGS 4.69799
210 3KJI ADP 4.72441
211 5KSP GDP 4.73684
212 1M7G AV2 4.73934
213 1M7G ADX 4.73934
214 1M7G ADP 4.73934
215 2X77 GDP 4.7619
216 5WLB GNP 4.81928
217 6B8B ADP 4.81928
218 1VG0 GDP 4.83092
219 1VG8 GNP 4.83092
220 2IL4 COA 4.85437
221 5DI3 GNP 4.86486
222 2BD0 NAP 4.91803
223 1RYH GNP 4.92611
224 5SZH GNP 4.92611
225 3CPJ GDP 4.93274
226 2EW1 GNP 4.97512
227 5IRC GDP 4.97512
228 5HCN GCP 4.98084
229 4YMU ATP 5
230 1BG2 ADP 5.01672
231 5M04 GDP 5.01672
232 3DC4 ADP 5.01672
233 4YS0 ADP 5.01672
234 6DEF GCP 5.01672
235 3IO3 ADP 5.01672
236 4GBM A3P 5.01672
237 1K6M AGS 5.01672
238 2HIM ASP 5.01672
239 5MEX SZZ 5.01672
240 2HIM ASN 5.01672
241 5MEX PAP 5.01672
242 2A2C ADP 5.01672
243 2A2C NG1 5.01672
244 4BAS GNP 5.02513
245 3QVV A3P 5.08475
246 3QVV 3QV 5.08475
247 3TMK T5A 5.09259
248 4X8O AP5 5.14019
249 1UJ2 ADP 5.15873
250 1UJ2 C5P 5.15873
251 2ZTS ADP 5.17928
252 4KFU ACP 5.18868
253 1OE0 TTP 5.21739
254 1R0X ATP 5.24476
255 1W7J ADP BEF 5.29801
256 1G7C 5GP 5.31915
257 4WOP CTP 5.33333
258 3SBD GNP 5.34759
259 4D0N GDP 5.35117
260 1V8K ANP 5.35117
261 4NE2 ADP 5.35117
262 4NE2 SH2 5.35117
263 2CE7 ADP 5.35117
264 5H68 AGS 5.35117
265 4ITR GDP 5.35117
266 3RLF ANP 5.35117
267 1VG1 GDP 5.40541
268 1VG9 GDP 5.40541
269 3RWO GDP 5.40541
270 1YZN GNP 5.40541
271 1G6H ADP 5.44747
272 1NF3 GNP 5.46875
273 1KY3 GDP 5.49451
274 2F9L GDP 5.52764
275 4XTR ATP 5.52995
276 4XTR ADP 5.52995
277 4XVU ATP 5.52995
278 2G77 GDP 5.55556
279 5JCZ GDP 5.58659
280 5J1J ANP 5.61404
281 2WIC GNP 5.61798
282 4TMK T5A 5.6338
283 4LX0 BEF GDP 5.64972
284 3B7G ANP 5.65217
285 4QOS ADP 5.66038
286 4J0Q GDP 5.68562
287 1TAD GDP 5.68562
288 1TAD ALF 5.68562
289 1X6V ADP 5.68562
290 3EZ2 ADP 5.68562
291 3V2U ATP 5.68562
292 3IUY AMP 5.70175
293 3H86 AP5 5.72917
294 4LHW GNP 5.74713
295 3B5J 12D 5.76132
296 1JJ7 ADP 5.76923
297 5EXT ADP 5.76923
298 1DAK ADP 5.80357
299 1DAK DPU 5.80357
300 1Z06 GNP 5.82011
301 2B8T THM 5.8296
302 1TU3 GNP 5.84795
303 3W5J GDP 5.88235
304 2A9K GDP 5.88235
305 1R2Q GNP 5.88235
306 5O2T GSP 5.88235
307 1D2N ANP 5.88235
308 4R98 GNH 5.90406
309 4TL6 ANP 5.92885
310 5U32 GDP 5.9322
311 2W58 ADP 5.94059
312 1NRJ GTP 5.9633
313 2VWT PYR 5.99251
314 4D81 ADP 6.00707
315 3FWY ADP 6.02007
316 1XX6 ADP 6.02007
317 1SVM ATP 6.02007
318 4ZKD GDP 6.02007
319 3KTA AP5 6.04396
320 1F6B GDP 6.06061
321 1YZG GDP 6.14525
322 5MVR ADP 6.17284
323 5G3Y ADP 6.19469
324 3A1S GDP 6.20155
325 4ZNL BEF ADP 6.20438
326 1S8F GDP 6.21469
327 2BEK ATP 6.22568
328 5H67 ATP 6.25
329 2IXE ATP 6.27306
330 4LC1 GDP 6.35452
331 1IWE IMP 6.35452
332 3MD0 GDP 6.35452
333 3WYA GDP 6.35452
334 1G7S GDP 6.35452
335 5FHD ADP ALF 6.35452
336 5FTB ANP 6.35452
337 3NHB ADP 6.35452
338 3FVQ ATP 6.35452
339 5VHC BEF ADP 6.35452
340 2C9O ADP 6.35452
341 4IOK XPO 6.35452
342 4IOK ADP 6.35452
343 5I0H ADP BEF 6.35452
344 1GRN GDP 6.40394
345 1VHT BA3 6.42202
346 4MKF AP5 6.45161
347 3CNL GNP 6.48855
348 2ZEJ GDP 6.52174
349 4UXH T5A 6.52174
350 2QG6 NMN 6.53266
351 1LVG ADP 6.56566
352 1TX4 ALF GDP 6.56566
353 3Q72 GNP 6.62651
354 4R2I ANP 6.66667
355 4QRH 0O2 6.66667
356 4P4T GDP 6.68896
357 5FG3 GDP 6.68896
358 2XT3 ADP 6.68896
359 2C78 GNP 6.68896
360 4B47 GDP 6.68896
361 2WHX ADP 6.68896
362 5LB3 ADP 6.68896
363 4KVA GTP 6.68896
364 3EWA ANP 6.68896
365 2C77 GNP 6.68896
366 5UPK GNP 6.68896
367 5IFS ADP 6.68896
368 3HU3 AGS 6.68896
369 2QEN ADP 6.68896
370 5N69 ADP 6.68896
371 2JLR ANP 6.68896
372 4ZDJ UTP 6.68896
373 4Y4V DAL 6.68896
374 2B8W ALF 5GP 6.68896
375 2Z5F A3P 6.71141
376 5G41 AP5 6.72646
377 2XTZ GSP 6.77966
378 3GJ3 GDP 6.78733
379 3GJ0 GDP 6.78733
380 3GJ4 GDP 6.78733
381 3GJ5 GDP 6.78733
382 3GJ8 GDP 6.78733
383 1L2T ATP 6.80851
384 5XC5 GTP 6.81818
385 3NKV GNP 6.85714
386 4MKG AP5 6.91244
387 1ZD9 GDP 6.91489
388 5BXQ GDP 6.94444
389 1IBR GNP 6.94444
390 2CDN ADP 6.96517
391 5YT0 GDP 7.02341
392 1P9B GDP 7.02341
393 3SFV GDP 7.02341
394 3TKL GTP 7.02341
395 3TNF GNP 7.02341
396 1IN4 ADP 7.02341
397 4ITM ATP 7.02341
398 1Z08 GNP 7.05882
399 3AQ4 GDP 7.06522
400 1Y63 ADP 7.06522
401 5OEC GDP 7.1066
402 4E03 ADP 7.28155
403 6BCA GSP 7.28477
404 6CI9 NAP 7.33591
405 1D2E GDP 7.35786
406 5H7K GDP 7.35786
407 5H7J GCP 7.35786
408 1SQ5 ADP 7.35786
409 5HR5 ADP 7.35786
410 1LVK MNT BEF 7.35786
411 4OHY ANP 7.35786
412 1WF3 GNP 7.35786
413 1OFH ADP 7.35786
414 1OYY AGS 7.35786
415 3PCR GTP 7.40741
416 2O66 FLC 7.40741
417 1F2U ATP 7.43243
418 4C4P GNP 7.47664
419 2ZE7 DST 7.50988
420 2ZE7 AMP 7.50988
421 2ZFZ ARG 7.59494
422 1YRB GDP 7.63359
423 3Q85 GNP 7.69231
424 3CX8 GSP 7.69231
425 4LYA ATP 7.69231
426 4V0K GDP 7.69231
427 3AB3 GDP 7.69231
428 1B7T ADP 7.69231
429 3GJX GTP 7.69231
430 1ZCB GDP 7.69231
431 1O3Y GTP 7.83133
432 2J59 GTP 7.83133
433 3E5H GNP 7.86517
434 2W83 GTP 7.87879
435 1RE0 GDP 7.92683
436 1S9D GDP 7.92683
437 2HF9 GSP 7.9646
438 3N5C GDP 8.02469
439 2IS6 ADP 8.02676
440 2FNA ADP 8.02676
441 2BME GNP 8.06452
442 4KAX GTP 8.07453
443 5GVR LMR 8.11966
444 5VGR GDP 8.12065
445 1Z0K GTP 8.13953
446 1XEX ATP 8.13953
447 3GJ7 GDP 8.16327
448 2OFW ADX 8.17308
449 5EE5 GTP 8.18713
450 1UPT GTP 8.18713
451 4QM7 GTP 8.18713
452 2RGX AP5 8.25243
453 5BN3 ADP 8.3612
454 2WMO GTP 8.3612
455 3P4X ADP 8.3612
456 3FKQ ATP 8.3612
457 1QHG ATP 8.3612
458 2R42 FPS 8.3612
459 1CR1 TTP 8.44595
460 5BQ5 ADP BEF 8.46561
461 3R96 AMP 8.51064
462 3R96 ACO 8.51064
463 1KK8 BEF ADP 8.63309
464 3ZQ6 ADP ALF 8.64198
465 4XSH GSP 8.6758
466 1WA5 GTP 8.69565
467 1DAR GDP 8.69565
468 1W0J ADP 8.69565
469 4BFW ZVW 8.69565
470 1W0J ADP BEF 8.69565
471 1G8S MET 8.69565
472 3REF GDP 8.76289
473 3VX3 ADP 8.87097
474 2CK3 ANP 8.90411
475 2CK3 ADP 8.90411
476 3AB4 THR 8.98876
477 2KIN ADP 9
478 1TQ4 GDP 9.0301
479 2FSH ANP 9.0301
480 5XDR ADP 9.0301
481 1Z6T ADP 9.0301
482 3ITJ CIT 9.0301
483 3DOE GTP 9.09091
484 3T12 GDP ALF 9.09091
485 3T1O GDP 9.09091
486 1AQU A3P 9.09091
487 1KO8 6PG 9.14286
488 1JI0 ATP 9.16667
489 4NON GDP 9.23077
490 2JAQ DCP 9.26829
491 2EFE GNH 9.3633
492 3RC3 ANP 9.36455
493 4CVN ADP 9.42408
494 1OIV GDP 9.42408
495 1OIX GDP 9.42408
496 1M2O GNP 9.47368
497 1Z0F GDP 9.49721
498 2PEZ DAT 9.49721
499 2PEZ GGZ 9.49721
500 1FQK GDP 9.52381
501 5ZB0 TYD 9.59596
502 5ZB0 ADP 9.59596
503 1Z83 AP5 9.69388
504 1T5C ADP 9.699
505 1G3M PCQ 9.86395
506 1G3M A3P 9.86395
507 2CJW GDP 9.89583
508 3LXR GDP 9.89583
509 3UIE ANP 10
510 2YOH WMJ 10
511 2QN6 GDP 10.0334
512 2BIF ANP 10.0334
513 2BIF SIN 10.0334
514 4RD0 GDP 10.0334
515 1IHU AF3 10.0334
516 1IHU ADP 10.0334
517 2J5V PCA 10.0334
518 5UIV ADP 10.1322
519 1ZJ6 G3D 10.1604
520 1Z0J GTP 10.1695
521 3FB4 AP5 10.1852
522 1JJV ATP 10.1942
523 4LPS GDP 10.3306
524 4OI4 ATP 10.4348
525 2PZE ATP 10.4803
526 4NU0 AP5 10.5991
527 2V7Q ATP 10.6061
528 2V7Q ADP 10.6061
529 2WJG GDP 10.6383
530 2XTN GTP 10.6838
531 4TTQ ATP 10.6977
532 3BFV ADP 10.7011
533 5I34 GDP 10.7023
534 5AK0 8V1 10.7023
535 2FJU GSP 10.7023
536 6FAA ADP 10.7023
537 2QTV GNP 10.7784
538 2HT6 GDP 10.9195
539 4YLG GDP 10.9827
540 3LRE ADP 11.0368
541 2OM2 GDP 11.1111
542 2BCG GDP 11.165
543 6CRK GDP 11.2676
544 1GP2 GDP 11.2676
545 1Z2A GDP 11.3095
546 5W7Q GDP 11.3712
547 5LTJ ADP 11.3712
548 5LTJ BEF 11.3712
549 1XP8 AGS 11.4754
550 1CXZ GSP 11.6279
551 2GJ8 ALF GDP 11.6279
552 4BQS ADP 11.9318
553 4BQS K2Q 11.9318
554 2CHG ANP 11.9469
555 6C90 ADP 12.0401
556 2WJH GDP 12.0482
557 2WJH FLC 12.0482
558 5LEF GTP 12.1212
559 1AKY AP5 12.2727
560 4PPF FLC 12.2857
561 2Y8E GNP 12.2905
562 1KK1 GNP 12.3746
563 5G5G MCN 12.3746
564 1H74 ADP 12.5
565 2A5F GTP 12.5714
566 4HDO GNP 12.5749
567 4HDQ GNP 12.5749
568 3X1Z GNP 12.5749
569 1XMV ADP 12.6404
570 3ZIA ATP 12.6984
571 3ZIA ADP 12.6984
572 2NCD ADP 12.709
573 3MGB PAP 12.709
574 2FFQ GSP 12.8655
575 1ZIN AP5 12.9032
576 6A20 ADP 13.0435
577 4DCT GDP 13.0435
578 4D0G GTP 13.0435
579 5ZBR ANP 13.0435
580 5AHO TLA 13.0435
581 5E5U MLI 13.0653
582 4KVG GTP 13.0769
583 1UAD GNP 13.1313
584 4LJ9 ACP 13.2743
585 1S3G AP5 13.3641
586 5KDO GDP 13.5135
587 2W2X GSP 13.5135
588 1ZUI SKM 13.6905
589 1GOT GDP 13.6986
590 2QZ4 ADP 13.7405
591 3DKP ADP 13.8776
592 1HTW ADP 13.9241
593 4ZG4 VO4 ADP 14.0468
594 3BER AMP 14.0562
595 1FQJ GDP 14.2857
596 3QBT GNP 14.2857
597 5UWO GNP 14.3813
598 3WYF GTP 14.3813
599 5UWH GNP 14.3813
600 5UWQ GNP 14.3813
601 5UWS GNP 14.3813
602 5UWP GNP 14.3813
603 6CIT GNP 14.3813
604 5DHF GNP 14.3813
605 5UWW GNP 14.3813
606 5UWT GNP 14.3813
607 4HAT GNP 14.3813
608 3WYG GTP 14.3813
609 2ZR9 DTP 14.3813
610 5UWI GNP 14.3813
611 5DIF GNP 14.3813
612 5UWR GNP 14.3813
613 5UWJ GNP 14.3813
614 5DI9 GNP 14.3813
615 2JK0 ASP 14.3813
616 4FCW ADP 14.4695
617 3A4M ADP 14.6154
618 3TK1 GDP 14.7157
619 2GK6 ADP 14.7157
620 4V03 ADP 14.786
621 3BOS CDP 14.876
622 2V2V V12 15.1292
623 5O74 GDP 15.2284
624 4YDS ATP 15.3509
625 2A5J GDP 15.3846
626 2GKS ADP 15.3846
627 2VOH CIT 15.3846
628 5J1S ATP 15.8451
629 3QF7 ANP 16
630 1QHH ATP 16.1677
631 4JLV ADP 16.3569
632 5Z2M GTP 16.6667
633 3T34 GDP 16.7224
634 3RAB GNP 17.1598
635 3MJH GTP 17.6471
636 1NN5 2DT 17.6744
637 1NN5 ANP 17.6744
638 1EK0 GNP 18.2353
639 1D5C GDP 18.5185
640 2HV8 GTP 18.75
641 1R4A GNP 18.7879
642 2C5L GTP 19.0751
643 3MWL 8OX 19.398
644 5E95 GDP 19.6429
645 1W5T ADP 19.7324
646 1W5T ANP 19.7324
647 6BVK GNP 19.7605
648 6BVJ GNP 19.7605
649 6D5J GNP 19.7605
650 6D5E GNP 19.7605
651 6BVL GNP 19.7605
652 6D5H GNP 19.7605
653 6D5G GNP 19.7605
654 1LFD GNP 19.7605
655 6D59 GNP 19.7605
656 6BVM GNP 19.7605
657 6D5L GNP 19.7605
658 6D56 GNP 19.7605
659 6BVI GNP 19.7605
660 6D55 GNP 19.7605
661 6D5M GNP 19.7605
662 6D5V GNP 19.7605
663 1GXU 2HP 19.7802
664 1CLU DBG 19.8795
665 1WQ1 GDP 19.8795
666 2UZI GTP 19.8795
667 1NVV GNP 19.8795
668 3DDC GNP 19.8795
669 1WQ1 AF3 19.8795
670 6G14 G4P 20.4082
671 5LLB 6YZ 20.9125
672 3IIJ ADP 21.1111
673 5WC2 ADP 21.4047
674 4IEE AGS 21.7391
675 3DZD ADP 22.7425
676 2CBZ ATP 24.4726
677 3AFN NAP 24.8062
678 3FYH ADP 25.0836
679 4HI0 GDP 25.1256
680 4H1V GNP 26.087
681 2XAU ADP 26.087
682 2D7C GTP 26.1905
683 1Z0A GDP 27.0115
684 5XKT GNP 27.5
685 4ZI2 GNP 27.8947
686 4GOJ GNP 28.0423
687 2GDJ ANP 28.4091
688 6AIC AMP 29.9065
689 5UWU GNP 30
690 3BC1 GNP 30.5085
691 1J2J GTP 31.1111
692 1GUA GNP 33.3333
693 3KUD GDP 34.5679
694 3WY9 GDP 43.75
Pocket No.: 2; Query (leader) PDB : 5L3V; Ligand: GDP; Similar sites found with APoc: 13
This union binding pocket(no: 2) in the query (biounit: 5l3v.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 1PN0 IPH 2.34114
2 1PN0 FAD 2.34114
3 5GQI CTP 2.42915
4 2VHJ ADP 2.67559
5 1IZC PYR 3.01003
6 4B5W PYR 3.90625
7 1KNR FAD 4.34783
8 1Q19 APC 4.34783
9 3FIU POP 4.81928
10 2RGJ FAD 5.35117
11 5ZYN FAD 6.35452
12 3CGB FAD 7.35786
13 5URY PAM 17.1233
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