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Receptor
PDB id Resolution Class Description Source Keywords
5L3R 2.5 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE GTPASE HETERODIMER OF CHLOROPLAST SRP54 AND ARABIDOPSIS THALIANA ARABIDOPSIS THALIANA CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG D:401;
A:402;
C:401;
B:402;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GCP A:401;
B:401;
D:402;
C:402;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
521.208 C11 H18 N5 O13 P3 c1nc2...
GOL B:403;
D:403;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5L3R 2.5 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE GTPASE HETERODIMER OF CHLOROPLAST SRP54 AND ARABIDOPSIS THALIANA ARABIDOPSIS THALIANA CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 286 families.
1 5L3R - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5L3R - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 5L3R - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GCP; Similar ligands found: 142
No: Ligand ECFP6 Tc MDL keys Tc
1 GCP 1 1
2 GP3 0.8375 0.948718
3 GDP 0.82716 0.973684
4 GNH 0.817073 0.961039
5 GP2 0.804878 0.987013
6 GTP 0.797619 0.973684
7 G1R 0.788235 0.961039
8 9GM 0.77907 0.948718
9 GNP 0.77907 0.948718
10 GSP 0.77907 0.925
11 G 0.765432 0.960526
12 5GP 0.765432 0.960526
13 G2P 0.758621 0.987013
14 GMV 0.755814 0.948718
15 G2R 0.736264 0.961538
16 Y9Z 0.715789 0.903614
17 GAV 0.703297 0.936709
18 G3A 0.701031 0.948718
19 GKE 0.697917 0.936709
20 GDC 0.697917 0.936709
21 GDD 0.697917 0.936709
22 ALF 5GP 0.696629 0.86747
23 G5P 0.693878 0.948718
24 GPG 0.691489 0.936709
25 GFB 0.690722 0.936709
26 GTG 0.690722 0.91358
27 GDR 0.690722 0.936709
28 GDP AF3 0.688172 0.86747
29 YGP 0.6875 0.879518
30 6CK 0.683673 0.91358
31 JB2 0.67 0.936709
32 GKD 0.67 0.936709
33 GDX 0.663366 0.948718
34 GPD 0.663366 0.925926
35 ALF GDP 0.652632 0.86747
36 GDP ALF 0.652632 0.86747
37 JB3 0.632075 0.925
38 GMP 0.62963 0.857143
39 NGD 0.626168 0.936709
40 G3D 0.610526 0.960526
41 2MD 0.609091 0.870588
42 G G 0.607843 0.924051
43 G4P 0.597938 0.960526
44 U2G 0.59633 0.91358
45 FEG 0.59633 0.880952
46 GDP 7MG 0.596154 0.888889
47 MGD 0.59292 0.870588
48 CAG 0.59292 0.860465
49 ZGP 0.590909 0.870588
50 0O2 0.59 0.960526
51 CG2 0.585586 0.91358
52 MD1 0.57265 0.892857
53 PGD 0.57265 0.902439
54 3GP 0.566667 0.922078
55 TPG 0.563025 0.842697
56 DBG 0.563025 0.925
57 FE9 0.550847 0.760417
58 ACP 0.548387 0.922078
59 GH3 0.54 0.973684
60 GCP G 0.538462 0.922078
61 A G 0.534483 0.911392
62 2GP 0.532609 0.935065
63 G4M 0.53125 0.860465
64 U A G G 0.529915 0.911392
65 GPX 0.529412 0.922078
66 DGI 0.525773 0.924051
67 G A A A 0.521368 0.9
68 IDP 0.520833 0.947368
69 DGT 0.52 0.924051
70 AKW 0.513043 0.869048
71 P1G 0.510417 0.873418
72 G1G 0.504132 0.902439
73 G1R G1R 0.5 0.901235
74 R5I 0.5 0.922078
75 BGO 0.5 0.901235
76 R7I 0.5 0.922078
77 PGD O 0.496 0.831461
78 G U 0.495726 0.878049
79 ACQ 0.494949 0.922078
80 P2G 0.489583 0.860759
81 GGM 0.487395 0.879518
82 MGP 0.485149 0.936709
83 6G0 0.480392 0.936709
84 6YZ 0.480392 0.922078
85 DGP 0.479167 0.911392
86 DG 0.479167 0.911392
87 GPC 0.47541 0.858824
88 G C 0.475 0.878049
89 4TC 0.470085 0.876543
90 IMP 0.46875 0.934211
91 GTA 0.464912 0.91358
92 G2Q 0.453704 0.961538
93 A2D 0.452632 0.871795
94 G G G C 0.452381 0.890244
95 G7M 0.44898 0.924051
96 AT4 0.44898 0.8625
97 APC G U 0.448 0.8875
98 SGP 0.444444 0.807229
99 BA3 0.443299 0.871795
100 G G G RPC 0.439024 0.853659
101 B4P 0.438776 0.871795
102 AP5 0.438776 0.871795
103 ADP 0.438776 0.896104
104 A G C C 0.4375 0.888889
105 ANP 0.436893 0.873418
106 G C C C 0.435115 0.901235
107 AN2 0.434343 0.884615
108 M33 0.43 0.860759
109 A12 0.428571 0.910256
110 AP2 0.428571 0.910256
111 A G U 0.427536 0.86747
112 35G 0.427184 0.909091
113 C2E 0.427184 0.897436
114 PCG 0.427184 0.909091
115 HEJ 0.425743 0.896104
116 ATP 0.425743 0.896104
117 5GP 5GP 0.423077 0.860759
118 G U34 0.422764 0.86747
119 AR6 0.421569 0.871795
120 AQP 0.421569 0.896104
121 5FA 0.421569 0.896104
122 APR 0.421569 0.871795
123 AGS 0.417476 0.851852
124 AD9 0.417476 0.873418
125 SAP 0.417476 0.851852
126 UP5 0.416667 0.851852
127 CA0 0.415842 0.873418
128 ATF 0.415094 0.8625
129 HFD 0.413462 0.851852
130 A G U U 0.412587 0.86747
131 A1R 0.409091 0.841463
132 01G 0.408696 0.880952
133 PRT 0.408696 0.934211
134 APC 0.407767 0.910256
135 DG DG 0.40708 0.86747
136 A4P 0.406504 0.848837
137 UCG 0.406015 0.888889
138 7DD 0.405941 0.883117
139 93A 0.405941 0.813953
140 6AD 0.40566 0.821429
141 ADX 0.401961 0.790698
142 AGO 0.401575 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found with APoc: 652
This union binding pocket(no: 1) in the query (biounit: 5l3r.bio2) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 1ZY5 ANP 2.04778
2 1JPA ANP 2.32558
3 4QOS ADP 2.64151
4 4PFO ADP 2.73038
5 5M7P ADP 2.73038
6 5EP2 AZU 2.73438
7 1YVD GNP 2.95858
8 2W58 ADP 2.9703
9 2XTZ GSP 2.99003
10 2FNA ADP 2.99003
11 4LYA ATP 2.99003
12 3DZD ADP 2.99003
13 1E2K TMC 2.99003
14 1TQ4 GDP 3.07167
15 1LDN OXM 3.07167
16 6ACS CIT 3.10078
17 3BOS CDP 3.30579
18 1WDT GTP 3.32226
19 4ZKD GDP 3.32226
20 2FAH GDP 3.32226
21 1OS1 ATP 3.32226
22 1XKV ATP 3.32226
23 1OS1 PYR 3.32226
24 4Z7X 3CX 3.36134
25 5NM7 GLY 3.38346
26 2WHX ADP 3.41297
27 1KK1 GNP 3.41297
28 5KSZ GCP 3.41297
29 2JLR ANP 3.41297
30 4IHQ ADP 3.41297
31 4AT0 FAD 3.41297
32 1G41 ADP 3.6036
33 2AWN ADP 3.65448
34 5W75 GDP 3.65448
35 5W7Q GDP 3.65448
36 2PL3 ADP 3.65448
37 1NHX PEP 3.65448
38 1NHX FTB 3.65448
39 2X7I CIT 3.65448
40 2GMV UN8 3.65448
41 2Q2Y ADP 3.65448
42 2Q2Y MKR 3.65448
43 1RRC ADP 3.65448
44 1Z06 GNP 3.7037
45 1D5C GDP 3.7037
46 1P9B GDP 3.75427
47 5I34 GDP 3.75427
48 4Y4V DAL 3.75427
49 3ZFD ANP 3.75427
50 1P9B HDA 3.75427
51 5H4S RAM 3.87324
52 3K7S R52 3.91061
53 3IUY AMP 3.94737
54 4TL6 ANP 3.95257
55 3FKQ ATP 3.98671
56 1DNP MHF 3.98671
57 5Y6N ADP 3.98671
58 1NST A3P 3.98671
59 4P4T GDP 4.09556
60 5YT0 GDP 4.09556
61 3WIR BGC 4.09556
62 3KC1 2T6 4.09556
63 2DPY ADP 4.09556
64 1V8K ANP 4.09556
65 1YZQ GNP 4.11765
66 4R8L ASP 4.15584
67 5BYK OAQ 4.2471
68 5BYK A3P 4.2471
69 5IRR GSP 4.43686
70 1NY5 ADP 4.43686
71 3KN5 ANP 4.43686
72 3DC4 ADP 4.43686
73 5LEF GTP 4.54545
74 1VHT BA3 4.58716
75 5WC2 ADP 4.65116
76 4BFW ZVW 4.65116
77 5KSP GDP 4.73684
78 6AU6 GDP 4.77816
79 6B4K ANP 4.77816
80 4TQK NAG 4.77816
81 4YJ1 ADP 4.77816
82 4RKK GLC GLC GLC GLC GLC GLC 4.77816
83 1G6O ADP 4.77816
84 6FAA ADP 4.77816
85 1OYY AGS 4.77816
86 3FVQ ATP 4.77816
87 3EZ2 ADP 4.77816
88 1DKU AP2 4.77816
89 3NHB ADP 4.98339
90 2C78 GNP 4.98339
91 1WF3 GNP 4.98339
92 2C77 GNP 4.98339
93 2RCN GDP 4.98339
94 5C9P FUC 4.98339
95 4PJ3 ANP 4.98339
96 4YS0 ADP 4.98339
97 2VVG ADP 4.98339
98 2NCD ADP 4.98339
99 3BD9 A3P 5
100 2F9L GDP 5.02513
101 5U32 GDP 5.08475
102 4DKX GDP 5.09259
103 1T5C ADP 5.11945
104 1IWE IMP 5.11945
105 4TTQ ATP 5.11945
106 1NJF AGS 5.2
107 1NJF ADP 5.2
108 1OIX GDP 5.2356
109 1OIV GDP 5.2356
110 4M9Q GNP 5.28634
111 3DKP ADP 5.30612
112 1S8F GDP 5.31561
113 2ZJ5 ADP 5.31561
114 5K5Z ANP 5.31561
115 3RLF ANP 5.40541
116 1CLU DBG 5.42169
117 1TAD ALF 5.46075
118 1TAD GDP 5.46075
119 5GOE GDP 5.46075
120 5W76 GDP 5.46075
121 1YQT ADP 5.46075
122 5YV5 ADP 5.46075
123 1Z0F GDP 5.58659
124 4U5X GNP 5.61798
125 2B8W ALF 5GP 5.64784
126 2BIF ANP 5.64784
127 2BIF SIN 5.64784
128 5ZXD ATP 5.64784
129 1SVM ATP 5.64784
130 4AF0 MOA 5.64784
131 4LX0 BEF GDP 5.64972
132 3DOE GTP 5.72917
133 2CHG ANP 5.75221
134 2A5J GDP 5.75916
135 6G14 G4P 5.80205
136 5JCZ GDP 5.80205
137 3KJI ADP 5.90551
138 1KSH GDP 5.91398
139 1ZUI SKM 5.95238
140 1G7S GDP 5.98007
141 1LVK MNT BEF 5.98007
142 3Q72 GNP 6.0241
143 3B7G ANP 6.08696
144 2J0V GDP 6.13208
145 3WYA GDP 6.14334
146 1DAR GDP 6.14334
147 2CUN 3PG 6.14334
148 3WY9 GDP 6.14334
149 4KVA GTP 6.14334
150 5IRN ADP 6.14334
151 2Y8E GNP 6.14525
152 4YMU ATP 6.25
153 1R0X ATP 6.29371
154 3FWY ADP 6.31229
155 4R43 GDP 6.31229
156 1GOJ ADP 6.31229
157 4IEE AGS 6.31229
158 1VKJ A3P 6.31579
159 1Z0A GDP 6.32184
160 5OCG GNP 6.34921
161 2OZE AGS 6.37584
162 2WJG GDP 6.38298
163 3BFX A3P 6.41892
164 4ZG4 VO4 ADP 6.48464
165 3RWO GDP 6.48649
166 2QZ4 ADP 6.48855
167 4WEI GLC GAL 6.4982
168 4RD0 GDP 6.50602
169 6AIC AMP 6.54206
170 4IOK ADP 6.61896
171 4IOK XPO 6.61896
172 2IXE ATP 6.64207
173 1XP8 AGS 6.64452
174 1D2E GDP 6.64452
175 2C9O ADP 6.64452
176 5I0H ADP BEF 6.64452
177 3QKT ANP 6.64452
178 4R2I ANP 6.66667
179 5G41 AP5 6.72646
180 2CJW GDP 6.77083
181 3PCR GTP 6.79012
182 4E03 ADP 6.79612
183 1FQK GDP 6.80272
184 2WKQ GTP 6.82594
185 1ZCB GDP 6.82594
186 4FCW ADP 6.82594
187 3IO3 ADP 6.82594
188 4LJ9 ACP 6.82594
189 1YTM ATP 6.82594
190 3CNL GNP 6.87023
191 5KUT GDP 6.87831
192 4MKF AP5 6.91244
193 3BY9 SIN 6.92308
194 3SBD GNP 6.95187
195 4XGU ADP 6.97674
196 5N69 ADP 7.03518
197 1H65 GDP 7.03704
198 6DZN AE3 7.04225
199 5UIV ADP 7.04846
200 3ZS9 ADP ALF 7.16724
201 2WOJ ADP ALF 7.16724
202 1X6V ADP 7.16724
203 3LRE ADP 7.16724
204 2ZTS ADP 7.17131
205 1SVI GDP 7.17949
206 2WJH GDP 7.22892
207 2WJH FLC 7.22892
208 1YZG GDP 7.26257
209 1SKQ GDP 7.30897
210 3WXM GTP 7.30897
211 4HSE ADP 7.30897
212 1CR1 TTP 7.30897
213 5H68 AGS 7.35294
214 2VB6 ADP BEF 7.38255
215 3N5C GDP 7.40741
216 3TNF GNP 7.47126
217 1ZJ6 G3D 7.48663
218 3WYF GTP 7.50853
219 2EFE GNH 7.50853
220 3P4X ADP 7.50853
221 4NE2 ADP 7.50853
222 4NE2 SH2 7.50853
223 2FSH ANP 7.50853
224 4KBF AMP 7.50853
225 5IRC GDP 7.52688
226 4QM7 GTP 7.60234
227 1G7C 5GP 7.6412
228 4J0Q GDP 7.6412
229 5FG3 GDP 7.6412
230 4OHY ANP 7.6412
231 1R6B ADP 7.6412
232 3GJ5 GDP 7.69231
233 1JJ7 ADP 7.69231
234 4KAX GTP 7.69231
235 3RAB GNP 7.69231
236 3GJ8 GDP 7.69231
237 3GJ4 GDP 7.69231
238 3GJ3 GDP 7.69231
239 3GJ0 GDP 7.69231
240 3AB3 GDP 7.72358
241 1AKY AP5 7.72727
242 1WK8 VMS 7.73196
243 1Z2A GDP 7.7381
244 4U00 ADP 7.78689
245 2ODE ALF GDP 7.80142
246 2CE7 ADP 7.84983
247 2GWH A3P 7.84983
248 3FIU POP 7.84983
249 3QXC ATP 7.85124
250 1IBR GNP 7.87037
251 3CX8 GSP 7.88177
252 2ZFI ADP 7.9235
253 5XC5 GTP 7.95455
254 1QF5 RPL 7.97342
255 1QF5 GDP 7.97342
256 5IFS ADP 7.97342
257 5AK0 8V1 7.97342
258 3HU3 AGS 7.97342
259 2A2C ADP 7.97342
260 2A2C NG1 7.97342
261 1Q19 APC 7.97342
262 1LVG ADP 8.08081
263 2XTN GTP 8.11966
264 3QVV A3P 8.13559
265 3U6B GDP 8.19113
266 2FFQ GSP 8.19113
267 2EW1 GNP 8.19113
268 2BVN GNP 8.19113
269 5JBQ GDP 8.19113
270 4G5G GDP 8.19113
271 1D8T GDP 8.19113
272 3EC1 GDP 8.19113
273 3U6K GDP 8.19113
274 4IDN GNP 8.19113
275 3R7F CP 8.19113
276 1GOT GDP 8.21918
277 2BCG GDP 8.30565
278 5JCP GDP ALF 8.30565
279 5M04 GDP 8.30565
280 2J5V PCA 8.30565
281 4KVG GTP 8.33333
282 4ITR GDP 8.37696
283 1A4R GNH 8.37696
284 1A4R GDP 8.37696
285 2NGR GDP 8.37696
286 4ZNL BEF ADP 8.39416
287 2WMO GTP 8.42105
288 3E5H GNP 8.42697
289 1O3Y GTP 8.43373
290 2J59 GTP 8.43373
291 1J2J GTP 8.43373
292 2CBZ ATP 8.43882
293 4WOP CTP 8.44444
294 4TMK T5A 8.4507
295 1W0J ADP 8.45588
296 1W0J ADP BEF 8.45588
297 3Q9L ATP 8.46154
298 4R98 GNH 8.48709
299 4TMZ GSP 8.53242
300 4NCN GTP 8.53242
301 1S9D GDP 8.53659
302 1RE0 GDP 8.53659
303 5GVR LMR 8.54701
304 1F6B GDP 8.58586
305 3ZQ6 ADP ALF 8.63787
306 1IHU ADP 8.63787
307 1IHU AF3 8.63787
308 5VHC BEF ADP 8.63787
309 3AQ4 GDP 8.69565
310 1UPT GTP 8.77193
311 1KY3 GDP 8.79121
312 6B8B ADP 8.83534
313 4YC7 GNP 8.83978
314 1GRN GDP 8.86699
315 2O0J ADP 8.87372
316 1SQ5 ADP 8.87372
317 2BEK ATP 8.94942
318 4V03 ADP 8.94942
319 1BG2 ADP 8.9701
320 1OXV ANP 8.9701
321 1P72 ADP 8.9701
322 4HDQ GNP 8.98204
323 4HDO GNP 8.98204
324 1U0J ADP 8.98876
325 5DI3 GNP 9.12547
326 6H5E ANP 9.16335
327 1JI0 ATP 9.16667
328 1VG8 GNP 9.17874
329 4LHW GNP 9.1954
330 1JJV ATP 9.2233
331 4YLG GDP 9.24856
332 3TMK T5A 9.25926
333 4Q1A UDP 9.28571
334 4Q1A 2XZ 9.28571
335 2GK6 ADP 9.30233
336 3VMF GTP 9.30233
337 1VG0 GDP 9.30233
338 5VGR GDP 9.30233
339 3TBK ANP 9.30233
340 2WIC GNP 9.3633
341 1AQU A3P 9.42761
342 4V0K GDP 9.46746
343 1M2O GNP 9.47368
344 2I4I AMP 9.55631
345 2QTV GNP 9.58084
346 2D2F ADP 9.6
347 3A4M ADP 9.61539
348 2XAU ADP 9.63455
349 3CV2 OXL 9.63455
350 2DX7 CIT 9.64912
351 1WA5 GTP 9.65909
352 5OEC GDP 9.83607
353 3B5J 12D 9.87654
354 1SVK ALF GDP 9.89761
355 5KDO GDP 9.89761
356 4PX9 ADP 9.89761
357 4A4Z ANP 9.89761
358 4FRZ ADP 9.89761
359 4PC3 GDP 9.92908
360 5LTJ BEF 9.96678
361 5HR5 ADP 9.96678
362 5LTJ ADP 9.96678
363 1Z08 GNP 10
364 5ZB0 TYD 10.101
365 5ZB0 ADP 10.101
366 3GJ7 GDP 10.2041
367 1NN5 2DT 10.2326
368 1NN5 ANP 10.2326
369 6DEF GCP 10.2389
370 4B47 GDP 10.2389
371 1B7T ADP 10.2564
372 1VG1 GDP 10.2703
373 1VG9 GDP 10.2703
374 4TO8 FLC 10.274
375 1D2N ANP 10.2941
376 3COB ADP 10.299
377 1KK8 BEF ADP 10.3896
378 5UPK GNP 10.4167
379 2OFW ADX 10.5769
380 5DNC ASN 10.5802
381 4X1B MLI 10.5802
382 1R2Q GNP 10.5882
383 5G3Y ADP 10.6195
384 4NTO 1PW 10.628
385 5XDR ADP 10.6312
386 1T8U UAP SGN IDS SGN 10.6618
387 3MJH GTP 10.7143
388 3X1Z GNP 10.7784
389 3W5J GDP 10.7843
390 5Z2M GTP 10.7955
391 1QF9 ALF 10.8247
392 1QF9 ADP 10.8247
393 1QF9 C5P 10.8247
394 5FTB ANP 10.9635
395 5FHD ADP ALF 10.9635
396 1OFH ADP 10.9635
397 3KTA AP5 10.9827
398 4P3Y GDP 10.989
399 4ZI2 GNP 11.0526
400 3DEF GDP 11.0687
401 4GOJ GNP 11.1111
402 1GUA GNP 11.1111
403 3IIJ ADP 11.1111
404 1ZD9 GDP 11.1702
405 2PEZ DAT 11.1732
406 2PEZ GGZ 11.1732
407 3PQC GDP 11.2821
408 1KO8 6PG 11.2957
409 4OI4 ATP 11.2957
410 1UKZ ADP 11.33
411 1F2U ATP 11.4094
412 2ZEJ GDP 11.413
413 1B0U ATP 11.4504
414 2ZR9 DTP 11.4613
415 3FB4 AP5 11.5741
416 3ZIA ATP 11.5942
417 3ZIA ADP 11.5942
418 1DAK ADP 11.6071
419 1DAK DPU 11.6071
420 2VWT PYR 11.6105
421 5H7K GDP 11.6279
422 5LB3 ADP 11.6279
423 5H7J GCP 11.6279
424 5MZN ADP 11.6279
425 5BXQ GDP 11.811
426 2BME GNP 11.828
427 2QN6 GDP 11.828
428 1FQJ GDP 11.9048
429 1FQJ ALF 11.9048
430 2ZPA ADP 11.9454
431 1Z6T ADP 11.9454
432 4PPF FLC 11.9601
433 1W7J ADP BEF 11.9601
434 4MKG AP5 11.9816
435 4NU0 AP5 11.9816
436 1S3G AP5 11.9816
437 4D81 ADP 12.0141
438 2QG6 NMN 12.0603
439 2HT6 GDP 12.069
440 4WZ6 ATP 12.069
441 1XEX ATP 12.2093
442 4JLV ADP 12.2677
443 4RZ3 ADP 12.2867
444 6A20 ADP 12.2924
445 5ZBR ANP 12.2924
446 1IN4 ADP 12.2924
447 4GOX A3P 12.2924
448 2YOH WMJ 12.381
449 2GCO GNP 12.4378
450 2GCN GDP 12.4378
451 3UIE ANP 12.5
452 3H86 AP5 12.5
453 3MWL 8OX 12.5604
454 1D6Z HY1 12.628
455 4NON GDP 12.6923
456 5UQW GDP 12.6984
457 1M7G ADX 12.7962
458 1M7G AV2 12.7962
459 1M7G ADP 12.7962
460 1FP6 ADP 12.8028
461 1G6H ADP 12.8405
462 4XTR ATP 12.9032
463 4XVU ATP 12.9032
464 4XTR ADP 12.9032
465 1OW3 GDP 12.9534
466 2GKS ADP 12.9693
467 5TAR GDP 12.973
468 5TB5 GDP 12.973
469 5HCN GCP 13.0268
470 1KMQ GNP 13.0435
471 4C4P GNP 13.0841
472 3BER AMP 13.253
473 3TKL GTP 13.2653
474 3BFV ADP 13.2841
475 1W5T ANP 13.289
476 1W5T ADP 13.289
477 1NRJ GTP 13.2911
478 6FA4 GNP 13.2948
479 4XOI GTP 13.3333
480 1ZIN AP5 13.3641
481 4WZA ACP 13.4058
482 4WZA ADP 13.4058
483 1VBO MAN MAN MAN 13.4228
484 1VBO MAN 13.4228
485 6C90 ADP 13.4615
486 1YZN GNP 13.5135
487 6BCA GSP 13.5135
488 4D0N GDP 13.5135
489 5HPY GDP 13.5135
490 3LXR GDP 13.5135
491 1Y63 ADP 13.587
492 4BQS K2Q 13.6364
493 4BQS ADP 13.6364
494 5H67 ATP 13.75
495 5BQ5 ADP BEF 13.7566
496 4DID GDP 13.8158
497 2C5L GTP 13.8728
498 2QEN ADP 13.9535
499 2HIM ASP 13.9535
500 2HIM ASN 13.9535
501 4XSH GSP 13.9665
502 3QF7 ANP 14
503 5X40 ACP 14.0411
504 4HI0 GDP 14.0704
505 1TX4 ALF GDP 14.1243
506 5O2T GSP 14.2012
507 2Y65 ADP 14.2857
508 1GXU 2HP 14.2857
509 2D7C GTP 14.2857
510 5E95 GDP 14.2857
511 4ZDJ UTP 14.2857
512 1UJ2 ADP 14.2857
513 1UJ2 C5P 14.2857
514 3MD0 GDP 14.3345
515 3SFV GDP 14.3646
516 3T5G GDP 14.3646
517 1LFD GNP 14.3713
518 6BVI GNP 14.3713
519 6D59 GNP 14.3713
520 6D5E GNP 14.3713
521 6BVM GNP 14.3713
522 6BVK GNP 14.3713
523 6BVL GNP 14.3713
524 6D56 GNP 14.3713
525 6BVJ GNP 14.3713
526 6D5J GNP 14.3713
527 6D5L GNP 14.3713
528 6D5H GNP 14.3713
529 6D5G GNP 14.3713
530 6D55 GNP 14.3713
531 6D5V GNP 14.3713
532 6D5M GNP 14.3713
533 2UZI GTP 14.4231
534 5O74 GDP 14.4444
535 3DDC GNP 14.4578
536 1WQ1 GDP 14.4578
537 3KUD GDP 14.4578
538 1NVV GNP 14.4578
539 1WQ1 AF3 14.4578
540 4D0G GTP 14.4928
541 4LC1 GDP 14.6758
542 5UWH GNP 14.6853
543 5UWO GNP 14.6853
544 5UWP GNP 14.6853
545 6CIT GNP 14.6853
546 5DHF GNP 14.6853
547 5DIF GNP 14.6853
548 5UWI GNP 14.6853
549 5UWJ GNP 14.6853
550 5UWU GNP 14.6853
551 5DI9 GNP 14.6853
552 5MVR ADP 14.8148
553 4LPS GDP 14.876
554 3RC3 ANP 14.9502
555 4HAT GNP 15
556 5WDR GNP 15.2047
557 1F9V ADP 15.2824
558 1XMV ADP 15.2824
559 3TK1 GDP 15.3584
560 3T12 GDP ALF 15.3584
561 3T1O GDP 15.3584
562 4X8O AP5 15.4206
563 1CS4 GSP 15.5556
564 1NF3 GNP 15.625
565 3CPJ GDP 15.6951
566 2PZE ATP 15.7205
567 2X77 GDP 15.873
568 3WYG GTP 15.9341
569 3T34 GDP 15.9468
570 2GJ8 ALF GDP 16.2791
571 5BN3 ADP 16.3823
572 3FYH ADP 16.3823
573 1CXZ GSP 16.4835
574 2G77 GDP 16.6113
575 4H1V GNP 16.6113
576 2G77 AF3 16.6113
577 5J1J ANP 16.8421
578 1GP2 GDP 16.9014
579 6CRK GDP 16.9014
580 1MKY GDP 16.9435
581 3REF GDP 17.0103
582 5TSH ANP 17.0648
583 5TSH ADP 17.0648
584 1YRB GDP 17.1756
585 4KFU ACP 17.4061
586 5WLB GNP 17.6471
587 2OBM ADP 17.7474
588 6BCB GSP 17.8082
589 2RGX AP5 17.9612
590 2CK3 ANP 18
591 2V7Q ATP 18
592 2CK3 ADP 18
593 2V7Q ADP 18
594 2GDJ ANP 18.1818
595 1RYH GNP 18.2266
596 2FJU GSP 18.2724
597 3AB4 THR 18.5393
598 3A1S GDP 18.6047
599 4AG5 ADP 18.6047
600 2A5F GTP 18.6528
601 1Z83 AP5 18.8776
602 2CDN ADP 18.9055
603 3Q85 GNP 18.9349
604 6BC0 GSP 19.3333
605 2OM2 GDP 19.4444
606 2IS6 ADP 19.4539
607 2F5X ASP 19.4539
608 2W83 GTP 19.4805
609 1R4A GNP 19.6078
610 3QBT GNP 20
611 1L2T ATP 20
612 2W2X GSP 20.1613
613 1Z0K GTP 20.2899
614 2XT3 ADP 20.4778
615 3EWA ANP 20.4969
616 4BAS GNP 20.603
617 5EE5 GTP 21.1268
618 5TIV A3P 21.5017
619 1QHG ATP 21.5947
620 2HCJ GDP 21.6216
621 1K6M AGS 21.9269
622 5SZH GNP 22.2222
623 3H4S ADP 22.963
624 2HF9 GSP 23.0089
625 5Z69 AGS 23.2558
626 2HV8 GTP 23.4375
627 5J1S ATP 23.5772
628 4DCT GDP 23.588
629 3GJX GTP 23.6111
630 1EK0 GNP 24.1176
631 3VX3 ADP 24.1935
632 5XKT GNP 24.5
633 1HTW ADP 24.6835
634 3NKV GNP 25.1429
635 1UAD GNP 25.1429
636 1Z0J GTP 25.4237
637 5UWT GNP 26.087
638 5EXT ADP 27.6923
639 1XX6 ADP 27.7487
640 1TU3 GNP 27.8481
641 2A9K GDP 28.3422
642 4YDS ATP 28.5088
643 5UWW GNP 28.5714
644 5UWR GNP 29.6296
645 2KIN ADP 31
646 3BC1 GNP 32.2034
647 4CVN ADP 33.5766
648 5UWQ GNP 36.3636
649 5UWS GNP 36.3636
650 2VOH CIT 38.4615
651 1QHH ATP 40.1198
652 2D7D ADP 47.5
Pocket No.: 2; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found with APoc: 46
This union binding pocket(no: 2) in the query (biounit: 5l3r.bio2) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 2Z5F A3P 2.68456
2 1I0B PEL 2.73038
3 2IL4 COA 2.91262
4 5A96 GTP 3.21285
5 2GMV PEP 3.65448
6 3B6C SDN 3.75427
7 1P4V GLY 4.0678
8 2C3H GLC GLC 4.08163
9 2ZX2 RAM 4.10256
10 1O8B ABF 4.10959
11 1LK7 DER 4.36681
12 1H74 ADP 4.77816
13 2HK9 ATR 5.09091
14 6HKE MLT 5.31561
15 2XCU C5P 5.31561
16 2QQ0 ANP 5.43478
17 1BO4 COA 6.54762
18 4QRH 0O2 6.66667
19 1FQK ALF 6.80272
20 4OEV OXL 7.30897
21 1XXR MAN 7.45342
22 1Q19 SSC 7.97342
23 2YJP CYS 7.97342
24 4DDY DN6 7.98479
25 1FDJ 13P 8.53242
26 2R42 FPS 8.60759
27 43CA NPO 8.84956
28 3N9R TD3 8.87372
29 2O66 FLC 8.88889
30 2ORV 4TA 8.97436
31 2DT9 THR 8.98204
32 5TCI MLI 9.63455
33 1EBG PAH 9.89761
34 1W4R TTP 10.7692
35 3ITJ CIT 11.2628
36 5E5U MLI 12.0603
37 2AL2 2PG 12.2924
38 2AL2 PEP 12.2924
39 4OPC FDA 14.2857
40 1FEC FAD 16.3823
41 4O48 ASP 17.1687
42 2G50 ALA 17.9402
43 1APZ ASP 18.4397
44 1RL4 BRR 19.1489
45 3ZO7 K6H 20.2128
46 3KPE TM3 35.8974
Pocket No.: 3; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found with APoc: 19
This union binding pocket(no: 3) in the query (biounit: 5l3r.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 5LV1 78T 4.28571
2 1WOQ BGC 4.49438
3 5HCF BGC 4.79705
4 2QQ0 ADP 5.43478
5 2QQ0 TMP 5.43478
6 2QQ0 THM 5.43478
7 1CZA G6P 6.14334
8 3EF0 ALF 6.31229
9 1I9Z 2IP 6.64452
10 3VGL BGC 7.78816
11 4JZ8 CIT 8.87372
12 1UKG MMA 9.12698
13 1Q8Q MAN MMA 9.12698
14 1Q8S MAN MMA 9.12698
15 2RIF AMP 9.21986
16 6CS9 PIO 12.1951
17 2WPF FAD 12.2867
18 4UXH T5A 14.6739
19 4J56 FAD 15.7895
Pocket No.: 4; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found with APoc: 8
This union binding pocket(no: 4) in the query (biounit: 5l3r.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 4JBL MET 3.65448
2 2BO4 FLC 4.43686
3 6CI9 F3V 4.6332
4 1ON3 DXX 5.11945
5 3HEE R5P 6.04027
6 3IWK NAD 6.14334
7 1ZGS XMM 10.6312
8 3PAK MAN 17.5676
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