Receptor
PDB id Resolution Class Description Source Keywords
5KVM 2.45 Å NON-ENZYME: SIGNAL_HORMONE EXTRACELLULAR REGION OF MOUSE GPR56/ADGRG1 IN COMPLEX WITH F MONOBODY MUS MUSCULUS ADHESION-GPCR MONOBODY PLL GAIN CELL ADHESION
Ref.: STRUCTURAL BASIS FOR REGULATION OF GPR56/ADGRG1 BY ALTERNATIVELY SPLICED EXTRACELLULAR DOMAINS. NEURON V. 91 1292 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG NAG E:1;
 Invalid;
 none;
 submit data
408.404 n/a O=C(N...
NAG NAG BMA BMA D:1;
 Invalid;
 none;
 submit data
584.572 n/a O=C(N...
NAG A:900;
 Invalid;
 none;
 submit data
221.208 C8 H15 N O6 CC(=O...
THR TYR PHE ALA VAL LEU MET VAL SER B:383;
 Valid;
 Atoms found LESS than expected: % Diff = 0.014;
 submit data
n/a n/a
GOL A:907;
 Invalid;
 none;
 submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5KVM 2.45 Å NON-ENZYME: SIGNAL_HORMONE EXTRACELLULAR REGION OF MOUSE GPR56/ADGRG1 IN COMPLEX WITH F MONOBODY MUS MUSCULUS ADHESION-GPCR MONOBODY PLL GAIN CELL ADHESION
Ref.: STRUCTURAL BASIS FOR REGULATION OF GPR56/ADGRG1 BY ALTERNATIVELY SPLICED EXTRACELLULAR DOMAINS. NEURON V. 91 1292 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 289 families.
1 5KVM - THR TYR PHE ALA VAL LEU MET VAL SER n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 5KVM - THR TYR PHE ALA VAL LEU MET VAL SER n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 5KVM - THR TYR PHE ALA VAL LEU MET VAL SER n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: THR TYR PHE ALA VAL LEU MET VAL SER; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: THR TYR PHE ALA VAL LEU MET VAL SER; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5KVM; Ligand: THR TYR PHE ALA VAL LEU MET VAL SER; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5kvm.bio1) has 32 residues
No: Leader PDB Ligand Sequence Similarity
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