-->
Receptor
PDB id Resolution Class Description Source Keywords
5KUT 1.69 Å EC: 3.6.5.- HMIRO2 C-TERMINAL GTPASE DOMAIN, GDP-BOUND HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG B:602;
A:602;
C:602;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GDP C:601;
A:601;
B:601;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5KUT 1.69 Å EC: 3.6.5.- HMIRO2 C-TERMINAL GTPASE DOMAIN, GDP-BOUND HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5KUT; Ligand: GDP; Similar sites found with APoc: 742
This union binding pocket(no: 1) in the query (biounit: 5kut.bio3) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 5LEF GTP None
2 3A1S GDP None
3 1UPT GTP None
4 2Y8E GNP None
5 1ZIN AP5 None
6 5MVR ADP None
7 1YZQ GNP None
8 1L2T ATP None
9 1JJV ATP None
10 2IL4 COA None
11 2ZFZ ARG None
12 1J99 AND None
13 3FKQ ATP 0.529101
14 1DAR GDP 1.5873
15 2CDN ADP 1.5873
16 4Q1A 2XZ 1.5873
17 4Q1A UDP 1.5873
18 3UIE ANP 1.5873
19 4MKF AP5 1.5873
20 1S3G AP5 1.5873
21 2O0J ADP 1.5873
22 4Z0G 5GP 1.5873
23 1VL0 NAI 1.5873
24 4Z87 5GP 1.5873
25 5GQI CTP 1.5873
26 1Z08 GNP 1.76471
27 1D5C GDP 1.85185
28 3RWO GDP 2.1164
29 3FWY ADP 2.1164
30 4YDS ATP 2.1164
31 2C9O ADP 2.1164
32 2YOH WMJ 2.1164
33 3FB4 AP5 2.1164
34 4XGU ADP 2.1164
35 4FCW ADP 2.1164
36 1XMV ADP 2.1164
37 4LJ9 ACP 2.1164
38 2ZX2 RAM 2.1164
39 3BER AMP 2.1164
40 1N7G NDP 2.1164
41 1QHG ATP 2.1164
42 4ZY1 4U5 2.1164
43 4IXH IMP 2.1164
44 3L6C MLI 2.1164
45 4DKX GDP 2.6455
46 4LC1 GDP 2.6455
47 2XT3 ADP 2.6455
48 5WC2 ADP 2.6455
49 2RGX AP5 2.6455
50 4PFO ADP 2.6455
51 5EXT ADP 2.6455
52 1CR1 TTP 2.6455
53 4NU0 AP5 2.6455
54 3ZFD ANP 2.6455
55 2ZTS ADP 2.6455
56 5VGR GDP 2.6455
57 1G6O ADP 2.6455
58 5I34 GDP 2.6455
59 4ZNL BEF ADP 2.6455
60 4V03 ADP 2.6455
61 3BOS CDP 2.6455
62 3DZD ADP 2.6455
63 1XP8 AGS 2.6455
64 1G3M A3P 2.6455
65 1G3M PCQ 2.6455
66 4O0L NDP 2.6455
67 4WEI GLC GAL 2.6455
68 2CXS F6P 2.6455
69 5EP2 AZU 2.6455
70 1ZUI SKM 2.97619
71 3AB4 THR 3.08789
72 1YRB GDP 3.1746
73 2X77 GDP 3.1746
74 2VVG ADP 3.1746
75 2W58 ADP 3.1746
76 3COB ADP 3.1746
77 3W5J GDP 3.1746
78 5G3Y ADP 3.1746
79 5BN3 ADP 3.1746
80 5UIV ADP 3.1746
81 2OFW ADX 3.1746
82 1E2K TMC 3.1746
83 2NCD ADP 3.1746
84 1X6V ADP 3.1746
85 5AK0 8V1 3.1746
86 1IWE IMP 3.1746
87 3H4S ADP 3.1746
88 1F9V ADP 3.1746
89 4FRZ ADP 3.1746
90 1YTM ATP 3.1746
91 4E03 ADP 3.1746
92 1QF9 C5P 3.1746
93 1QF9 ALF 3.1746
94 1QF9 ADP 3.1746
95 1W5T ADP 3.1746
96 5LTJ ADP 3.1746
97 3DKP ADP 3.1746
98 5LTJ BEF 3.1746
99 1W5T ANP 3.1746
100 1AUA BOG 3.1746
101 5L4L NAP 3.1746
102 3QVV 3QV 3.1746
103 3QVV A3P 3.1746
104 5L4L 7OX 3.1746
105 3MGB PAP 3.1746
106 5MEX PAP 3.1746
107 5MEX SZZ 3.1746
108 5WKC FAD 3.1746
109 1Y63 ADP 3.26087
110 6AIC AMP 3.27103
111 2PEZ GGZ 3.35196
112 2PEZ DAT 3.35196
113 3WY9 GDP 3.7037
114 3WYA GDP 3.7037
115 2XTZ GSP 3.7037
116 2Y65 ADP 3.7037
117 5H7K GDP 3.7037
118 2WIC GNP 3.7037
119 4R98 GNH 3.7037
120 1LVG ADP 3.7037
121 1UJ2 ADP 3.7037
122 1UJ2 C5P 3.7037
123 4HSE ADP 3.7037
124 5G41 AP5 3.7037
125 3B5J 12D 3.7037
126 1H65 GDP 3.7037
127 2ZFI ADP 3.7037
128 4MKG AP5 3.7037
129 5BQ5 ADP BEF 3.7037
130 2BIF ANP 3.7037
131 2BIF SIN 3.7037
132 4OHY ANP 3.7037
133 6B8B ADP 3.7037
134 2GK6 ADP 3.7037
135 1XKV ATP 3.7037
136 4WZ6 ATP 3.7037
137 1VKJ A3P 3.7037
138 2J5V PCA 3.7037
139 1RPN NDP 3.7037
140 5LLB 6YZ 3.7037
141 1K6M AGS 3.7037
142 5ZB0 TYD 3.7037
143 5ZB0 ADP 3.7037
144 2Z5F A3P 3.7037
145 1IOW ADP 3.7037
146 1IOW PHY 3.7037
147 2VHJ ADP 3.7037
148 1NNU NAD 3.7037
149 1NNU TCT 3.7037
150 5TVJ COA 3.7037
151 1NRJ GTP 3.79747
152 1FZQ GDP 3.8674
153 2BEK ATP 3.89105
154 2VB6 ADP BEF 4.02685
155 4ITM ATP 4.12698
156 1BO4 COA 4.16667
157 5FG3 GDP 4.2328
158 4ZKD GDP 4.2328
159 1F6B GDP 4.2328
160 5L3V GDP 4.2328
161 4GOJ GNP 4.2328
162 6CS8 F9Y 4.2328
163 1P72 ADP 4.2328
164 3BFV ADP 4.2328
165 5GVR LMR 4.2328
166 3VX3 ADP 4.2328
167 3DC4 ADP 4.2328
168 2IS6 ADP 4.2328
169 5H68 AGS 4.2328
170 4IHQ ADP 4.2328
171 2D7D ADP 4.2328
172 1OE0 TTP 4.2328
173 1FNN ADP 4.2328
174 1NJF ADP 4.2328
175 5Y6N ADP 4.2328
176 2PL3 ADP 4.2328
177 1NJF AGS 4.2328
178 1U0J ADP 4.2328
179 6H5E ANP 4.2328
180 2ZW5 COA 4.2328
181 2D2F ADP 4.2328
182 3ABI NAD 4.2328
183 5K04 COA 4.2328
184 2O2C G6Q 4.2328
185 1FWV SGA MAG FUC 4.47761
186 2A5F GTP 4.57143
187 1SKQ GDP 4.7619
188 5W76 GDP 4.7619
189 2C78 GNP 4.7619
190 5W75 GDP 4.7619
191 2C77 GNP 4.7619
192 6A20 ADP 4.7619
193 4U00 ADP 4.7619
194 3E70 GDP 4.7619
195 2DPY ADP 4.7619
196 5IRN ADP 4.7619
197 5LB3 ADP 4.7619
198 1AKY AP5 4.7619
199 2QG6 NMN 4.7619
200 5ZBR ANP 4.7619
201 1XX6 ADP 4.7619
202 1G6H ADP 4.7619
203 1D2N ANP 4.7619
204 2FNA ADP 4.7619
205 3TBK ANP 4.7619
206 4IOK ADP 4.7619
207 4IOK XPO 4.7619
208 1U1I NAD 4.7619
209 2WOJ ADP ALF 4.7619
210 4TL6 ANP 4.7619
211 4QRH 0O2 4.7619
212 2ZEJ GDP 4.8913
213 3N5C GDP 4.93827
214 4KOT CE3 4.93827
215 3BD9 A3P 5
216 5WDR GNP 5.26316
217 3U6B GDP 5.29101
218 1MKY GDP 5.29101
219 2J0V GDP 5.29101
220 4J0Q GDP 5.29101
221 2QN6 GDP 5.29101
222 3U6K GDP 5.29101
223 1OW3 GDP 5.29101
224 2HCJ GDP 5.29101
225 5JBQ GDP 5.29101
226 1D8T GDP 5.29101
227 4G5G GDP 5.29101
228 4P3Y GDP 5.29101
229 6G14 G4P 5.29101
230 1BG2 ADP 5.29101
231 4PC3 GDP 5.29101
232 2BVN GNP 5.29101
233 5JCP GDP ALF 5.29101
234 4KFU ACP 5.29101
235 4RD0 GDP 5.29101
236 4LYA ATP 5.29101
237 3TMK T5A 5.29101
238 1FP6 ADP 5.29101
239 5K5Z ANP 5.29101
240 5N69 ADP 5.29101
241 3HU3 AGS 5.29101
242 2HF9 GSP 5.29101
243 1NY5 ADP 5.29101
244 2Q2Y ADP 5.29101
245 2Q2Y MKR 5.29101
246 2OZE AGS 5.29101
247 1Z6T ADP 5.29101
248 2ZR9 DTP 5.29101
249 5IFS ADP 5.29101
250 1G3Q ADP 5.29101
251 1ION ADP 5.29101
252 5X40 ACP 5.29101
253 2ZPA ADP 5.29101
254 4PX9 ADP 5.29101
255 2ZE7 DST 5.29101
256 1VHT BA3 5.29101
257 4R2I ANP 5.29101
258 5I0H ADP BEF 5.29101
259 2GWH A3P 5.29101
260 2ZE7 AMP 5.29101
261 3RC3 ANP 5.29101
262 2GCG NDP 5.29101
263 5IRC GDP 5.37634
264 5HPY GDP 5.40541
265 1KMQ GNP 5.43478
266 3KTA AP5 5.49451
267 1XEX ATP 5.49451
268 4XSH GSP 5.58659
269 4U5X GNP 5.61798
270 1TX4 ALF GDP 5.64972
271 1M7G AV2 5.6872
272 1M7G ADP 5.6872
273 1M7G ADX 5.6872
274 1KO8 6PG 5.71429
275 4WOP CTP 5.77778
276 1M7B GTP 5.82011
277 1SVI GDP 5.82011
278 1GWN GTP 5.82011
279 5DIF GNP 5.82011
280 5UWP GNP 5.82011
281 5UWU GNP 5.82011
282 5UWI GNP 5.82011
283 5UWO GNP 5.82011
284 5UWW GNP 5.82011
285 6CIT GNP 5.82011
286 5DHF GNP 5.82011
287 3M1I GTP 5.82011
288 3WYF GTP 5.82011
289 5UWH GNP 5.82011
290 5UWT GNP 5.82011
291 5UWS GNP 5.82011
292 3TK1 GDP 5.82011
293 1PUJ GNP 5.82011
294 5U32 GDP 5.82011
295 3VMF GTP 5.82011
296 5GOE GDP 5.82011
297 2PZE ATP 5.82011
298 4AG5 ADP 5.82011
299 5H7J GCP 5.82011
300 5TSH ADP 5.82011
301 5ZXD ATP 5.82011
302 5TSH ANP 5.82011
303 2WHX ADP 5.82011
304 1LVK MNT BEF 5.82011
305 2OBM ADP 5.82011
306 5Z69 AGS 5.82011
307 3P4X ADP 5.82011
308 1R6B ADP 5.82011
309 1OS1 PYR 5.82011
310 1OS1 ATP 5.82011
311 5FHD ADP ALF 5.82011
312 5UWJ GNP 5.82011
313 3FVQ ATP 5.82011
314 5DI9 GNP 5.82011
315 4JLV ADP 5.82011
316 1T5C ADP 5.82011
317 3QKT ANP 5.82011
318 2JLR ANP 5.82011
319 5FTB ANP 5.82011
320 6C90 ADP 5.82011
321 3ITJ CIT 5.82011
322 2F3R G5P 5.82011
323 2IXE ATP 5.82011
324 1AQU A3P 5.82011
325 3RJ5 NAD 5.82011
326 5VN0 NAI 5.82011
327 3A4V NAD 5.82011
328 3A4V PYR 5.82011
329 1J49 NAD 5.82011
330 2QQ0 ANP 5.97826
331 2QQ0 THM 5.97826
332 2QQ0 TMP 5.97826
333 2QQ0 ADP 5.97826
334 1CLU DBG 6.0241
335 3WYG GTP 6.04396
336 3T1O GDP 6.06061
337 5E95 GDP 6.34921
338 2C5L GTP 6.34921
339 3KUD GDP 6.34921
340 4XOI GTP 6.34921
341 4P4T GDP 6.34921
342 3CX8 GSP 6.34921
343 2UZI GTP 6.34921
344 1JI0 ATP 6.34921
345 4K81 GTP 6.34921
346 2OG2 MLI 6.34921
347 5IRR GSP 6.34921
348 1RRC ADP 6.34921
349 2CBZ ATP 6.34921
350 2CE7 ADP 6.34921
351 2GMV UN8 6.34921
352 1NHX FTB 6.34921
353 4D81 ADP 6.34921
354 1NHX PEP 6.34921
355 1YQT ADP 6.34921
356 5YV5 ADP 6.34921
357 2GMV PEP 6.34921
358 1B7T ADP 6.34921
359 6B4K ANP 6.34921
360 4PJ3 ANP 6.34921
361 3BFX A3P 6.34921
362 1OYY AGS 6.34921
363 2JJK R15 6.34921
364 2A2C NG1 6.34921
365 2A2C ADP 6.34921
366 4UXU MLK 6.34921
367 3B9Q MLI 6.34921
368 2GJ8 ALF GDP 6.39535
369 1KK8 BEF ADP 6.47482
370 4TTQ ATP 6.51163
371 5BYK OAQ 6.56371
372 5BYK A3P 6.56371
373 3T12 GDP ALF 6.61765
374 1H74 ILE 6.75676
375 1H74 ADP 6.75676
376 4ZI2 GNP 6.76692
377 1WQ1 GDP 6.87831
378 3MD0 GDP 6.87831
379 1JJ7 ADP 6.87831
380 3DEF GDP 6.87831
381 1LFD GNP 6.87831
382 3T34 GDP 6.87831
383 4X8O AP5 6.87831
384 1W7J ADP BEF 6.87831
385 4ZG4 VO4 ADP 6.87831
386 3LRE ADP 6.87831
387 1UKZ ADP 6.87831
388 2AWN ADP 6.87831
389 2B8W ALF 5GP 6.87831
390 1IN4 ADP 6.87831
391 5L3R GCP 6.87831
392 6DEF GCP 6.87831
393 1WQ1 AF3 6.87831
394 5MZN ADP 6.87831
395 4ZDJ UTP 6.87831
396 5NM7 GLY 6.87831
397 3V2U ATP 6.87831
398 1X8J A3P 6.87831
399 1BZL FAD 6.87831
400 2W68 SIA GAL BGC 6.87831
401 4B47 GDP 6.88705
402 4KVG GTP 7.14286
403 3T5G GDP 7.18232
404 4HDO GNP 7.18563
405 1GUA GNP 7.18563
406 4HDQ GNP 7.18563
407 1KAO GDP 7.18563
408 3X1Z GNP 7.18563
409 1F2U ATP 7.38255
410 4LPS GDP 7.40741
411 3CNL GNP 7.40741
412 4PPF FLC 7.40741
413 4H1V GNP 7.40741
414 4XVU ATP 7.40741
415 4XTR ADP 7.40741
416 4XTR ATP 7.40741
417 4R43 GDP 7.40741
418 1F5N GNP 7.40741
419 1Z83 AP5 7.40741
420 2XAU ADP 7.40741
421 4YS0 ADP 7.40741
422 2JAQ DCP 7.40741
423 5TIV A3P 7.40741
424 5J1J ANP 7.40741
425 1NST A3P 7.40741
426 3RLF ANP 7.40741
427 4E5N NAD 7.40741
428 2O66 FLC 7.40741
429 4NON GDP 7.69231
430 1GXU 2HP 7.69231
431 2RCN GDP 7.93651
432 3GJ4 GDP 7.93651
433 4DCT GDP 7.93651
434 5BXQ GDP 7.93651
435 5W7Q GDP 7.93651
436 1WA5 GTP 7.93651
437 3GJ3 GDP 7.93651
438 3GJ0 GDP 7.93651
439 4HAT GNP 7.93651
440 3CH5 GDP 7.93651
441 5EE5 GTP 7.93651
442 1WDT GTP 7.93651
443 1IBR GNP 7.93651
444 1R0X ATP 7.93651
445 2FAH GDP 7.93651
446 3KJI ADP 7.93651
447 3B7G ANP 7.93651
448 3QXC ATP 7.93651
449 4OI4 ATP 7.93651
450 5J1S ATP 7.93651
451 4TMK T5A 7.93651
452 2ZPT A3P 7.93651
453 1Q20 PLO 7.93651
454 1Q20 A3P 7.93651
455 2VZZ SCA 7.93651
456 2R42 FPS 7.93651
457 3CPJ GDP 8.46561
458 1KK1 GNP 8.46561
459 1SQ5 ADP 8.46561
460 1M2O GNP 8.46561
461 3EWA ANP 8.46561
462 3NHB ADP 8.46561
463 5XDR ADP 8.46561
464 2FSH ANP 8.46561
465 2ZE3 AKG 8.46561
466 3CV2 OXL 8.46561
467 5AHO TLA 8.46561
468 4REP FAD 8.46561
469 1R4A GNP 8.48485
470 2B8T THM 8.52018
471 4UXH T5A 8.69565
472 1EK0 GNP 8.82353
473 3IIJ ADP 8.88889
474 1RE0 GDP 8.99471
475 1S9D GDP 8.99471
476 3WXM GTP 8.99471
477 3AB3 GDP 8.99471
478 1ZCB GDP 8.99471
479 2XTN GTP 8.99471
480 3GJX GTP 8.99471
481 3FYH ADP 8.99471
482 1P9B GDP 8.99471
483 2GDJ ANP 8.99471
484 1T8U UAP SGN IDS SGN 8.99471
485 1T8U A3P 8.99471
486 4A4Z ANP 8.99471
487 1ZEM NAD 8.99471
488 2VWT PYR 8.99471
489 5OEC GDP 9.28962
490 5CK5 GDP 9.52381
491 1GOJ ADP 9.52381
492 1D2E GDP 9.52381
493 4KVA GTP 9.52381
494 1DAK ADP 9.52381
495 1DAK DPU 9.52381
496 4GOX A3P 9.52381
497 4QOS ADP 9.52381
498 5VHC BEF ADP 9.52381
499 4GBM A3P 9.52381
500 1Q19 SSC 9.52381
501 1ZRH A3P 9.52381
502 2VHW NAI 9.52381
503 4Z7X 3CX 9.52381
504 2QEN ADP 10.0529
505 5L3W GDP 10.0529
506 3IO3 ADP 10.0529
507 4RZ3 ADP 10.0529
508 1OFH ADP 10.0529
509 5M7P ADP 10.0529
510 5L3S GNP 10.0529
511 4IEE AGS 10.0529
512 5E5U MLI 10.0529
513 3HB5 NAP 10.0529
514 4KBF AMP 10.0529
515 3IUY AMP 10.0529
516 1A27 NAP 10.0529
517 5L3S G 10.0529
518 4KAX GTP 10.0592
519 1J2J GTP 10.241
520 1O3Y GTP 10.241
521 2J59 GTP 10.241
522 2W83 GTP 10.303
523 4LHW GNP 10.3448
524 3QBT GNP 10.3448
525 3TNF GNP 10.3448
526 1TQ4 GDP 10.582
527 1CS4 GSP 10.582
528 3ZIA ADP 10.582
529 3ZIA ATP 10.582
530 2GKS ADP 10.582
531 2ZJ5 ADP 10.582
532 2ODE ALF GDP 10.6383
533 3PQC GDP 11.1111
534 3EC1 GDP 11.1111
535 1RJ9 GCP 11.1111
536 2IYL GDP 11.1111
537 3ZQ6 ADP ALF 11.1111
538 4UZI IMD 11.1111
539 2BME GNP 11.2903
540 6BVK GNP 11.6402
541 6D56 GNP 11.6402
542 6D5G GNP 11.6402
543 6BVJ GNP 11.6402
544 6D5H GNP 11.6402
545 6BVL GNP 11.6402
546 6BVI GNP 11.6402
547 6D5E GNP 11.6402
548 6D59 GNP 11.6402
549 6D5J GNP 11.6402
550 6D5V GNP 11.6402
551 1G7C 5GP 11.6402
552 4NE2 SH2 11.6402
553 4NE2 ADP 11.6402
554 4WZA ACP 11.6402
555 4WZA ADP 11.6402
556 1NVV GNP 11.6402
557 6BVM GNP 11.6402
558 6D5L GNP 11.6402
559 6D55 GNP 11.6402
560 6D5M GNP 11.6402
561 3PCR GTP 11.6402
562 1NN5 ANP 11.6402
563 1NN5 2DT 11.6402
564 2CHG ANP 11.6402
565 5WRJ A3P 11.6402
566 5WRI A3P 11.6402
567 2I4I AMP 11.6402
568 3AQ4 GDP 11.9565
569 2FH5 GTP 12.1693
570 3Q9L ATP 12.1693
571 2ORV 4TA 12.1693
572 1WMA NDP 12.1693
573 1WMA AB3 12.1693
574 4YMU ATP 12.6984
575 1SVK ALF GDP 12.7479
576 3GJ8 GDP 13.0435
577 3N39 FMN 13.0719
578 1OXV ANP 13.2275
579 3EZ2 ADP 13.2275
580 4YJ1 ADP 13.2275
581 4YLG GDP 13.2948
582 2QZ4 ADP 13.7566
583 1V8K ANP 13.7566
584 1SVM ATP 13.7566
585 1Z0K GTP 13.9535
586 4QM7 GTP 14.0351
587 3DDC GNP 14.1104
588 4CVN ADP 14.2857
589 5YT0 GDP 14.8148
590 6AU6 GDP 14.8148
591 1W4R TTP 14.8148
592 4BQS ADP 15.3409
593 4BQS K2Q 15.3409
594 1G41 ADP 15.873
595 3QF7 ANP 15.873
596 2WJG GDP 15.9574
597 1OFU GDP 15.9664
598 1G7S GDP 16.4021
599 4NCN GTP 16.4021
600 4TMZ GSP 16.4021
601 5HR5 ADP 16.4021
602 1B0U ATP 16.4021
603 1IHU AF3 16.4021
604 1IHU ADP 16.4021
605 6FAA ADP 16.4021
606 4HI0 GDP 17.9894
607 1TAD ALF 17.9894
608 1TAD GDP 17.9894
609 2WJH GDP 18.0723
610 2WJH FLC 18.0723
611 5UWQ GNP 18.1818
612 5XKT GNP 18.5
613 5UWR GNP 18.5185
614 4BAS GNP 18.5185
615 1YZG GDP 18.9944
616 5H67 ATP 19.0476
617 3H86 AP5 19.5767
618 5H4S RAM 19.5767
619 1HTW ADP 19.6203
620 2X7I CIT 20.1058
621 3GJ7 GDP 20.4082
622 2KIN ADP 21
623 4BFW ZVW 21.164
624 2V7Q ATP 21.6931
625 3A4M ADP 21.6931
626 2V7Q ADP 21.6931
627 2CK3 ANP 21.6931
628 1W0J ADP 21.6931
629 1W0J ADP BEF 21.6931
630 2CK3 ADP 21.6931
631 2EFE GNH 22.0994
632 1YVD GNP 23.0769
633 1WF3 GNP 23.2804
634 1GOT GDP 23.2804
635 2FFQ GSP 23.3918
636 1Z0J GTP 23.5294
637 6CRK GDP 23.8095
638 2OM2 GDP 23.8095
639 2G77 GDP 23.8095
640 1GP2 GDP 23.8095
641 1BH2 GSP 23.8095
642 1Y3A GDP 23.8095
643 5KDO GDP 23.8095
644 2G77 AF3 23.8095
645 2GCO GNP 24.3386
646 2GCN GDP 24.3386
647 1FQJ GDP 24.3386
648 1FQK GDP 24.3386
649 4D0N GDP 24.8649
650 6BC0 GSP 24.8649
651 3LXR GDP 24.8649
652 6BCB GSP 24.8649
653 6BCA GSP 24.8649
654 2NGR GDP 24.8677
655 1NF3 GNP 24.8677
656 1GRN GDP 24.8677
657 1A4R GNH 24.8677
658 1A4R GDP 24.8677
659 4ITR GDP 24.8677
660 4DID GDP 24.8705
661 2WMO GTP 25.2632
662 1CXZ GSP 25.2747
663 1DS6 GDP 25.3968
664 1RYH GNP 25.3968
665 1QF5 RPL 25.3968
666 1QF5 GDP 25.3968
667 3RAB GNP 25.4438
668 4V0K GDP 25.4438
669 3MJH GTP 25.5952
670 1I4D GDP 25.9259
671 1E96 GTP 25.9259
672 1VG0 GDP 25.9259
673 1VG8 GNP 25.9259
674 2W2X GSP 25.9459
675 1ZD9 GDP 26.0638
676 1ZJ6 G3D 26.2032
677 1TU3 GNP 26.3158
678 3ZS9 ADP ALF 26.3158
679 1R2Q GNP 26.4706
680 1MH1 GNP 26.8817
681 3DOE GTP 26.9841
682 3REF GDP 26.9841
683 1G4U GDP 27.1739
684 2WKQ GTP 27.5132
685 2BCG GDP 27.5132
686 2FJU GSP 27.5281
687 3SBD GNP 27.8075
688 1HE1 GDP 27.8409
689 2CJW GDP 28.0423
690 1OIV GDP 28.0423
691 2A5J GDP 28.0423
692 1Z06 GNP 28.5714
693 1OIX GDP 28.7958
694 3Q85 GNP 28.9941
695 3E5H GNP 29.2135
696 1KSH GDP 29.5699
697 1Z0F GDP 29.6089
698 5JCZ GDP 29.6089
699 3BC1 GNP 29.6296
700 5OCG GNP 29.6296
701 4YC7 GNP 29.8343
702 4LX0 BEF GDP 29.9435
703 2A9K GDP 29.9465
704 5TB5 GDP 30.2703
705 5TAR GDP 30.2703
706 1ZC3 GNP 30.2857
707 2EW1 GNP 30.3483
708 1Z0A GDP 30.4598
709 4C4P GNP 30.6358
710 2HV8 GTP 30.814
711 1UAD GNP 30.8571
712 2D7C GTP 31.1377
713 3TKL GTP 31.2169
714 5DI3 GNP 31.2169
715 4M9Q GNP 31.2169
716 4D0G GTP 31.4286
717 1U8Z GDP 31.5476
718 2HT6 GDP 31.6092
719 6FA4 GNP 31.7919
720 1YZN GNP 31.8919
721 1X1R GDP 32.0225
722 5SZH GNP 32.2751
723 3GJ5 GDP 32.3529
724 3SFV GDP 32.5967
725 5O2T GSP 33.1361
726 1MR3 G3D 33.1492
727 2F9L GDP 33.3333
728 5WLB GNP 33.7349
729 1VG9 GDP 34.0541
730 1VG1 GDP 34.0541
731 1S8F GDP 34.4633
732 1Z2A GDP 34.5238
733 3NKV GNP 34.8571
734 1KY3 GDP 35.1648
735 5Z2M GTP 35.4497
736 3Q72 GNP 35.5422
737 1G16 GDP 37.0588
738 5UPK GNP 37.2973
739 5O74 GDP 37.7778
740 6BSX GDP 39.3258
741 6BSX E7S 39.3258
742 5XC5 GTP 40.9091
Pocket No.: 2; Query (leader) PDB : 5KUT; Ligand: GDP; Similar sites found with APoc: 15
This union binding pocket(no: 2) in the query (biounit: 5kut.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1E7S NAP 2.6455
2 2R75 01G 3.1746
3 2WOX NDP 3.1746
4 1V35 NAI 3.7037
5 1S7N COA 4.94506
6 5A96 GTP 5.29101
7 4DDY DN6 5.29101
8 1PVN MZP 5.29101
9 2RHO GSP 6.34921
10 4OOE FOM 6.34921
11 4OOE NDP 6.34921
12 1GPJ CIT 7.40741
13 4HUT ATP 8.46561
14 2BMZ XLM 12.0567
15 3T6E UQ9 12.1693
Pocket No.: 3; Query (leader) PDB : 5KUT; Ligand: GDP; Similar sites found with APoc: 40
This union binding pocket(no: 3) in the query (biounit: 5kut.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 3GEG NAD None
2 5I7A 68Q 2.1164
3 1KEV NDP 2.6455
4 2VAP GDP 3.1746
5 3ZL8 ADP 3.1746
6 4QYS PLR 3.1746
7 3SXN COA 3.1746
8 1QHH ATP 3.5503
9 5TVJ 7LF 3.7037
10 1ELU PDA 3.7037
11 5FVJ ACO 3.7037
12 4DPL NAP 4.2328
13 1V0C ACO 4.2328
14 1V0C KNC 4.2328
15 3B1M KRC 4.2328
16 2VBQ BSJ 4.24242
17 3R96 AMP 4.25532
18 3R96 ACO 4.25532
19 5YGE ACO 4.5977
20 4AVB ACO 4.7619
21 6G96 ACO 5.11364
22 4GID 0GH 5.29101
23 2V2V V12 5.29101
24 3BAZ NAP 5.29101
25 6BII NAP 5.82011
26 1LOR BMP 5.82011
27 3WR7 COA 5.88235
28 4QDI ATP 6.34921
29 4KVX ACO 6.41026
30 5J5R 6G1 6.87831
31 5J5R IMP 6.87831
32 1GHE ACO 7.34463
33 4UTG ANP 7.93651
34 5AOV NAP 8.99471
35 5UY8 8UM 9.52381
36 5UY8 AMZ 9.52381
37 6EDV COA 9.52381
38 1Q19 APC 9.52381
39 2DBZ NAP 10.582
40 2JEV NHQ 12.069
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