-->
Receptor
PDB id Resolution Class Description Source Keywords
5KSP 2.16 Å EC: 3.6.5.- HMIRO1 C-DOMAIN GDP COMPLEX C2221 CRYSTAL FORM HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:701;
B:701;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
CL A:702;
B:702;
Invalid;
Invalid;
none;
none;
submit data
35.453 Cl [Cl-]
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5KSP 2.16 Å EC: 3.6.5.- HMIRO1 C-DOMAIN GDP COMPLEX C2221 CRYSTAL FORM HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5KSP; Ligand: GDP; Similar sites found with APoc: 694
This union binding pocket(no: 1) in the query (biounit: 5ksp.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 3IIJ ADP None
2 4WOP CTP None
3 1NN5 ANP None
4 1NN5 2DT None
5 1HTW ADP None
6 5ZB0 ADP None
7 5ZB0 TYD None
8 2BEK ATP None
9 2ZTS ADP None
10 4FCW ADP None
11 5TIV A3P None
12 4RZ3 ADP None
13 4LJ9 ACP None
14 2VWT PYR None
15 4UXU MLK None
16 1JBW ACQ None
17 2VBQ BSJ None
18 1SVK ALF GDP 1.05263
19 1TAD GDP 1.05263
20 1TAD ALF 1.05263
21 2OM2 GDP 1.05263
22 1BH2 GSP 1.05263
23 1Y3A GDP 1.05263
24 2IXE ATP 1.05263
25 3Q9L ATP 1.05263
26 3NHB ADP 1.05263
27 2O0J ADP 1.05263
28 5U32 GDP 1.57895
29 5XKT GNP 1.57895
30 1K6M AGS 1.57895
31 3W5J GDP 1.57895
32 5J1J ANP 1.57895
33 4WEI GLC GAL 1.57895
34 1F9V ADP 1.57895
35 2HF9 GSP 1.57895
36 4FRZ ADP 1.57895
37 5GVR LMR 1.57895
38 2J5V PCA 1.57895
39 1ZD9 GDP 1.59574
40 1S8F GDP 1.69492
41 4BQS ADP 1.70455
42 4BQS K2Q 1.70455
43 1Z0J GTP 1.76471
44 1YVD GNP 1.77515
45 1U8Z GDP 1.78571
46 1J2J GTP 1.80723
47 1O3Y GTP 1.80723
48 4B47 GDP 2.10526
49 3ZS9 ADP ALF 2.10526
50 2WOJ ADP ALF 2.10526
51 3BOS CDP 2.10526
52 3ZFD ANP 2.10526
53 4MKG AP5 2.10526
54 1ZIN AP5 2.10526
55 6A20 ADP 2.10526
56 3BFX A3P 2.10526
57 4TMK T5A 2.10526
58 5ZBR ANP 2.10526
59 3RSJ NGA GAL SIA 2.10526
60 4IOK ADP 2.10526
61 4IOK XPO 2.10526
62 2OBM ADP 2.10526
63 2VOS ADP 2.10526
64 4E5N NAD 2.10526
65 1GXU 2HP 2.1978
66 3DKP ADP 2.44898
67 2C78 GNP 2.63158
68 2C77 GNP 2.63158
69 2BVN GNP 2.63158
70 4J0Q GDP 2.63158
71 1RE0 GDP 2.63158
72 3T1O GDP 2.63158
73 3T12 GDP ALF 2.63158
74 2QG6 NMN 2.63158
75 2GMV UN8 2.63158
76 1NHX FTB 2.63158
77 1D2N ANP 2.63158
78 1NHX PEP 2.63158
79 2ZE7 DST 2.63158
80 2GMV PEP 2.63158
81 3VX3 ADP 2.63158
82 1QF9 C5P 2.63158
83 1QF9 ADP 2.63158
84 1QF9 ALF 2.63158
85 1Z83 AP5 2.63158
86 4XGU ADP 2.63158
87 2GWH A3P 2.63158
88 4PJ3 ANP 2.63158
89 3TBK ANP 2.63158
90 6C90 ADP 2.63158
91 2ZE7 AMP 2.63158
92 4XFR CIT 2.63158
93 4KBF AMP 2.63158
94 1VHT BA3 2.75229
95 4QM7 GTP 2.92398
96 4ZKD GDP 3.15789
97 5GOE GDP 3.15789
98 1DAR GDP 3.15789
99 3COB ADP 3.15789
100 3FWY ADP 3.15789
101 5H7J GCP 3.15789
102 3FKQ ATP 3.15789
103 3B5J 12D 3.15789
104 2QZ4 ADP 3.15789
105 2Y65 ADP 3.15789
106 4GBM A3P 3.15789
107 2VVG ADP 3.15789
108 4D81 ADP 3.15789
109 1XMV ADP 3.15789
110 4YDS ATP 3.15789
111 2XT3 ADP 3.15789
112 3EWA ANP 3.15789
113 1G3Q ADP 3.15789
114 3BFV ADP 3.15789
115 1XP8 AGS 3.15789
116 1AKY AP5 3.15789
117 5LLB 6YZ 3.15789
118 1ION ADP 3.15789
119 3B7G ANP 3.15789
120 1W4R TTP 3.15789
121 2Z5F A3P 3.15789
122 1AUA BOG 3.15789
123 1Q20 A3P 3.15789
124 1Q20 PLO 3.15789
125 2ORV 4TA 3.15789
126 2VHJ ADP 3.15789
127 1OYY AGS 3.15789
128 1QXA GLY GLY GLY 3.15789
129 4U5X GNP 3.37079
130 1B0U ATP 3.43511
131 1TQ4 GDP 3.68421
132 1S9D GDP 3.68421
133 2W58 ADP 3.68421
134 3TMK T5A 3.68421
135 1IHU ADP 3.68421
136 1IHU AF3 3.68421
137 5G3Y ADP 3.68421
138 1LVK MNT BEF 3.68421
139 3E70 GDP 3.68421
140 2RGX AP5 3.68421
141 2D2F ADP 3.68421
142 4OHY ANP 3.68421
143 5WRI A3P 3.68421
144 5WRJ A3P 3.68421
145 1E2K TMC 3.68421
146 1G6O ADP 3.68421
147 1JJ7 ADP 3.68421
148 4IHQ ADP 3.68421
149 4PX9 ADP 3.68421
150 4ZDJ UTP 3.68421
151 3BER AMP 3.68421
152 1Q3Q ANP 3.68421
153 2X77 GDP 3.7037
154 1NRJ GTP 3.79747
155 2QQ0 THM 3.80435
156 2QQ0 ANP 3.80435
157 2QQ0 ADP 3.80435
158 2QQ0 TMP 3.80435
159 4UXH T5A 3.80435
160 1MR3 G3D 3.8674
161 2KIN ADP 4
162 1FQK GDP 4.08163
163 1FQJ GDP 4.08163
164 1FQJ ALF 4.08163
165 2A9K GDP 4.21053
166 5W76 GDP 4.21053
167 5CK5 GDP 4.21053
168 4XTR ATP 4.21053
169 4XVU ATP 4.21053
170 4XTR ADP 4.21053
171 1YTM ATP 4.21053
172 2CDN ADP 4.21053
173 3ZQ6 ADP ALF 4.21053
174 1QF5 RPL 4.21053
175 1QF5 GDP 4.21053
176 4E03 ADP 4.21053
177 1P72 ADP 4.21053
178 2ZR9 DTP 4.21053
179 3H86 AP5 4.21053
180 6B8B ADP 4.21053
181 1XPJ TLA 4.21053
182 5NM7 GLY 4.21053
183 6FAA ADP 4.21053
184 2JAQ DCP 4.21053
185 1U0J ADP 4.21053
186 2HK5 1BM 4.21053
187 1J99 AND 4.21053
188 2IYL GDP 4.22535
189 5BQ5 ADP BEF 4.2328
190 1Y63 ADP 4.34783
191 3P4X ADP 4.35835
192 1KO8 6PG 4.57143
193 1D2E GDP 4.73684
194 1M2O GNP 4.73684
195 1ZCB GDP 4.73684
196 3MD0 GDP 4.73684
197 3AB3 GDP 4.73684
198 1GOT GDP 4.73684
199 1GP2 GDP 4.73684
200 5KDO GDP 4.73684
201 1DAK ADP 4.73684
202 1DAK DPU 4.73684
203 5L3V GDP 4.73684
204 5L3R GCP 4.73684
205 5G41 AP5 4.73684
206 5TSH ADP 4.73684
207 2FAH GDP 4.73684
208 5N69 ADP 4.73684
209 5TSH ANP 4.73684
210 5IRN ADP 4.73684
211 1NJF AGS 4.73684
212 5LB3 ADP 4.73684
213 1NJF ADP 4.73684
214 5M7P ADP 4.73684
215 5VGR GDP 4.73684
216 3FB4 AP5 4.73684
217 5H68 AGS 4.73684
218 2OG2 MLI 4.73684
219 5Y6N ADP 4.73684
220 5X40 ACP 4.73684
221 3B9Q MLI 4.73684
222 4YMU ATP 4.73684
223 3QVV 3QV 4.73684
224 3QVV A3P 4.73684
225 5H4S RAM 4.73684
226 5MZN ADP 4.73684
227 4DPL NAP 4.73684
228 4A4Z ANP 4.73684
229 3ZL8 ADP 4.73684
230 3L6C MLI 4.73684
231 3MKH FAD 4.73684
232 5K5Z ANP 5.09554
233 4QRH 0O2 5.2381
234 3U6B GDP 5.26316
235 3WYA GDP 5.26316
236 3WY9 GDP 5.26316
237 2HCJ GDP 5.26316
238 2QN6 GDP 5.26316
239 5JBQ GDP 5.26316
240 4G5G GDP 5.26316
241 4RD0 GDP 5.26316
242 1D8T GDP 5.26316
243 3U6K GDP 5.26316
244 2RCN GDP 5.26316
245 3EC1 GDP 5.26316
246 4R98 GNH 5.26316
247 2OFW ADX 5.26316
248 1FP6 ADP 5.26316
249 2C9O ADP 5.26316
250 4R43 GDP 5.26316
251 2CHG ANP 5.26316
252 1IN4 ADP 5.26316
253 5I34 GDP 5.26316
254 5ZXD ATP 5.26316
255 4OI4 ATP 5.26316
256 5HR5 ADP 5.26316
257 4R2I ANP 5.26316
258 2Q2Y ADP 5.26316
259 2Q2Y MKR 5.26316
260 1R0X ATP 5.26316
261 1T8U UAP SGN IDS SGN 5.26316
262 3KJI ADP 5.26316
263 2DPY ADP 5.26316
264 4AG5 ADP 5.26316
265 1G6H ADP 5.26316
266 5MEX PAP 5.26316
267 5MEX SZZ 5.26316
268 1X8J A3P 5.26316
269 2B8T THM 5.26316
270 1T8U A3P 5.26316
271 5K04 COA 5.26316
272 1ZJ6 G3D 5.34759
273 4KVG GTP 5.35714
274 1ZUI SKM 5.35714
275 3X1Z GNP 5.38922
276 4HDO GNP 5.38922
277 4HDQ GNP 5.38922
278 2PEZ GGZ 5.58659
279 2PEZ DAT 5.58659
280 4NON GDP 5.78947
281 1VG8 GNP 5.78947
282 2J59 GTP 5.78947
283 3VMF GTP 5.78947
284 3WXM GTP 5.78947
285 1KK1 GNP 5.78947
286 6CRK GDP 5.78947
287 3IO3 ADP 5.78947
288 1G7C 5GP 5.78947
289 2FNA ADP 5.78947
290 4HSE ADP 5.78947
291 2WHX ADP 5.78947
292 3A4M ADP 5.78947
293 2GKS ADP 5.78947
294 2BIF SIN 5.78947
295 2BIF ANP 5.78947
296 4NU0 AP5 5.78947
297 1T5C ADP 5.78947
298 2IS6 ADP 5.78947
299 5IFS ADP 5.78947
300 1OXV ANP 5.78947
301 1JJV ATP 5.78947
302 3DC4 ADP 5.78947
303 3QKT ANP 5.78947
304 5BYK A3P 5.78947
305 5BYK OAQ 5.78947
306 1YQT ADP 5.78947
307 5YV5 ADP 5.78947
308 1XX6 ADP 5.78947
309 2FSH ANP 5.78947
310 3ITJ CIT 5.78947
311 3SXN COA 5.78947
312 1EK0 GNP 5.88235
313 3H4S ADP 5.92593
314 1VG1 GDP 5.94595
315 1YZG GDP 6.14525
316 5MVR ADP 6.17284
317 5Z2M GTP 6.25
318 3F8K COA 6.25
319 6G14 G4P 6.31579
320 1G7S GDP 6.31579
321 5L3S GNP 6.31579
322 1RJ9 GCP 6.31579
323 4Q1A UDP 6.31579
324 4Q1A 2XZ 6.31579
325 5IRR GSP 6.31579
326 3QXC ATP 6.31579
327 1IWE IMP 6.31579
328 5L3W GDP 6.31579
329 3DZD ADP 6.31579
330 5WC2 ADP 6.31579
331 1BG2 ADP 6.31579
332 1F5N GNP 6.31579
333 2B8W ALF 5GP 6.31579
334 2CBZ ATP 6.31579
335 2GDJ ANP 6.31579
336 1R6B ADP 6.31579
337 3FYH ADP 6.31579
338 4TL6 ANP 6.31579
339 5LTJ ADP 6.31579
340 4TTQ ATP 6.31579
341 2JLR ANP 6.31579
342 4YJ1 ADP 6.31579
343 5L3S G 6.31579
344 5LTJ BEF 6.31579
345 1H74 ILE 6.31579
346 1UPT GTP 6.43275
347 1R4A GNP 6.66667
348 2Y8E GNP 6.70391
349 1OFU GDP 6.72269
350 3E5H GNP 6.74157
351 6AU6 GDP 6.84211
352 3TK1 GDP 6.84211
353 2QEN ADP 6.84211
354 2XTN GTP 6.84211
355 4PFO ADP 6.84211
356 4BFW ZVW 6.84211
357 4GOX A3P 6.84211
358 5EXT ADP 6.84211
359 1G41 ADP 6.84211
360 2OZE AGS 6.84211
361 4PPF FLC 6.84211
362 2GJ8 ALF GDP 6.97674
363 1MKY GDP 7.36842
364 3CNL GNP 7.36842
365 3CX8 GSP 7.36842
366 4ZNL BEF ADP 7.36842
367 1W7J ADP BEF 7.36842
368 1RRC ADP 7.36842
369 2ZFI ADP 7.36842
370 1S3G AP5 7.36842
371 4WZ6 ATP 7.36842
372 5J1S ATP 7.36842
373 2PZE ATP 7.36842
374 4V03 ADP 7.36842
375 2ZPA ADP 7.36842
376 3EZ2 ADP 7.36842
377 6H5E ANP 7.36842
378 4IEE AGS 7.36842
379 2HCR AMP 7.36842
380 1F2U ATP 7.38255
381 1GUA GNP 7.40741
382 2WJG GDP 7.44681
383 1VG0 GDP 7.89474
384 1VG9 GDP 7.89474
385 3GJ7 GDP 7.89474
386 3GJ8 GDP 7.89474
387 3GJ4 GDP 7.89474
388 5AK0 8V1 7.89474
389 2YOH WMJ 7.89474
390 4X8O AP5 7.89474
391 1X6V ADP 7.89474
392 1P9B GDP 7.89474
393 3RLF ANP 7.89474
394 1JI0 ATP 7.89474
395 4YS0 ADP 7.89474
396 2AWN ADP 7.89474
397 1NST A3P 7.89474
398 5GZZ GSH 7.89474
399 1AQU A3P 7.89474
400 1W5F G2P 7.89474
401 5EE5 GTP 7.98122
402 3QF7 ANP 8
403 3KTA AP5 8.09249
404 3M1I GTP 8.42105
405 3WYF GTP 8.42105
406 1SQ5 ADP 8.42105
407 4HI0 GDP 8.42105
408 4BAS GNP 8.42105
409 4NE2 ADP 8.42105
410 4NE2 SH2 8.42105
411 2NCD ADP 8.42105
412 4LYA ATP 8.42105
413 2CE7 ADP 8.42105
414 5FTB ANP 8.42105
415 5FHD ADP ALF 8.42105
416 5I0H ADP BEF 8.42105
417 1XKV ATP 8.42105
418 1L2T ATP 8.42105
419 2WJH GDP 8.43373
420 2WJH FLC 8.43373
421 2WIC GNP 8.61423
422 3WYG GTP 8.79121
423 1G16 GDP 8.82353
424 1ZC3 GNP 8.84956
425 3RAB GNP 8.87574
426 4P4T GDP 8.94737
427 4PC3 GDP 8.94737
428 2ODE ALF GDP 8.94737
429 1CS4 GSP 8.94737
430 1H65 GDP 8.94737
431 3DEF GDP 8.94737
432 1LVG ADP 8.94737
433 1WDT GTP 8.94737
434 4QOS ADP 8.94737
435 6DEF GCP 8.94737
436 3BD9 A3P 8.94737
437 1P7T PYR 8.94737
438 2VB6 ADP BEF 9.39597
439 1SKQ GDP 9.47368
440 1PUJ GNP 9.47368
441 3T34 GDP 9.47368
442 3UIE ANP 9.47368
443 3HU3 AGS 9.47368
444 1W5T ANP 9.47368
445 1W5T ADP 9.47368
446 4JLV ADP 9.47368
447 3ZIA ATP 9.52381
448 3ZIA ADP 9.52381
449 1B7T ADP 9.61539
450 1XEX ATP 9.88372
451 4NCN GTP 10
452 4HAT GNP 10
453 4LC1 GDP 10
454 5BXQ GDP 10
455 3GJ3 GDP 10
456 4H1V GNP 10
457 3GJ0 GDP 10
458 3CH5 GDP 10
459 4TMZ GSP 10
460 4WZA ADP 10
461 4WZA ACP 10
462 1NY5 ADP 10
463 1OS1 ATP 10
464 1OS1 PYR 10
465 1OE0 TTP 10
466 1IBR GNP 10
467 4KAX GTP 10.0592
468 2FH5 GTP 10.2703
469 3LRE ADP 10.4225
470 1Z0K GTP 10.4651
471 5UPK GNP 10.5263
472 3BC1 GNP 10.5263
473 5BN3 ADP 10.5263
474 3FVQ ATP 10.5263
475 2PL3 ADP 10.5263
476 1F6B GDP 10.6061
477 5H67 ATP 10.6383
478 1KK8 BEF ADP 10.7914
479 1SVM ATP 11.0526
480 2ZPT A3P 11.0526
481 4U00 ADP 11.0526
482 5XDR ADP 11.0526
483 5WQP NCA 11.0526
484 3PCR GTP 11.1111
485 5W7Q GDP 11.5789
486 5DIF GNP 11.5789
487 5UWU GNP 11.5789
488 5UWJ GNP 11.5789
489 5UWP GNP 11.5789
490 5UWI GNP 11.5789
491 5UWQ GNP 11.5789
492 5UWW GNP 11.5789
493 5UWO GNP 11.5789
494 5UWR GNP 11.5789
495 6CIT GNP 11.5789
496 5UWT GNP 11.5789
497 5DHF GNP 11.5789
498 5UWH GNP 11.5789
499 5UWS GNP 11.5789
500 5UIV ADP 11.5789
501 1M7G ADX 11.5789
502 1M7G ADP 11.5789
503 1M7G AV2 11.5789
504 6CS8 F9Y 11.5789
505 3GJX GTP 11.5789
506 5DI9 GNP 11.5789
507 4CLI 5P8 11.5789
508 1Z08 GNP 11.7647
509 1KAO GDP 11.976
510 5H7K GDP 12.1053
511 4KVA GTP 12.1053
512 1CR1 TTP 12.1053
513 1V8K ANP 12.1053
514 3RC3 ANP 12.1053
515 4YLG GDP 12.1387
516 4DKX GDP 12.6316
517 2XTZ GSP 12.6316
518 1UJ2 ADP 12.6316
519 1UJ2 C5P 12.6316
520 5Z69 AGS 12.6316
521 5VHC BEF ADP 12.6316
522 6B4K ANP 12.6316
523 6AIC AMP 12.6316
524 1OFH ADP 12.6437
525 1UKZ ADP 12.8079
526 5LEF GTP 13.1579
527 1KSH GDP 13.1579
528 5YT0 GDP 13.1579
529 4KFU ACP 13.1579
530 1TU3 GNP 13.4503
531 1R2Q GNP 13.5294
532 3AQ4 GDP 13.587
533 5W75 GDP 13.6842
534 5FG3 GDP 13.6842
535 4ZG4 VO4 ADP 13.6842
536 3MJH GTP 13.6905
537 1YZQ GNP 14.1176
538 1UAD GNP 14.1414
539 1FNN ADP 14.2105
540 4D0G GTP 14.2857
541 2XAU ADP 14.7368
542 3MGB PAP 14.7368
543 4DCT GDP 15.2632
544 1W0J ADP 15.2632
545 2CK3 ANP 15.2632
546 1Z6T ADP 15.2632
547 2CK3 ADP 15.2632
548 1W0J ADP BEF 15.2632
549 2D7D ADP 15.2632
550 4CVN ADP 15.3285
551 3SFV GDP 15.4696
552 3TKL GTP 15.7895
553 5SZH GNP 15.7895
554 1Z0F GDP 16.2011
555 1G3M A3P 16.3158
556 1G3M PCQ 16.3158
557 4LPS GDP 16.8421
558 1ZRH A3P 16.8421
559 1QSM ACO 17.1053
560 3NKV GNP 17.1429
561 3GJ5 GDP 17.6471
562 1D5C GDP 17.9012
563 1X1R GDP 17.9775
564 1YZN GNP 18.3784
565 1Z0A GDP 18.3908
566 4P3Y GDP 18.6813
567 3A1S GDP 18.9474
568 5JCP GDP ALF 18.9474
569 1YRB GDP 19.4737
570 2EFE GNH 20.442
571 3T5G GDP 20.9945
572 2A5F GTP 21.1429
573 6BSX GDP 21.3483
574 6BSX E7S 21.3483
575 4MKF AP5 21.659
576 2W83 GTP 21.8182
577 4LHW GNP 22.4138
578 3QBT GNP 22.4138
579 3TNF GNP 22.4138
580 2A5J GDP 22.6316
581 3N5C GDP 22.8395
582 3REF GDP 23.1579
583 2GK6 ADP 23.1579
584 2EW1 GNP 23.3831
585 2V7Q ATP 23.6842
586 2V7Q ADP 23.6842
587 3RWO GDP 24.3243
588 2NGR GDP 24.7368
589 1NF3 GNP 24.7368
590 2WMO GTP 24.7368
591 1A4R GDP 24.7368
592 1A4R GNH 24.7368
593 4DID GDP 24.7368
594 1GRN GDP 24.7368
595 4ITR GDP 24.7368
596 5O74 GDP 25
597 2FFQ GSP 25.731
598 2J0V GDP 25.7895
599 1WA5 GTP 25.7895
600 4YC7 GNP 25.9669
601 1E96 GTP 26.8421
602 1I4D GDP 26.8421
603 1GWN GTP 27.3684
604 2W2X GSP 27.3684
605 1OW3 GDP 27.3684
606 1DS6 GDP 27.3684
607 4M9Q GNP 27.3684
608 5DI3 GNP 27.3684
609 1GOJ ADP 27.3684
610 1MH1 GNP 27.4194
611 5IRC GDP 27.4194
612 3LXR GDP 27.5676
613 5HPY GDP 27.5676
614 6BCB GSP 27.5676
615 6BCA GSP 27.5676
616 6BC0 GSP 27.5676
617 4D0N GDP 27.5676
618 1KMQ GNP 27.7174
619 1G4U GDP 27.7174
620 3SBD GNP 27.8075
621 2GCN GDP 27.8947
622 2GCO GNP 27.8947
623 2ZEJ GDP 27.8947
624 2BCG GDP 27.8947
625 1CXZ GSP 28.022
626 1M7B GTP 28.2609
627 4XOI GTP 28.3333
628 4V0K GDP 28.4024
629 2WKQ GTP 28.4211
630 1RYH GNP 28.4211
631 1VKJ A3P 28.4211
632 4XSH GSP 28.4916
633 2FJU GSP 28.6517
634 1TX4 ALF GDP 28.8136
635 1HE1 GDP 28.9773
636 5TB5 GDP 29.7297
637 5TAR GDP 29.7297
638 5OCG GNP 30
639 3PQC GDP 30
640 4ZI2 GNP 30
641 1WF3 GNP 30
642 4GOJ GNP 30.1587
643 3Q85 GNP 30.7692
644 1KY3 GDP 30.7692
645 2G77 GDP 31.0526
646 2F9L GDP 31.0526
647 3CPJ GDP 31.0526
648 5OEC GDP 31.1475
649 2BME GNP 31.1828
650 6FA4 GNP 31.2139
651 1FZQ GDP 31.4917
652 1Z2A GDP 31.5476
653 2CJW GDP 31.5789
654 1SVI GDP 32.1053
655 3Q72 GNP 32.5301
656 5O2T GSP 32.5444
657 5WLB GNP 33.1325
658 1OIV GDP 33.1579
659 1OIX GDP 33.1579
660 1Z06 GNP 34.7368
661 2HT6 GDP 35.0575
662 5JCZ GDP 35.1955
663 5XC5 GTP 35.2273
664 4LX0 BEF GDP 35.5932
665 2C5L GTP 36.4162
666 4C4P GNP 36.4162
667 2HV8 GTP 36.6279
668 4K81 GTP 36.8421
669 2D7C GTP 37.1257
670 5E95 GDP 37.5
671 6D5G GNP 37.7246
672 1LFD GNP 37.7246
673 6D5V GNP 37.7246
674 6D56 GNP 37.7246
675 6D5H GNP 37.7246
676 6BVK GNP 37.7246
677 6D5E GNP 37.7246
678 6BVJ GNP 37.7246
679 6BVL GNP 37.7246
680 6D55 GNP 37.7246
681 6D5J GNP 37.7246
682 6BVI GNP 37.7246
683 6D59 GNP 37.7246
684 6BVM GNP 37.7246
685 6D5L GNP 37.7246
686 6D5M GNP 37.7246
687 1CLU DBG 37.9518
688 2UZI GTP 37.9518
689 3KUD GDP 37.9518
690 3DDC GNP 37.9518
691 1WQ1 GDP 37.9518
692 1NVV GNP 37.9518
693 5WDR GNP 39.7661
694 3DOE GTP 40.1042
Pocket No.: 2; Query (leader) PDB : 5KSP; Ligand: GDP; Similar sites found with APoc: 9
This union binding pocket(no: 2) in the query (biounit: 5ksp.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3GUZ PAF None
2 4B16 NAG 1.57895
3 5TVJ COA 5.26316
4 3BZ3 YAM 6.31579
5 1NML CIT 6.31579
6 3IUY AMP 7.89474
7 2AG5 NAD 10
8 1BO4 COA 11.9048
9 2F3R G5P 15.7895
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