-->
Receptor
PDB id Resolution Class Description Source Keywords
5KOR 2.2 Å EC: 2.4.1.69 ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1 (FUT1) IN COMPLEX AND A XYLO-OLIGOSSACHARIDE ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE COMPLEX XLLG TRANSFERASE
Ref.: STRUCTURE OF ARABIDOPSIS THALIANA FUT1 REVEALS A VA THE GT-B CLASS FOLD AND PROVIDES INSIGHT INTO XYLOG FUCOSYLATION. PLANT CELL V. 28 2352 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GAL XYS XYS BGC BGC BGC XYS GAL BGC B:607;
C:607;
Valid;
Valid;
none;
none;
submit data
1387.21 n/a O(CC1...
CL B:613;
C:617;
D:605;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
35.453 Cl [Cl-]
EDO A:604;
C:613;
B:611;
D:603;
D:602;
C:612;
A:603;
D:604;
C:616;
B:612;
A:602;
C:611;
C:614;
C:615;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
GDP D:601;
A:601;
B:601;
C:601;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5KOR 2.2 Å EC: 2.4.1.69 ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1 (FUT1) IN COMPLEX AND A XYLO-OLIGOSSACHARIDE ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE COMPLEX XLLG TRANSFERASE
Ref.: STRUCTURE OF ARABIDOPSIS THALIANA FUT1 REVEALS A VA THE GT-B CLASS FOLD AND PROVIDES INSIGHT INTO XYLOG FUCOSYLATION. PLANT CELL V. 28 2352 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5KOR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5KOR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5KOR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GAL XYS XYS BGC BGC BGC XYS GAL BGC; Similar ligands found: 98
No: Ligand ECFP6 Tc MDL keys Tc
1 GLC BGC BGC XYS BGC XYS XYS GAL 1 1
2 GAL XYS XYS BGC BGC BGC XYS GAL BGC 1 1
3 BGC BGC XYS BGC GAL XYS BGC XYS GAL 1 1
4 GAL BGC BGC BGC XYS XYS 1 1
5 GLC BGC BGC XYS BGC XYS XYS GAL GAL 1 1
6 GAL BGC BGC BGC XYS BGC XYS 0.949367 1
7 BGC BGC BGC XYS BGC XYS GAL 0.949367 1
8 BGC BGC BGC XYS GAL 0.860759 1
9 BGC BGC XYS BGC XYS GAL 0.855422 0.972222
10 BGC BGC BGC XYS BGC XYS XYS 0.848101 1
11 GLC BGC BGC XYS BGC XYS XYS 0.848101 1
12 BGC BGC XYS BGC XYS BGC XYS 0.848101 1
13 XYS BGC BGC BGC BGC XYS BGC BGC BGC 0.814815 1
14 XYS BGC BGC XYS BGC XYS BGC BGC BGC 0.814815 1
15 BGC BGC BGC XYS BGC BGC 0.814815 1
16 BGC BGC XYS BGC 0.765432 1
17 GAL BGC BGC XYS 0.7625 1
18 NBG BGC BGC XYS BGC XYS XYS 0.621053 0.744681
19 BMA BMA GLA BMA BMA 0.593023 0.942857
20 GLC GLC GLC BGC 0.581395 0.942857
21 GLO BGC BGC XYS BGC XYS XYS 0.518868 0.972222
22 GLC BGC BGC BGC BGC 0.518519 0.942857
23 CT3 0.518519 0.942857
24 BGC BGC BGC 0.518519 0.942857
25 BGC GLC GLC GLC 0.518519 0.942857
26 MTT 0.518519 0.942857
27 BGC BGC BGC BGC BGC BGC 0.518519 0.942857
28 BGC BGC GLC 0.518519 0.942857
29 MAN BMA BMA BMA BMA BMA 0.518519 0.942857
30 MAN MAN BMA BMA BMA BMA 0.518519 0.942857
31 BGC GLC GLC 0.518519 0.942857
32 CEY 0.518519 0.942857
33 BMA MAN BMA 0.518519 0.942857
34 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.518519 0.942857
35 B4G 0.518519 0.942857
36 GLC BGC BGC 0.518519 0.942857
37 MT7 0.518519 0.942857
38 BGC BGC BGC BGC BGC 0.518519 0.942857
39 GLA GAL BGC 0.518519 0.942857
40 CTT 0.518519 0.942857
41 BMA BMA BMA BMA BMA BMA 0.518519 0.942857
42 BMA BMA BMA BMA BMA 0.518519 0.942857
43 GLC GLC BGC 0.518519 0.942857
44 GLA GAL GLC 0.518519 0.942857
45 CE6 0.518519 0.942857
46 MAN BMA BMA 0.518519 0.942857
47 CEX 0.518519 0.942857
48 GLC GLC GLC GLC GLC 0.518519 0.942857
49 DXI 0.518519 0.942857
50 GLC BGC GLC 0.518519 0.942857
51 BGC GLC GLC GLC GLC 0.518519 0.942857
52 CE8 0.518519 0.942857
53 CE5 0.518519 0.942857
54 BGC BGC BGC BGC 0.518519 0.942857
55 GAL GAL GAL 0.518519 0.942857
56 BGC GLC GLC GLC GLC GLC GLC 0.518519 0.942857
57 GLC GAL GAL 0.518519 0.942857
58 BMA BMA BMA 0.518519 0.942857
59 BGC BGC BGC GLC 0.518519 0.942857
60 CTR 0.518519 0.942857
61 MAN BMA BMA BMA BMA 0.518519 0.942857
62 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.518519 0.942857
63 GLC BGC BGC BGC 0.518519 0.942857
64 MLR 0.518519 0.942857
65 GLC BGC BGC BGC BGC BGC 0.518519 0.942857
66 GLA GAL 0.506329 0.942857
67 CBI 0.506329 0.942857
68 N9S 0.506329 0.942857
69 LAT 0.506329 0.942857
70 CBK 0.506329 0.942857
71 MAB 0.506329 0.942857
72 BGC BMA 0.506329 0.942857
73 GLC GAL 0.506329 0.942857
74 B2G 0.506329 0.942857
75 GAL BGC 0.506329 0.942857
76 GLA GLA 0.506329 0.942857
77 BMA GAL 0.506329 0.942857
78 BGC GAL 0.506329 0.942857
79 MAL 0.506329 0.942857
80 LBT 0.506329 0.942857
81 BMA BMA 0.46988 0.916667
82 BGC BGC 0.46988 0.916667
83 BGC BGC BGC BGC BGC BGC BGC BGC 0.466667 0.942857
84 XYT 0.460674 0.733333
85 GLA GAL GAL 0.454545 0.942857
86 ABD 0.436893 0.717391
87 BMA MAN MAN MAN MAN 0.418367 0.942857
88 MAN MAN MAN MAN MAN MAN MAN 0.413462 0.942857
89 MAN BMA MAN 0.413043 0.942857
90 8B7 0.410526 0.916667
91 FUC GAL GLC 0.410526 0.916667
92 LAT FUC 0.410526 0.916667
93 GLC GLC XYP 0.410526 0.942857
94 GLC GAL FUC 0.410526 0.916667
95 BGC GAL FUC 0.410526 0.916667
96 MAN MAN MAN BMA MAN 0.405941 0.942857
97 LAT GLA 0.404762 0.942857
98 G2F BGC BGC BGC BGC BGC 0.404255 0.825
Ligand no: 2; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5KOR; Ligand: GDP; Similar sites found with APoc: 190
This union binding pocket(no: 1) in the query (biounit: 5kor.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 5MT9 SRO None
2 5ET3 60C None
3 3NB0 G6P 1.34357
4 4MRP GSH 1.34357
5 5N9X THR 1.34357
6 4H9T HL4 1.51515
7 3W54 RNB 1.51976
8 5IUY BOG 1.54525
9 4Q0A GLY HIS LYS ILE LEU HIS ARG LEU LEU GLN 1.65563
10 3SQP 3J8 1.67364
11 5T67 SAH 1.68269
12 5T67 JHZ 1.68269
13 5AE2 FYC 1.72745
14 5AE2 FAD 1.72745
15 3B9Z CO2 1.80412
16 4WBD CIT 1.84843
17 4V3I ASP LEU THR ARG PRO 1.94553
18 5IJJ I6P 2.08333
19 1Q7E MET 2.1028
20 5AWV GHP 3MY 3FG GHP GHP OMY 3FG NAG MAN 2.11132
21 5DXE EST 2.29885
22 5WGD EST 2.29885
23 5WGQ EST 2.29885
24 3HYW DCQ 2.30326
25 5HYR EST 2.32558
26 2W90 6PG 2.33546
27 2GWH PCI 2.34899
28 4MGA 27L 2.35294
29 4MG9 27K 2.35294
30 4MGD 27N 2.35294
31 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 2.38095
32 5AAV GW5 2.38095
33 2BJ4 OHT 2.38095
34 4TV1 36M 2.39044
35 3UUD EST 2.39044
36 1PVN MZP 2.39362
37 2DT9 THR 2.39521
38 2QE4 JJ3 2.41935
39 1TKU 5RP 2.45098
40 5HVJ ANP 2.53968
41 3O01 DXC 2.5974
42 1C3X 8IG 2.63158
43 4RW3 TDA 2.64901
44 4URN NOV 2.66667
45 1GNI OLA 2.68714
46 5ZI9 FLC 2.69231
47 2UXR ICT 2.73632
48 4IYO NAK 2.77078
49 6DIO CIT 2.7972
50 4NV0 MG7 2.82132
51 1R6N 434 2.8436
52 3TDC 0EU 2.87908
53 3CYQ AMU 2.89855
54 2BCG GER 2.91262
55 5X3R 7Y3 2.92683
56 4ORM ORO 2.99252
57 4ORM 2V6 2.99252
58 4ORM FMN 2.99252
59 4QVX 3CQ 2.99401
60 2WG9 OCA 3.07692
61 5V4R MGT 3.08642
62 5AO7 NAG 3.09524
63 2AX9 BHM 3.125
64 3ZLR X0B 3.16456
65 4IAE 1DX 3.1746
66 3HQ9 OXL 3.18841
67 1FX8 BOG 3.20285
68 5N26 CPT 3.2967
69 3RG9 WRA 3.33333
70 3RG9 NDP 3.33333
71 2HHP FLC 3.45489
72 6GL8 F3Q 3.48837
73 2PZE ATP 3.49345
74 4G86 BNT 3.52113
75 5UXH GFB 3.54223
76 5TO8 7FM 3.5461
77 6GSG RCO 3.65535
78 2D24 XYS XYS 3.66972
79 5KXQ GDP 3.67232
80 1ZED PNP 3.71901
81 4DE3 DN8 3.80228
82 2B99 RDL 3.84615
83 1M2Z BOG 3.89105
84 4OIV XX9 3.9823
85 2AK3 AMP 3.9823
86 3AQT RCO 4.08163
87 1IZC PYR 4.12979
88 4WZ6 ATP 4.13793
89 4K7O EKZ 4.16667
90 2W3L DRO 4.16667
91 3F3E LEU 4.23892
92 5W7B MYR 4.25532
93 4UCC ZKW 4.29185
94 4F06 PHB 4.31267
95 1DTL BEP 4.34783
96 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 4.34783
97 4WGF HX2 4.39024
98 6CB2 OLC 4.43686
99 6FQZ 6PG 4.48718
100 5K52 OCD 4.5283
101 5K53 STE 4.58015
102 1XX4 BAM 4.5977
103 2GN2 C5P 4.67836
104 1YOK P6L 4.6875
105 1TV5 N8E 4.74041
106 5X30 HCS 4.77387
107 3E70 GDP 4.87805
108 1X0P FAD 4.8951
109 4ZGM 32M 4.91803
110 1OYF MHN 4.95868
111 5ECP MET 4.9904
112 5ECP JAA 4.9904
113 5ECP ATP 4.9904
114 4XQC NAD 5.05263
115 5NC1 NAG 5.06329
116 5ZXD ATP 5.31136
117 5UC1 486 5.40541
118 6BR9 PGV 5.57103
119 6BR9 6OU 5.57103
120 5LXT GTP 5.59441
121 4BHL ARG 5.61798
122 1M5B BN1 5.70342
123 4V1F BQ1 5.81395
124 2FZH DH1 5.82524
125 1RV1 IMZ 5.88235
126 2G36 TRP 5.88235
127 2WOR 2AN 6
128 2VBQ BSJ 6.06061
129 3ZY6 GFB 6.07735
130 4WMY 3S6 6.20915
131 1NF8 BOG 6.28019
132 3X01 AMP 6.36132
133 4RYV ZEA 6.45161
134 5TVI O8N 6.52174
135 4TR1 GSH 6.52174
136 3SIX GDP 6.66667
137 5FOE GDP 6.71785
138 2FT0 ACO 6.80851
139 5UGW GSH 6.85714
140 5LUB 3Y7 6.87023
141 4O4Z N2O 7.14286
142 3O5N BR0 7.14286
143 4R57 ACO 7.38636
144 2CNT COA 7.5
145 2AWN ADP 7.61155
146 2JFZ DGL 7.84314
147 2JFZ 003 7.84314
148 2P4Y C03 7.94224
149 3KP6 SAL 7.94702
150 2BHW NEX 8.18966
151 6BR8 PGV 8.33333
152 2I0G I0G 8.56031
153 1FO0 ILE ASN PHE ASP PHE ASN THR ILE 8.62069
154 1HBK COA 8.98876
155 5NM7 GLY 9.02256
156 3W5N RAM 9.59693
157 6GN6 MAL 9.8434
158 2QZT PLM 9.90991
159 3N7S 3N7 10.4167
160 4GFD 0YB 10.7317
161 1TO9 HMH 11.1538
162 3KIF GDL 11.3208
163 1UO5 PIH 11.7647
164 1UO4 PIH 11.7647
165 4RF7 ARG 11.9002
166 6BJO DUY 12
167 6BJ3 ILE PRO LEU THR GLU GLU ALA GLU LEU 12.1212
168 3QKD HI0 12.1547
169 5XS3 VAL ARG SER ARG ARG CYS LEU ARG LEU 12.2449
170 5KY9 GDP 12.5
171 5KY3 GFB 12.5
172 2XRH NIO 13
173 2Q4G CIT 13.1783
174 2CBZ ATP 13.5021
175 5LX9 OLB 13.7324
176 4F4S EFO 14.4737
177 4OGQ 7PH 14.7059
178 5C9J DAO 14.9466
179 5KY5 GDP 15
180 2E2R 2OH 15.1639
181 4YSX E23 15.3846
182 6GMN F4E 15.4639
183 4JMU 1ML 16.0714
184 5KY4 GDP 17.5
185 1SR7 MOF 18.5328
186 5NNT DPV 24.3243
187 5Z84 CHD 28.5714
188 5LWY OLB 32.7731
189 4RJD TFP 33.3333
190 3OKI OKI 35.7143
Pocket No.: 2; Query (leader) PDB : 5KOR; Ligand: GDP; Similar sites found with APoc: 59
This union binding pocket(no: 2) in the query (biounit: 5kor.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 5M8T 0TR 1.34529
2 5GWE GWM 1.48148
3 4OKD GLC GLC GLC 1.53551
4 5LGA 6VH 1.66667
5 1GJW GLC 1.72745
6 2UW1 GVM 2.07101
7 4C3Y ANB 2.11132
8 3B6C SDN 2.13675
9 3P9T TCL 2.28311
10 2Y88 2ER 2.45902
11 3ZQE DXC 2.62295
12 4RW3 PLM 2.64901
13 5CDH TLA 2.67857
14 1JJ7 ADP 2.69231
15 1GPM AMP 3.26296
16 2HAW 2PN 3.55987
17 4QO5 NAG 4.03071
18 5OVV ACE ILE GLU SER THR GLU ILE 4.06504
19 6BMM OLB 4.09556
20 5NXX 3Q7 4.47761
21 5Y02 MXN 4.6729
22 5Y02 HBX 4.6729
23 3KLL MAL 4.79846
24 2O1V ADP 4.9904
25 2JHP GUN 4.9904
26 3FAL REA 5.3719
27 4BG4 ARG 5.61798
28 2OWZ CIT 5.72289
29 4HBM 0Y7 5.83333
30 2VWA PTY 5.94059
31 1V6A TRE 6.3253
32 1O5Q PYR 6.55738
33 5MBX SP5 6.84105
34 5MBX FAD 6.84105
35 5C8W PCG 6.99301
36 5C1M OLC 7.2
37 4PPF FLC 7.71429
38 6BR8 6OU 8.33333
39 3FWN 6PG 8.95833
40 1HBK MYR 8.98876
41 4OHB 5HM 9.47368
42 1Z82 G3P 9.55224
43 1Z82 G3H 9.55224
44 5UC9 MYR 10.177
45 3RMK BML 10.8434
46 2VOH CIT 11.465
47 5OCA 9QZ 11.9816
48 5WL1 D3D 12.1212
49 5WL1 CUY 12.1212
50 5X13 HC4 13.2979
51 1KJ1 MAN 13.7615
52 3E85 BSU 14.557
53 2QQD AG2 15.0943
54 1N13 AG2 15.3846
55 1GEG GLC 16.4062
56 1XVB 3BR 16.4706
57 4CCO OGA 20
58 2Y69 CHD 20
59 5ZCO CHD 28.5714
Pocket No.: 3; Query (leader) PDB : 5KOR; Ligand: GAL XYS XYS BGC BGC BGC XYS GAL BGC; Similar sites found with APoc: 8
This union binding pocket(no: 3) in the query (biounit: 5kor.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 2F6D ACR 2.03252
2 1B09 PC 2.91262
3 4TVD BGC 3.26296
4 6GR0 F8W 4.02299
5 4OWK NGA 4.34783
6 4OJP MAL 6.33397
7 3GDN MXN 9.02111
8 4G5H UD7 9.91736
Pocket No.: 4; Query (leader) PDB : 5KOR; Ligand: GDP; Similar sites found with APoc: 10
This union binding pocket(no: 4) in the query (biounit: 5kor.bio2) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 2H1H AFH 1.53551
2 4K10 NI9 2.20994
3 1G6H ADP 2.72374
4 4RFM 3P6 3.00752
5 3AI3 SOE 3.42205
6 2VHW NAI 3.71353
7 4NTO 1PW 4.34783
8 1T0S BML 5.81395
9 1RVV INI 6.49351
10 2BHW XAT 8.18966
Pocket No.: 5; Query (leader) PDB : 5KOR; Ligand: GDP; Similar sites found with APoc: 14
This union binding pocket(no: 5) in the query (biounit: 5kor.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 6DND PLP 1.94647
2 5XHA FRU 2.11132
3 1H16 PYR 2.30326
4 5T63 ALA ALA ALA ALA 2.99728
5 4XH0 ADP 3.47395
6 4L9Z OXL 3.83481
7 2W58 ADP 3.9604
8 4WZA ADP 4.40252
9 4WZA ACP 4.40252
10 3IT6 ORN 4.87805
11 1L0I PSR 5.12821
12 1D8C GLV 5.37428
13 2YLN CYS 6.71378
14 2OFE NAG 8.4507
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