Receptor
PDB id Resolution Class Description Source Keywords
5JY6 2 Å EC: 1.2.1.12 STRUCTURES OF STREPTOCOCCUS AGALACTIAE GBS GAPDH IN DIFFEREN ENZYMATIC STATES STREPTOCOCCUS AGALACTIAE ROSSMANN FOLD NAD GAPDH OXIDOREDUCTASE GLYCOLYSIS
Ref.: CRYSTAL STRUCTURES OF GROUP B STREPTOCOCCUS GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: APO-FORM, AND TERNARY COMPLEXES. PLOS ONE V. 11 65917 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAD D:401;
C:401;
B:401;
A:401;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
MG A:402;
D:402;
B:402;
C:402;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5JY6 2 Å EC: 1.2.1.12 STRUCTURES OF STREPTOCOCCUS AGALACTIAE GBS GAPDH IN DIFFEREN ENZYMATIC STATES STREPTOCOCCUS AGALACTIAE ROSSMANN FOLD NAD GAPDH OXIDOREDUCTASE GLYCOLYSIS
Ref.: CRYSTAL STRUCTURES OF GROUP B STREPTOCOCCUS GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: APO-FORM, AND TERNARY COMPLEXES. PLOS ONE V. 11 65917 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 16 families.
1 5JYE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 5JY6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 4QX6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (25)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1HDG - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 5JYE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 5JY6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 4QX6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 1DSS - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 3L4S - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 3LVF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
8 3LC1 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
9 3K73 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
10 3KSD - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
11 3HQ4 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
12 3K9Q - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
13 3KV3 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
14 5LD5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
15 3B20 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
16 1U8F - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
17 4O63 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
18 1DBV - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
19 3DBV - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
20 1NPT - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
21 1GD1 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
22 1NQ5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
23 2B4R - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
24 1RM3 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
25 1GAE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (53)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1CER - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1HDG - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 5JYE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 5JY6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 4QX6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 3V1Y - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 5C7O - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
8 3H9E - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
9 3PFW - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
10 1SZJ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
11 1DSS - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
12 2D2I - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
13 3L4S - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
14 3LVF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
15 3LC1 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
16 3K73 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
17 3KSD - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
18 3HQ4 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
19 3K9Q - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
20 3KV3 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
21 1K3T ic50 = 64 uM BRZ C19 H22 O4 CC(C)(C=C)....
22 1ML3 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
23 5LD5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
24 3B20 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
25 4O59 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
26 1J0X Kd = 0.01 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
27 1ZNQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
28 1U8F - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
29 4WNI - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
30 4WNC - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
31 4O63 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
32 4Z0H - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
33 2DBV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
34 4DBV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
35 1DBV - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
36 3DBV - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
37 1NQA - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
38 3CMC - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
39 1NQO - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
40 1NPT - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
41 1GD1 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
42 1NQ5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
43 2B4R - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
44 2B4T - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
45 2PKR - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
46 1RM3 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
47 1RM5 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
48 1RM4 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
49 3CIF - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50 1VSV - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
51 1GAD - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
52 1DC6 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
53 1GAE - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAD; Similar ligands found: 220
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NAD IBO 0.845455 0.933333
3 NHD 0.821429 0.972222
4 NAP 0.811966 0.986111
5 NAJ PYZ 0.803419 0.910256
6 NFD 0.791304 0.946667
7 NXX 0.765766 0.972603
8 DND 0.765766 0.972603
9 ZID 0.737705 0.986111
10 NAQ 0.729508 0.934211
11 NAE 0.721311 0.959459
12 NA0 0.712 0.972603
13 TAP 0.704 0.921053
14 AMP NAD 0.696 0.945946
15 NDE 0.689922 0.972603
16 NAJ 0.683333 0.972222
17 NDC 0.679389 0.934211
18 NDO 0.674603 0.958904
19 N01 0.656 0.972222
20 CNA 0.642276 0.972603
21 NBP 0.621212 0.922078
22 NAD BBN 0.609929 0.876543
23 8ID 0.609756 0.922078
24 NAD CJ3 0.601399 0.845238
25 ADP MG 0.579439 0.918919
26 A2D 0.576923 0.958333
27 ADP 0.575472 0.931507
28 NGD 0.574803 0.922078
29 BEF ADP 0.574074 0.894737
30 ADP BEF 0.574074 0.894737
31 BA3 0.566038 0.958333
32 NAD NDT 0.565789 0.755319
33 M33 0.564815 0.918919
34 ADP PO3 0.563636 0.957747
35 B4P 0.560748 0.958333
36 AP5 0.560748 0.958333
37 ATP MG 0.558559 0.918919
38 AN2 0.555556 0.918919
39 GAP 0.553571 0.932432
40 OOB 0.551724 0.972222
41 CA0 0.550459 0.932432
42 ATP 0.545455 0.931507
43 ACP 0.545455 0.906667
44 NAD TDB 0.544872 0.70297
45 ADP ALF 0.54386 0.883117
46 ALF ADP 0.54386 0.883117
47 5FA 0.540541 0.931507
48 AQP 0.540541 0.931507
49 APR 0.540541 0.931507
50 AR6 0.540541 0.931507
51 ANP MG 0.53913 0.907895
52 VO4 ADP 0.53913 0.945205
53 ADP VO4 0.53913 0.945205
54 AGS 0.535714 0.883117
55 SAP 0.535714 0.883117
56 AD9 0.535714 0.906667
57 WAQ 0.533333 0.896104
58 ABM 0.53271 0.905405
59 00A 0.529412 0.921053
60 DLL 0.529412 0.972222
61 ANP 0.526316 0.906667
62 NJP 0.526316 0.959459
63 ACQ 0.526316 0.906667
64 OAD 0.525 0.932432
65 AMP MG 0.523364 0.905405
66 ADX 0.522523 0.839506
67 5AL 0.521739 0.945205
68 A1R 0.521008 0.871795
69 9SN 0.520325 0.909091
70 AMP 0.518868 0.930556
71 A 0.518868 0.930556
72 50T 0.517857 0.893333
73 ATF 0.517241 0.894737
74 DAL AMP 0.516949 0.945205
75 3OD 0.516393 0.932432
76 1ZZ 0.516393 0.851852
77 SON 0.513514 0.92
78 PRX 0.513274 0.881579
79 SRP 0.512821 0.92
80 ADP BMA 0.512397 0.932432
81 3UK 0.512397 0.958904
82 MYR AMP 0.512195 0.851852
83 NAJ PZO 0.510949 0.909091
84 NMN 0.509434 0.875
85 AMP DBH 0.507937 0.906667
86 A22 0.504202 0.945205
87 FA5 0.504 0.945946
88 ATP A A A 0.504 0.971831
89 TYR AMP 0.5 0.945946
90 8QN 0.5 0.945205
91 NAX 0.496183 0.886076
92 PR8 0.495935 0.8625
93 PAJ 0.495868 0.873418
94 4AD 0.495868 0.933333
95 AMO 0.495868 0.92
96 ADQ 0.495868 0.932432
97 A12 0.495495 0.894737
98 AP2 0.495495 0.894737
99 ALF ADP 3PG 0.492424 0.873418
100 LA8 ALF 3PG 0.492424 0.873418
101 AHZ 0.492308 0.851852
102 YAP 0.492063 0.933333
103 FYA 0.491935 0.918919
104 AHX 0.491803 0.884615
105 4UU 0.488372 0.933333
106 5SV 0.487603 0.8375
107 TAT 0.487179 0.894737
108 APC 0.486957 0.894737
109 SRA 0.486239 0.881579
110 NAI 0.484848 0.921053
111 6V0 0.484848 0.909091
112 GTA 0.484615 0.898734
113 A A 0.483871 0.958333
114 LAD 0.483871 0.873418
115 AU1 0.482456 0.906667
116 TXE 0.481203 0.921053
117 AF3 ADP 3PG 0.481203 0.873418
118 OMR 0.481203 0.841463
119 LAQ 0.480916 0.851852
120 G3A 0.48062 0.909091
121 TXA 0.48 0.92
122 NB8 0.48 0.884615
123 ME8 0.48 0.851852
124 BIS 0.48 0.871795
125 PTJ 0.48 0.884615
126 139 0.477941 0.886076
127 LPA AMP 0.477273 0.851852
128 AR6 AR6 0.476923 0.958333
129 G5P 0.476923 0.909091
130 AFH 0.476923 0.873418
131 25L 0.47619 0.945205
132 25A 0.47541 0.958333
133 DZD 0.47482 0.897436
134 TXD 0.473684 0.921053
135 4UV 0.472868 0.933333
136 TYM 0.470149 0.945946
137 ADV 0.470085 0.894737
138 RBY 0.470085 0.894737
139 ARG AMP 0.469697 0.841463
140 4TA 0.467626 0.864198
141 48N 0.466165 0.884615
142 XAH 0.465116 0.851852
143 4UW 0.462687 0.897436
144 M24 0.461538 0.886076
145 IOT 0.459854 0.821429
146 T5A 0.456522 0.853659
147 EAD 0.455782 0.886076
148 MAP 0.455285 0.883117
149 BT5 0.453901 0.821429
150 A4P 0.452555 0.833333
151 UP5 0.451852 0.933333
152 PAP 0.445378 0.917808
153 AP0 0.445255 0.884615
154 4TC 0.445255 0.909091
155 YLP 0.444444 0.831325
156 P1H 0.443709 0.864198
157 AOC 0.442478 0.810811
158 Z5A 0.439189 0.833333
159 2A5 0.436975 0.857143
160 G A A A 0.43662 0.909091
161 COD 0.43662 0.802326
162 ADJ 0.435714 0.841463
163 YLC 0.434783 0.851852
164 YLB 0.434783 0.831325
165 U A G G 0.433566 0.921053
166 ATR 0.433333 0.90411
167 7MD 0.432836 0.851852
168 G5A 0.429752 0.790698
169 PO4 PO4 A A A A PO4 0.429688 0.943662
170 TAD 0.42963 0.873418
171 5AS 0.42735 0.770115
172 BTX 0.426573 0.831325
173 YLA 0.425532 0.831325
174 DSZ 0.425197 0.790698
175 NCN 0.424779 0.805556
176 UPA 0.42446 0.921053
177 VMS 0.424 0.8
178 54H 0.424 0.8
179 N0B 0.422819 0.853659
180 6AD 0.422764 0.85
181 AYB 0.422535 0.821429
182 7D3 0.422414 0.844156
183 YLY 0.421769 0.821429
184 TSB 0.420635 0.809524
185 ODP 0.41958 0.922078
186 AV2 0.419355 0.855263
187 FB0 0.419355 0.775281
188 A5A 0.419355 0.819277
189 NNR 0.419048 0.739726
190 A A A 0.418605 0.918919
191 LEU LMS 0.418605 0.793103
192 649 0.417266 0.775281
193 NMN AMP PO4 0.416667 0.933333
194 SSA 0.416 0.790698
195 P5A 0.415385 0.755556
196 LSS 0.414062 0.772727
197 A2R 0.412698 0.918919
198 52H 0.412698 0.790698
199 JB6 0.412214 0.896104
200 5N5 0.411215 0.783784
201 YSA 0.410448 0.811765
202 5CA 0.409449 0.790698
203 53H 0.409449 0.790698
204 ITT 0.408333 0.878378
205 7D4 0.408333 0.844156
206 NA7 0.407692 0.894737
207 5CD 0.407407 0.794521
208 0WD 0.406897 0.909091
209 A3P 0.40678 0.930556
210 AVV 0.40625 0.860759
211 RAB 0.40566 0.808219
212 ADN 0.40566 0.808219
213 XYA 0.40566 0.808219
214 FDA 0.405063 0.823529
215 GSU 0.40458 0.790698
216 7MC 0.404255 0.831325
217 NSS 0.403101 0.811765
218 6FA 0.402516 0.853659
219 NVA LMS 0.4 0.793103
220 PPS 0.4 0.817073
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5JY6; Ligand: NAD; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5jy6.bio1) has 49 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5JY6; Ligand: NAD; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5jy6.bio1) has 48 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5JY6; Ligand: NAD; Similar sites found: 153
This union binding pocket(no: 3) in the query (biounit: 5jy6.bio1) has 50 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1CDO NAD 0.001359 0.44481 1.68539
2 1E3I CXF 0.0038 0.40475 1.68539
3 1DJN ADP 0.00005537 0.51629 1.78326
4 1GZ6 NAI 0.003733 0.41606 1.88088
5 2ZAT NAP 0.00636 0.40911 1.92308
6 1LJ8 NAD 0.003899 0.43705 1.96629
7 1M2W NAD 0.00816 0.41964 1.96629
8 3CGB FAD 0.001348 0.41915 1.96629
9 3NGL NAP 0.0196 0.40775 2.17391
10 3FG2 FAD 0.001322 0.42887 2.24719
11 3GMB FAD 0.002217 0.41788 2.24719
12 2EG5 SAH 0.02944 0.41383 2.24719
13 1H5Q NAP 0.0009865 0.43907 2.26415
14 5JE8 NAD 0.00009096 0.49844 2.31788
15 5MDH NAD 0.00453 0.42003 2.4024
16 1O5I NAD 0.00568 0.43593 2.40964
17 4G74 FAD 0.001311 0.42185 2.52809
18 4OOE NDP 0.01354 0.40242 2.52809
19 1D1T NAD 0.0005904 0.44512 2.68097
20 1Z82 NDP 0.01329 0.40047 2.68657
21 3A28 NAD 0.006103 0.40983 2.71318
22 1GEG NAD 0.0104 0.40045 2.73438
23 1ZBQ NAD 0.00126 0.43223 2.75229
24 5VN0 NAI 0.0006133 0.45944 2.80899
25 5JWC FAD 0.001105 0.42695 2.80899
26 2X3N FAD 0.001324 0.41943 2.80899
27 5VN0 FAD 0.003238 0.40326 2.80899
28 2DT5 NAD 0.0001142 0.4831 2.8436
29 1P77 ATR 0.0002239 0.54701 2.94118
30 1NYT NAP 0.001923 0.44138 2.95203
31 1VL8 NAP 0.001249 0.42982 2.99625
32 4OSP NAP 0.004166 0.419 3.04183
33 1ZEM NAD 0.000163 0.48381 3.05344
34 3ICT ADP 0.000006619 0.60719 3.08989
35 2RGJ FAD 0.0007586 0.43819 3.08989
36 4XYB NDP 0.0008423 0.43387 3.08989
37 1F8G NAD 0.009373 0.41973 3.08989
38 1L7E NAI 0.01368 0.40705 3.08989
39 5DMZ ADP 0.03491 0.40121 3.08989
40 1C1X NAD 0.000007429 0.40018 3.09859
41 2CVZ NDP 0.003944 0.42519 3.11419
42 1NPD NAD 0.0008271 0.46051 3.125
43 3R9V DXC 0.01256 0.43402 3.14685
44 3RGQ 5P5 0.03775 0.42315 3.20513
45 1EQ2 NAP 0.005709 0.411 3.22581
46 3KB6 NAD 0.0001096 0.48741 3.29341
47 1X87 NAD 0.0002072 0.49077 3.37079
48 3IHG FAD 0.001657 0.43545 3.37079
49 2PK3 A2R 0.001939 0.45791 3.42679
50 2OOR NAD 0.009779 0.41889 3.44828
51 1GEE NAD 0.008837 0.40332 3.44828
52 3QJ4 FAD 0.00386 0.40051 3.50877
53 2Q46 NAP 0.002823 0.42595 3.55731
54 2C29 NAP 0.004854 0.41628 3.56083
55 1RPN NDP 0.00768 0.40142 3.58209
56 1E5Q NDP 0.000382 0.46159 3.65169
57 1OMO NAD 0.00003618 0.52001 3.72671
58 1FWV SGA MAG FUC 0.01034 0.45841 3.73134
59 4NBT NAD 0.004593 0.41726 3.75
60 5H81 NAP 0.0004973 0.47762 3.93258
61 4WCX MET 0.01288 0.42302 3.93258
62 2HK9 ATR 0.00006718 0.56151 4
63 2HK9 NAP 0.0002616 0.47512 4
64 4CQM NAP 0.002421 0.42608 4.09836
65 1WDK NAD 0.00004575 0.51998 4.21348
66 2GV8 NDP 0.002019 0.44353 4.21348
67 2GV8 FAD 0.001717 0.4221 4.21348
68 2AHR NAP 0.00852 0.40177 4.2471
69 4YCA NDP 0.0002196 0.47834 4.42177
70 3OJO NAD 0.00005172 0.51761 4.49438
71 2PV7 NAD 0.00009771 0.48949 4.49438
72 5MQ6 NDP 0.001967 0.44722 4.49438
73 2FR1 NDP 0.0008498 0.43892 4.49438
74 2I3G NAP 0.0004212 0.45377 4.54545
75 4HXY NDP 0.0006783 0.44553 4.77528
76 1OBB NAD 0.01584 0.40423 4.77528
77 2G5C NAD 0.0001927 0.47047 4.98221
78 4DPL NAP 0.004364 0.41573 5.05618
79 3LU1 NAD 0.004645 0.41463 5.05618
80 3SQP FAD 0.00944 0.40925 5.05618
81 4O0L NDP 0.003582 0.41677 5.09091
82 2Q0L NAP 0.005658 0.44663 5.14469
83 1Y1P NMN AMP PO4 0.003776 0.43459 5.26316
84 4XQC NAD 0.000458 0.42252 5.61798
85 4XQC 13D 0.0005998 0.41653 5.61798
86 2XVF FAD 0.002471 0.40955 5.61798
87 2ZXI FAD 0.003672 0.40327 5.61798
88 1W73 NAP 0.001484 0.44939 5.62914
89 1W6U NAP 0.006796 0.42041 5.62914
90 4GKV NAD 0.00145 0.42489 5.65476
91 1YKF NAP 0.007675 0.4058 5.68182
92 1J49 NAD 0.0001337 0.48029 5.70571
93 3GFB NAD 0.0001378 0.48327 5.71429
94 1U7T NAD 0.001865 0.43612 5.74713
95 1HYH NAD 0.0002654 0.46174 5.82524
96 1Y8Q ATP 0.001366 0.45097 5.89888
97 5TUK FAD 0.0005656 0.45771 6.17978
98 5GZ6 NDP 0.002506 0.44914 6.44172
99 5GZ6 7C3 0.004043 0.43326 6.44172
100 5TUF FAD 0.000897 0.438 6.46067
101 1Q1R FAD 0.004214 0.40109 6.46067
102 5N53 8NB 0.01432 0.44876 6.66667
103 1E3W NAD 0.001539 0.43403 6.89655
104 3OA2 NAD 0.001276 0.44011 6.91824
105 1E6W NAD 0.003445 0.41988 6.92308
106 4RDH AMP 0.000411 0.50345 6.94444
107 1NVM NAD 0.00001169 0.41017 6.95652
108 1XHC FAD 0.0008 0.42978 7.02247
109 1BXK NAD 0.0007756 0.44897 7.04225
110 3VY6 BGC BGC 0.0157 0.41081 7.0922
111 3GD4 NAD 0.001549 0.45184 7.30337
112 3GD4 FAD 0.002174 0.41158 7.30337
113 4EUE NAI 0.004661 0.40994 7.30337
114 3DXY SAM 0.006809 0.45049 7.33945
115 2NUO BGC 0.02067 0.41433 7.37705
116 4K28 NAD 0.00001453 0.53273 7.43494
117 3SJU NDP 0.003044 0.41959 7.52688
118 3WMX NAD 0.0007856 0.45489 7.58427
119 4XDY NAI 0.0006813 0.45751 7.69231
120 2JAP NDP 0.004556 0.41261 7.69231
121 1LSS NAD 0.00005994 0.52398 7.85714
122 5CAE COA 0.0002466 0.48352 7.86517
123 5CAE SIN 0.000872 0.43585 7.86517
124 3ORF NAD 0.002947 0.42518 8.36653
125 2HNK SAH 0.0182 0.40924 8.3682
126 3L9W AMP 0.0009883 0.43903 8.42697
127 3L9W GSH 0.001878 0.43322 8.42697
128 4ZRN NAD 0.003991 0.40815 8.65385
129 2CVQ NDP 0.001248 0.4405 8.8685
130 2DC1 NAD 0.0001317 0.48409 8.8983
131 1X14 NAD 0.001151 0.47674 8.98876
132 5JDC NAP 0.008759 0.40573 9.02778
133 5JCJ NAP 0.009881 0.40357 9.02778
134 4CM8 NAP 0.01026 0.4029 9.02778
135 4CMI NAP 0.0103 0.40283 9.02778
136 3JQB NAP 0.01212 0.40215 9.02778
137 4CM4 NAP 0.01103 0.40161 9.02778
138 3JQG NAP 0.01292 0.40099 9.02778
139 3BMN NAP 0.01033 0.40056 9.02778
140 3JQ8 NAP 0.01037 0.4005 9.02778
141 4CJX NAP 0.0003517 0.47316 9.40439
142 2IVD FAD 0.004978 0.40041 9.41423
143 1FL2 FAD 0.003407 0.40052 10
144 2Q1W NAD 0.00302 0.41501 10.5105
145 1P31 EPU 0.006942 0.43511 10.6742
146 1QMG APX 0.01115 0.41357 10.6742
147 2FKA BEF 0.01276 0.44878 10.8527
148 5I39 FAD 0.00279 0.40559 12.9213
149 1MUU NAD 0.00008266 0.50023 15.1685
150 1MV8 NAD 0.000105 0.49191 15.4494
151 1KYQ NAD 0.000004694 0.59349 17.8832
152 4II2 ATP 0.0003317 0.48969 19.2771
153 2YYY NAP 0.000004228 0.41472 30.3207
Pocket No.: 4; Query (leader) PDB : 5JY6; Ligand: NAD; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5jy6.bio1) has 49 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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