Receptor
PDB id Resolution Class Description Source Keywords
5J7Z 2.15 Å EC: 7.-.-.- CRYSTAL STRUCTURE OF ENDOGLYCOCERAMIDASE I FROM RHODOCOC-CUS COMPLEX WITH GM1 RHODOCOCCUS EQUI 103S COMPLEX HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE BROAD SUBSTRATE SPECIF A NOVEL ENDOGLYCOCERAMIDASE I BELONGING TO A NEW SU OF GH5 GLYCOSIDASES. J. BIOL. CHEM. V. 292 4789 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NA A:606;
B:501;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
22.99 Na [Na+]
BGC 18C GAL SIA NGA GAL C:1;
 Valid;
 Atoms found LESS than expected: % Diff = 0.131;
 submit data
1349.45 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5J7Z 2.15 Å EC: 7.-.-.- CRYSTAL STRUCTURE OF ENDOGLYCOCERAMIDASE I FROM RHODOCOC-CUS COMPLEX WITH GM1 RHODOCOCCUS EQUI 103S COMPLEX HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE BROAD SUBSTRATE SPECIF A NOVEL ENDOGLYCOCERAMIDASE I BELONGING TO A NEW SU OF GH5 GLYCOSIDASES. J. BIOL. CHEM. V. 292 4789 2017
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 319 families.
1 5J7Z - BGC 18C GAL SIA NGA GAL n/a n/a
2 5J14 - BGC 18C GAL SIA n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 271 families.
1 5J7Z - BGC 18C GAL SIA NGA GAL n/a n/a
2 5J14 - BGC 18C GAL SIA n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 223 families.
1 5J7Z - BGC 18C GAL SIA NGA GAL n/a n/a
2 5J14 - BGC 18C GAL SIA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BGC 18C GAL SIA NGA GAL; Similar ligands found: 49
No: Ligand ECFP6 Tc MDL keys Tc
1 BGC 18C GAL SIA NGA GAL 1 1
2 BGC 18C GAL SIA 0.817568 1
3 BGC 16C GAL SIA 0.78 1
4 BGC GAL SIA NGA GAL 0.642384 0.83871
5 IGC 0.594595 0.903226
6 LGN 0.594595 0.903226
7 BGC CEQ GAL SLB NGA GAL SIA SIA 0.594118 0.823529
8 BGC GAL SIA NGA GAL SIA 0.593548 0.83871
9 BGC GAL SIA NGA GAL FUC 0.588957 0.83871
10 SIA GAL NGA GAL 0.586667 0.83871
11 BGC 18C GAL 0.583333 0.903226
12 BGC GAL GLA NGA GAL SIA 0.55 0.83871
13 GAL SIA NGA GAL SIA 0.545455 0.83871
14 BGC GAL SIA NAG 0.537975 0.83871
15 GAL SIA NGA GAL 0.535484 0.854839
16 GAL NGA GAL SIA 0.525641 0.83871
17 GAL SIA NGA GAL SIA SIA 0.521212 0.854839
18 BGC GAL SIA NGA SIA 0.511765 0.854839
19 GAL NGA GAL SIA SIA 0.5 0.854839
20 CEQ BGC NGA GAL SIA SIA 0.491713 0.867647
21 GAL NAG FUC GAL SIA 0.47619 0.83871
22 MAG FUC GAL SIA 0.47561 0.809524
23 GAL SIA NGA 0.471338 0.83871
24 03F 0.469799 0.870968
25 NGA GAL SIA 0.46875 0.822581
26 NAG GAL SIA 0.464968 0.83871
27 BGC GAL SIA SIA 0.461078 0.854839
28 NGA POL GAL NGC AZI 0.458824 0.75
29 A2G GAL SIA 0.458599 0.83871
30 GAL NAG GAL SIA 0.451219 0.854839
31 NAG FUC GAL SIA 0.449102 0.83871
32 NAG GAL NGC 0.445122 0.83871
33 SLF 0.43871 0.74026
34 EIS 0.43871 0.74026
35 NGS GAL SIA 0.437126 0.684211
36 BGC GAL NAG GAL SIA 0.436782 0.854839
37 BGC SPH GAL OCA 0.433962 0.84375
38 GLC GAL NGC 0.432099 0.806452
39 NDG GAL SIA SIA 0.431138 0.887097
40 NAG GAL SIA SIA 0.431138 0.854839
41 NAG GAL NAG GAL SIA 0.431034 0.854839
42 CIS 0.43038 0.74026
43 Z3Q GAL 5N6 0.421965 0.797101
44 BGC GAL SIA 0.417178 0.822581
45 NGS FUC GLA SIA 0.41573 0.684211
46 NAG 2FG SIA 0.412121 0.787879
47 C4W NAG FUC BMA MAN MAN NAG GAL SIA NAG 0.408867 0.757143
48 C4W NAG FUC BMA MAN NAG GAL SIA 0.407216 0.757143
49 0SG 0.401235 0.727273
Similar Ligands (3D)
Ligand no: 1; Ligand: BGC 18C GAL SIA NGA GAL; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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